Csa2G360000 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa2G360000
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr2 : 16971077 .. 16971561 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ACCGCCTCTCCTCCCCAATCTTTCTTACCCTCGAAGCAGATCGATCCGATGGATCCTCACACCAAATCCCCAAATTACTTTTTCGAAAAAGCGGAATAGTGCTGAAAATTATATTTGTTTTCCTGATAACACACAGCTAACTAATATAATTATTGAATTTGGTCAAGATTTTCCGCGCTATTGCGCGCCGATTCTTGCTGCCGCTTTGCCGCCTGTTGGCGATTAAAACAATGCAATCGGACAAAGAACCCGACGACGTTTGCGACACCGGAGGAGGAGATAACGTGAACCGGAGGTTATGTAAGTTATCTGAGAAATTTCACTCAGCCGTCCGTCGCCGACAATTCGTTAAAATGCGCCGGAGCAACAAAGCTTTTCTTCGATCGATGGTTAAATGGTTAACCAACTGTGGCGCTGTTTCTTTTTTGGGCATTAACAAAAAAAATGAAAAAGAAAAAGAAAAAGGAAAAAGAGAGATGAATTAA

mRNA sequence

ATGCAATCGGACAAAGAACCCGACGACGTTTGCGACACCGGAGGAGGAGATAACGTGAACCGGAGGTTATGTAAGTTATCTGAGAAATTTCACTCAGCCGTCCGTCGCCGACAATTCGTTAAAATGCGCCGGAGCAACAAAGCTTTTCTTCGATCGATGGTTAAATGGTTAACCAACTGTGGCGCTGTTTCTTTTTTGGGCATTAACAAAAAAAATGAAAAAGAAAAAGAAAAAGGAAAAAGAGAGATGAATTAA

Coding sequence (CDS)

ATGCAATCGGACAAAGAACCCGACGACGTTTGCGACACCGGAGGAGGAGATAACGTGAACCGGAGGTTATGTAAGTTATCTGAGAAATTTCACTCAGCCGTCCGTCGCCGACAATTCGTTAAAATGCGCCGGAGCAACAAAGCTTTTCTTCGATCGATGGTTAAATGGTTAACCAACTGTGGCGCTGTTTCTTTTTTGGGCATTAACAAAAAAAATGAAAAAGAAAAAGAAAAAGGAAAAAGAGAGATGAATTAA

Protein sequence

MQSDKEPDDVCDTGGGDNVNRRLCKLSEKFHSAVRRRQFVKMRRSNKAFLRSMVKWLTNCGAVSFLGINKKNEKEKEKGKREMN*
Homology
[Close]
BLAST of Csa2G360000 vs. TrEMBL
Match: A0A0A0LP57_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G360000 PE=4 SV=1)

HSP 1 Score: 175.6 bits (444), Expect = 2.5e-41
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 1 

Query: 1  MQSDKEPDDVCDTGGGDNVNRRLCKLSEKFHSAVRRRQFVKMRRSNKAFLRSMVKWLTNC 60
          MQSDKEPDDVCDTGGGDNVNRRLCKLSEKFHSAVRRRQFVKMRRSNKAFLRSMVKWLTNC
Sbjct: 1  MQSDKEPDDVCDTGGGDNVNRRLCKLSEKFHSAVRRRQFVKMRRSNKAFLRSMVKWLTNC 60

Query: 61 GAVSFLGINKKNEKEKEKGKREMN 85
          GAVSFLGINKKNEKEKEKGKREMN
Sbjct: 61 GAVSFLGINKKNEKEKEKGKREMN 84

[Close]
BLAST of Csa2G360000 vs. NCBI nr
Match: gi|700207413|gb|KGN62532.1| (hypothetical protein Csa_2G360000 [Cucumis sativus])

HSP 1 Score: 175.6 bits (444), Expect = 3.6e-41
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 1 

Query: 1  MQSDKEPDDVCDTGGGDNVNRRLCKLSEKFHSAVRRRQFVKMRRSNKAFLRSMVKWLTNC 60
          MQSDKEPDDVCDTGGGDNVNRRLCKLSEKFHSAVRRRQFVKMRRSNKAFLRSMVKWLTNC
Sbjct: 1  MQSDKEPDDVCDTGGGDNVNRRLCKLSEKFHSAVRRRQFVKMRRSNKAFLRSMVKWLTNC 60

Query: 61 GAVSFLGINKKNEKEKEKGKREMN 85
          GAVSFLGINKKNEKEKEKGKREMN
Sbjct: 61 GAVSFLGINKKNEKEKEKGKREMN 84

The following BLAST results are available for this feature:
BLAST of Csa2G360000 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LP57_CUCSA2.5e-41100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_2G360000 PE=4 SV=1[more]
BLAST of Csa2G360000 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700207413|gb|KGN62532.1|3.6e-41100.00hypothetical protein Csa_2G360000 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa2G360000.1Csa2G360000.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa2G360000CSPI02G19340Wild cucumber (PI 183967)cpicuB065
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa2G360000Melon (DHL92) v3.5.1cumeB117
Csa2G360000Melon (DHL92) v3.5.1cumeB149
Csa2G360000Watermelon (Charleston Gray)cuwcgB140
Csa2G360000Watermelon (Charleston Gray)cuwcgB169
Csa2G360000Watermelon (97103) v1cuwmB111
Csa2G360000Watermelon (97103) v1cuwmB126
Csa2G360000Cucurbita pepo (Zucchini)cpecuB096
Csa2G360000Cucurbita pepo (Zucchini)cpecuB539
Csa2G360000Cucurbita pepo (Zucchini)cpecuB771
Csa2G360000Cucurbita pepo (Zucchini)cpecuB819
Csa2G360000Bottle gourd (USVL1VR-Ls)culsiB117
Csa2G360000Bottle gourd (USVL1VR-Ls)culsiB142
Csa2G360000Cucumber (Gy14) v2cgybcuB057
Csa2G360000Cucumber (Gy14) v2cgybcuB160
Csa2G360000Cucumber (Gy14) v2cgybcuB297
Csa2G360000Melon (DHL92) v3.6.1cumedB114
Csa2G360000Melon (DHL92) v3.6.1cumedB141
Csa2G360000Silver-seed gourdcarcuB0110
Csa2G360000Silver-seed gourdcarcuB0202
Csa2G360000Silver-seed gourdcarcuB0299
Csa2G360000Silver-seed gourdcarcuB0788
Csa2G360000Watermelon (97103) v2cuwmbB135
Csa2G360000Watermelon (97103) v2cuwmbB163
Csa2G360000Wax gourdcuwgoB162
Csa2G360000Wax gourdcuwgoB198
Csa2G360000Cucumber (Chinese Long) v2cucuB062
Csa2G360000Cucumber (Chinese Long) v2cucuB079
Csa2G360000Cucumber (Gy14) v1cgycuB162
Csa2G360000Cucumber (Gy14) v1cgycuB326
Csa2G360000Cucurbita maxima (Rimu)cmacuB011
Csa2G360000Cucurbita maxima (Rimu)cmacuB174
Csa2G360000Cucurbita maxima (Rimu)cmacuB437
Csa2G360000Cucurbita maxima (Rimu)cmacuB784
Csa2G360000Cucurbita moschata (Rifu)cmocuB002
Csa2G360000Cucurbita moschata (Rifu)cmocuB158
Csa2G360000Cucurbita moschata (Rifu)cmocuB424
Csa2G360000Cucurbita moschata (Rifu)cmocuB777