Csa2G375220 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa2G375220
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr2 : 18854566 .. 18855006 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCGCACATATACTGGATCGCACGAACCATCGATGCTTTTCCAAGAAAGAGGCAAGAAACTAAACACATGGACAGGAAGAGAAGAGAAGCACAACCAGCTTGTAGAGTATCGAATTACAACTACTTAGCTGTAGTTTTTGAAGAAATGCCGACAAATTGTGGTTGCTGGACGAGAAAATTGATCTTCGATCTTGGATCCAGGAGTTTACGACGATCTCCGATGAACCCTAGTTGAAATGGCGGTAGAGGGGAAATACTTGTTCCAGAAATTTGTTGGAAATGATTTACAAGAAAGAGAGAGAGAAGTGGTGTAAACTGGCAGCGTAGCTTCCAAGCTGAATCGGCAATTTACAGTAGCCCACCAGTGTCCCACGATCTTCGGGATTTAACGGTTCTCTGTGCTCTGACCGGCGGCTTCCGGCAATCGTATCGTTATTAA

mRNA sequence

ATGCCGCACATATACTGGATCGCACGAACCATCGATGCTTTTCCAAGAAAGAGGCAAGAAACTAAACACATGGACAGGAAGAGAAGAGAAGCACAACCAGCTTGTAGAGTATCGAATTACAACTACTTAGCTCGTAGCTTCCAAGCTGAATCGGCAATTTACAGTAGCCCACCAGTGTCCCACGATCTTCGGGATTTAACGGTTCTCTGTGCTCTGACCGGCGGCTTCCGGCAATCGTATCGTTATTAA

Coding sequence (CDS)

ATGCCGCACATATACTGGATCGCACGAACCATCGATGCTTTTCCAAGAAAGAGGCAAGAAACTAAACACATGGACAGGAAGAGAAGAGAAGCACAACCAGCTTGTAGAGTATCGAATTACAACTACTTAGCTCGTAGCTTCCAAGCTGAATCGGCAATTTACAGTAGCCCACCAGTGTCCCACGATCTTCGGGATTTAACGGTTCTCTGTGCTCTGACCGGCGGCTTCCGGCAATCGTATCGTTATTAA

Protein sequence

MPHIYWIARTIDAFPRKRQETKHMDRKRREAQPACRVSNYNYLARSFQAESAIYSSPPVSHDLRDLTVLCALTGGFRQSYRY*
Homology
[Close]
BLAST of Csa2G375220 vs. TrEMBL
Match: A0A0A0LLL1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G375220 PE=4 SV=1)

HSP 1 Score: 173.7 bits (439), Expect = 9.3e-41
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 1 

Query: 1  MPHIYWIARTIDAFPRKRQETKHMDRKRREAQPACRVSNYNYLARSFQAESAIYSSPPVS 60
          MPHIYWIARTIDAFPRKRQETKHMDRKRREAQPACRVSNYNYLARSFQAESAIYSSPPVS
Sbjct: 1  MPHIYWIARTIDAFPRKRQETKHMDRKRREAQPACRVSNYNYLARSFQAESAIYSSPPVS 60

Query: 61 HDLRDLTVLCALTGGFRQSYRY 83
          HDLRDLTVLCALTGGFRQSYRY
Sbjct: 61 HDLRDLTVLCALTGGFRQSYRY 82

[Close]
BLAST of Csa2G375220 vs. NCBI nr
Match: gi|700207711|gb|KGN62830.1| (hypothetical protein Csa_2G375220 [Cucumis sativus])

HSP 1 Score: 173.7 bits (439), Expect = 1.3e-40
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 1 

Query: 1  MPHIYWIARTIDAFPRKRQETKHMDRKRREAQPACRVSNYNYLARSFQAESAIYSSPPVS 60
          MPHIYWIARTIDAFPRKRQETKHMDRKRREAQPACRVSNYNYLARSFQAESAIYSSPPVS
Sbjct: 1  MPHIYWIARTIDAFPRKRQETKHMDRKRREAQPACRVSNYNYLARSFQAESAIYSSPPVS 60

Query: 61 HDLRDLTVLCALTGGFRQSYRY 83
          HDLRDLTVLCALTGGFRQSYRY
Sbjct: 61 HDLRDLTVLCALTGGFRQSYRY 82

The following BLAST results are available for this feature:
BLAST of Csa2G375220 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LLL1_CUCSA9.3e-41100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_2G375220 PE=4 SV=1[more]
BLAST of Csa2G375220 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700207711|gb|KGN62830.1|1.3e-40100.00hypothetical protein Csa_2G375220 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa2G375220.1Csa2G375220.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa2G375220CSPI02G22400Wild cucumber (PI 183967)cpicuB065
Csa2G375220CsGy2G022160Cucumber (Gy14) v2cgybcuB057
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa2G375220Melon (DHL92) v3.6.1cumedB114
Csa2G375220Silver-seed gourdcarcuB0059
Csa2G375220Silver-seed gourdcarcuB0987
Csa2G375220Watermelon (97103) v2cuwmbB159
Csa2G375220Wax gourdcuwgoB165
Csa2G375220Cucumber (Gy14) v1cgycuB233
Csa2G375220Cucurbita maxima (Rimu)cmacuB164
Csa2G375220Cucurbita maxima (Rimu)cmacuB785
Csa2G375220Cucurbita moschata (Rifu)cmocuB149
Csa2G375220Cucurbita moschata (Rifu)cmocuB778
Csa2G375220Melon (DHL92) v3.5.1cumeB117
Csa2G375220Watermelon (Charleston Gray)cuwcgB165
Csa2G375220Watermelon (97103) v1cuwmB107
Csa2G375220Cucurbita pepo (Zucchini)cpecuB097
Csa2G375220Cucurbita pepo (Zucchini)cpecuB810
Csa2G375220Bottle gourd (USVL1VR-Ls)culsiB140