Csa2G369180 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa2G369180
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr2 : 18010247 .. 18010495 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGATTCTTTCGATTTCTTCATCTTCAACCTACTTTGGATTGCCCACAATTCGATCCCACCACCCTCATCGCCATGGATCAAACCTCAATCTCACTCATCTCCATAACCATAACAGCTTGCCACTAATTCCAACTACCAAAACGAATCCCAAAAGCTCAACTTGTACTCGTAATATGGCCATTTACAGCGCTGACTCCATCATCGGACTTCCATCTCTTCCTCCTTTCCACGACACTCCTTCGTAA

mRNA sequence

ATGTCGATTCTTTCGATTTCTTCATCTTCAACCTACTTTGGATTGCCCACAATTCGATCCCACCACCCTCATCGCCATGGATCAAACCTCAATCTCACTCATCTCCATAACCATAACAGCTTGCCACTAATTCCAACTACCAAAACGAATCCCAAAAGCTCAACTTGTACTCGTAATATGGCCATTTACAGCGCTGACTCCATCATCGGACTTCCATCTCTTCCTCCTTTCCACGACACTCCTTCGTAA

Coding sequence (CDS)

ATGTCGATTCTTTCGATTTCTTCATCTTCAACCTACTTTGGATTGCCCACAATTCGATCCCACCACCCTCATCGCCATGGATCAAACCTCAATCTCACTCATCTCCATAACCATAACAGCTTGCCACTAATTCCAACTACCAAAACGAATCCCAAAAGCTCAACTTGTACTCGTAATATGGCCATTTACAGCGCTGACTCCATCATCGGACTTCCATCTCTTCCTCCTTTCCACGACACTCCTTCGTAA

Protein sequence

MSILSISSSSTYFGLPTIRSHHPHRHGSNLNLTHLHNHNSLPLIPTTKTNPKSSTCTRNMAIYSADSIIGLPSLPPFHDTPS*

Homology

[Close]

BLAST of Csa2G369180 vs. TrEMBL
Match: A0A0A0LRS4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G369180 PE=4 SV=1)

HSP 1 Score: 174.1 bits (440), Expect = 7.1e-41
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 1


Query: 1  MSILSISSSSTYFGLPTIRSHHPHRHGSNLNLTHLHNHNSLPLIPTTKTNPKSSTCTRNM 60
          MSILSISSSSTYFGLPTIRSHHPHRHGSNLNLTHLHNHNSLPLIPTTKTNPKSSTCTRNM
Sbjct: 1  MSILSISSSSTYFGLPTIRSHHPHRHGSNLNLTHLHNHNSLPLIPTTKTNPKSSTCTRNM 60

Query: 61 AIYSADSIIGLPSLPPFHDTPS 83
          AIYSADSIIGLPSLPPFHDTPS
Sbjct: 61 AIYSADSIIGLPSLPPFHDTPS 82

[Close]

BLAST of Csa2G369180 vs. NCBI nr
Match: gi|778671704|ref|XP_011649671.1| (PREDICTED: uncharacterized protein LOC105434653 isoform X1 [Cucumis sativus])

HSP 1 Score: 174.1 bits (440), Expect = 1.0e-40
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 1


Query: 1  MSILSISSSSTYFGLPTIRSHHPHRHGSNLNLTHLHNHNSLPLIPTTKTNPKSSTCTRNM 60
          MSILSISSSSTYFGLPTIRSHHPHRHGSNLNLTHLHNHNSLPLIPTTKTNPKSSTCTRNM
Sbjct: 1  MSILSISSSSTYFGLPTIRSHHPHRHGSNLNLTHLHNHNSLPLIPTTKTNPKSSTCTRNM 60

Query: 61 AIYSADSIIGLPSLPPFHDTPS 83
          AIYSADSIIGLPSLPPFHDTPS
Sbjct: 61 AIYSADSIIGLPSLPPFHDTPS 82

[Close]

BLAST of Csa2G369180 vs. NCBI nr
Match: gi|700207597|gb|KGN62716.1| (hypothetical protein Csa_2G369180 [Cucumis sativus])

HSP 1 Score: 174.1 bits (440), Expect = 1.0e-40
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 1


Query: 1  MSILSISSSSTYFGLPTIRSHHPHRHGSNLNLTHLHNHNSLPLIPTTKTNPKSSTCTRNM 60
          MSILSISSSSTYFGLPTIRSHHPHRHGSNLNLTHLHNHNSLPLIPTTKTNPKSSTCTRNM
Sbjct: 1  MSILSISSSSTYFGLPTIRSHHPHRHGSNLNLTHLHNHNSLPLIPTTKTNPKSSTCTRNM 60

Query: 61 AIYSADSIIGLPSLPPFHDTPS 83
          AIYSADSIIGLPSLPPFHDTPS
Sbjct: 61 AIYSADSIIGLPSLPPFHDTPS 82

[Close]

BLAST of Csa2G369180 vs. NCBI nr
Match: gi|778671707|ref|XP_011649672.1| (PREDICTED: uncharacterized protein LOC105434653 isoform X2 [Cucumis sativus])

HSP 1 Score: 174.1 bits (440), Expect = 1.0e-40
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 1


Query: 1  MSILSISSSSTYFGLPTIRSHHPHRHGSNLNLTHLHNHNSLPLIPTTKTNPKSSTCTRNM 60
          MSILSISSSSTYFGLPTIRSHHPHRHGSNLNLTHLHNHNSLPLIPTTKTNPKSSTCTRNM
Sbjct: 1  MSILSISSSSTYFGLPTIRSHHPHRHGSNLNLTHLHNHNSLPLIPTTKTNPKSSTCTRNM 60

Query: 61 AIYSADSIIGLPSLPPFHDTPS 83
          AIYSADSIIGLPSLPPFHDTPS
Sbjct: 61 AIYSADSIIGLPSLPPFHDTPS 82

[Close]

BLAST of Csa2G369180 vs. NCBI nr
Match: gi|659089551|ref|XP_008445570.1| (PREDICTED: uncharacterized protein LOC103488552 [Cucumis melo])

HSP 1 Score: 114.0 bits (284), Expect = 1.3e-22
Identity = 61/83 (73.49%), Postives = 69/83 (83.13%), Query Frame = 1


Query: 1  MSILSISSSSTYFGLPTIRSHHPHRHGSNLNL-THLHNHNSLPLIPTTKTNPKSSTCTRN 60
          M ILSISSSSTYFG PTIRSHHPHR GS+LNL +HLHNH SL L PTTK N K+STC+R+
Sbjct: 1  MWILSISSSSTYFGSPTIRSHHPHRRGSDLNLISHLHNHKSLSL-PTTKPNLKNSTCSRS 60

Query: 61 MAIYSADSIIGLPSLPPFHDTPS 83
          MAI+SADS +GLP   PF +TPS
Sbjct: 61 MAIFSADS-MGLPPFLPFSNTPS 81

The following BLAST results are available for this feature:

BLAST of Csa2G369180 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LRS4_CUCSA	7.1e-41	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G369180 PE=4 SV=1	[more]

BLAST of Csa2G369180 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778671704\|ref\|XP_011649671.1\|	1.0e-40	100.00	PREDICTED: uncharacterized protein LOC105434653 isoform X1 [Cucumis sativus]	[more]
gi\|700207597\|gb\|KGN62716.1\|	1.0e-40	100.00	hypothetical protein Csa_2G369180 [Cucumis sativus]	[more]
gi\|778671707\|ref\|XP_011649672.1\|	1.0e-40	100.00	PREDICTED: uncharacterized protein LOC105434653 isoform X2 [Cucumis sativus]	[more]
gi\|659089551\|ref\|XP_008445570.1\|	1.3e-22	73.49	PREDICTED: uncharacterized protein LOC103488552 [Cucumis melo]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
CU177844	cucumber EST collection version 3.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa2G369180.1	Csa2G369180.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
CU177844	CU177844	transcribed_cluster

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa2G369180	Melon (DHL92) v3.6.1	cumedB114
Csa2G369180	Melon (DHL92) v3.6.1	cumedB125
Csa2G369180	Melon (DHL92) v3.6.1	cumedB147
Csa2G369180	Silver-seed gourd	carcuB0059
Csa2G369180	Silver-seed gourd	carcuB0432
Csa2G369180	Silver-seed gourd	carcuB0652
Csa2G369180	Watermelon (97103) v2	cuwmbB099
Csa2G369180	Watermelon (97103) v2	cuwmbB106
Csa2G369180	Watermelon (97103) v2	cuwmbB159
Csa2G369180	Wax gourd	cuwgoB191
Csa2G369180	Wax gourd	cuwgoB158
Csa2G369180	Wax gourd	cuwgoB200
Csa2G369180	Cucumber (Chinese Long) v2	cucuB052
Csa2G369180	Cucumber (Chinese Long) v2	cucuB073
Csa2G369180	Cucumber (Gy14) v1	cgycuB114
Csa2G369180	Cucumber (Gy14) v1	cgycuB233
Csa2G369180	Cucumber (Gy14) v1	cgycuB444
Csa2G369180	Cucurbita maxima (Rimu)	cmacuB652
Csa2G369180	Cucurbita maxima (Rimu)	cmacuB785
Csa2G369180	Cucurbita moschata (Rifu)	cmocuB001
Csa2G369180	Cucurbita moschata (Rifu)	cmocuB639
Csa2G369180	Cucurbita moschata (Rifu)	cmocuB778
Csa2G369180	Melon (DHL92) v3.5.1	cumeB117
Csa2G369180	Melon (DHL92) v3.5.1	cumeB128
Csa2G369180	Melon (DHL92) v3.5.1	cumeB156
Csa2G369180	Watermelon (Charleston Gray)	cuwcgB099
Csa2G369180	Watermelon (Charleston Gray)	cuwcgB115
Csa2G369180	Watermelon (Charleston Gray)	cuwcgB165
Csa2G369180	Watermelon (97103) v1	cuwmB107
Csa2G369180	Watermelon (97103) v1	cuwmB136
Csa2G369180	Watermelon (97103) v1	cuwmB161
Csa2G369180	Cucurbita pepo (Zucchini)	cpecuB062
Csa2G369180	Cucurbita pepo (Zucchini)	cpecuB097
Csa2G369180	Bottle gourd (USVL1VR-Ls)	culsiB106
Csa2G369180	Bottle gourd (USVL1VR-Ls)	culsiB120
Csa2G369180	Bottle gourd (USVL1VR-Ls)	culsiB140
Csa2G369180	Cucumber (Gy14) v2	cgybcuB057
Csa2G369180	Cucumber (Gy14) v2	cgybcuB103
Csa2G369180	Cucumber (Gy14) v2	cgybcuB250