Csa2G345980 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa2G345980
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr2 : 15453908 .. 15454404 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCGTCATGTTATCAATGAAAAGTTGGAGTTGAATGGGCAGAAACTTAGAGGTACGGGGAATATTAAAGTGGGGAGTAAAGGCATATCAATCAGGGACTTAGAAATACTAAAGCTGTTCTAAACTGTATGGCTTTTGTTACTGGGAATTCTTGTAGGGCGTGCCTATGTTTTATCTATACTCTTTGTCAACATTTAGGCTGTTCTCAAACCTAAGCGTTATGCTTTTTAGCCCTTACGAAAACAGATTCATTGTAACAGTCTAGTCCTGCTTTAAGGAAAAGGATCAAAAATGATATTGAACCTGTAAAGAGATTAAGTTTTATCACAACTCTCCTTGATCCTGTAAGGTTGTTGCACCAAAATCAATACAGCTACAATGAGCCAACACCACCTTTAAGTACAAATTCACAGGGTCCGAAAGAACGAGAAATTGCTATTTGCAACATGGATCTATCAGATTATTCTCACAGATGCTTTTGTGATCTAATGTTCTAA

mRNA sequence

ATGCGTCATGTTATCAATGAAAAGTTGGAGTTGAATGGGCAGAAACTTAGAGGTACGGGGAATATTAAATCTAGTCCTGCTTTAAGGAAAAGGATCAAAAATGATATTGAACCTGTAAAGAGATTAAGTTTTATCACAACTCTCCTTGATCCTGTAAGGTTGTTGCACCAAAATCAATACAGCTACAATGAGCCAACACCACCTTTAAGTACAAATTCACAGGGTCCGAAAGAACGAGAAATTGCTATTTGCAACATGGATCTATCAGATTATTCTCACAGATGCTTTTGTGATCTAATGTTCTAA

Coding sequence (CDS)

ATGCGTCATGTTATCAATGAAAAGTTGGAGTTGAATGGGCAGAAACTTAGAGGTACGGGGAATATTAAATCTAGTCCTGCTTTAAGGAAAAGGATCAAAAATGATATTGAACCTGTAAAGAGATTAAGTTTTATCACAACTCTCCTTGATCCTGTAAGGTTGTTGCACCAAAATCAATACAGCTACAATGAGCCAACACCACCTTTAAGTACAAATTCACAGGGTCCGAAAGAACGAGAAATTGCTATTTGCAACATGGATCTATCAGATTATTCTCACAGATGCTTTTGTGATCTAATGTTCTAA

Protein sequence

MRHVINEKLELNGQKLRGTGNIKSSPALRKRIKNDIEPVKRLSFITTLLDPVRLLHQNQYSYNEPTPPLSTNSQGPKEREIAICNMDLSDYSHRCFCDLMF*
Homology
[Close]
BLAST of Csa2G345980 vs. TrEMBL
Match: A0A0A0LN75_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G345980 PE=4 SV=1)

HSP 1 Score: 210.3 bits (534), Expect = 1.1e-51
Identity = 101/101 (100.00%), Postives = 101/101 (100.00%), Query Frame = 1 

Query: 1   MRHVINEKLELNGQKLRGTGNIKSSPALRKRIKNDIEPVKRLSFITTLLDPVRLLHQNQY 60
           MRHVINEKLELNGQKLRGTGNIKSSPALRKRIKNDIEPVKRLSFITTLLDPVRLLHQNQY
Sbjct: 1   MRHVINEKLELNGQKLRGTGNIKSSPALRKRIKNDIEPVKRLSFITTLLDPVRLLHQNQY 60

Query: 61  SYNEPTPPLSTNSQGPKEREIAICNMDLSDYSHRCFCDLMF 102
           SYNEPTPPLSTNSQGPKEREIAICNMDLSDYSHRCFCDLMF
Sbjct: 61  SYNEPTPPLSTNSQGPKEREIAICNMDLSDYSHRCFCDLMF 101

[Close]
BLAST of Csa2G345980 vs. NCBI nr
Match: gi|700207138|gb|KGN62257.1| (hypothetical protein Csa_2G345980 [Cucumis sativus])

HSP 1 Score: 210.3 bits (534), Expect = 1.6e-51
Identity = 101/101 (100.00%), Postives = 101/101 (100.00%), Query Frame = 1 

Query: 1   MRHVINEKLELNGQKLRGTGNIKSSPALRKRIKNDIEPVKRLSFITTLLDPVRLLHQNQY 60
           MRHVINEKLELNGQKLRGTGNIKSSPALRKRIKNDIEPVKRLSFITTLLDPVRLLHQNQY
Sbjct: 1   MRHVINEKLELNGQKLRGTGNIKSSPALRKRIKNDIEPVKRLSFITTLLDPVRLLHQNQY 60

Query: 61  SYNEPTPPLSTNSQGPKEREIAICNMDLSDYSHRCFCDLMF 102
           SYNEPTPPLSTNSQGPKEREIAICNMDLSDYSHRCFCDLMF
Sbjct: 61  SYNEPTPPLSTNSQGPKEREIAICNMDLSDYSHRCFCDLMF 101

The following BLAST results are available for this feature:
BLAST of Csa2G345980 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LN75_CUCSA1.1e-51100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_2G345980 PE=4 SV=1[more]
BLAST of Csa2G345980 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700207138|gb|KGN62257.1|1.6e-51100.00hypothetical protein Csa_2G345980 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU087918cucumber EST collection version 3.0transcribed_cluster
CU145630cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa2G345980.1Csa2G345980.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU145630CU145630transcribed_cluster
CU087918CU087918transcribed_cluster


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa2G345980Wax gourdcuwgoB166
Csa2G345980Cucumber (Gy14) v1cgycuB549
Csa2G345980Cucurbita maxima (Rimu)cmacuB177
Csa2G345980Cucurbita maxima (Rimu)cmacuB788
Csa2G345980Cucurbita moschata (Rifu)cmocuB162
Csa2G345980Cucurbita moschata (Rifu)cmocuB780
Csa2G345980Melon (DHL92) v3.5.1cumeB116
Csa2G345980Watermelon (Charleston Gray)cuwcgB170
Csa2G345980Watermelon (97103) v1cuwmB112
Csa2G345980Cucurbita pepo (Zucchini)cpecuB099
Csa2G345980Cucurbita pepo (Zucchini)cpecuB824
Csa2G345980Bottle gourd (USVL1VR-Ls)culsiB143
Csa2G345980Cucumber (Gy14) v2cgybcuB057
Csa2G345980Melon (DHL92) v3.6.1cumedB113
Csa2G345980Silver-seed gourdcarcuB0153
Csa2G345980Silver-seed gourdcarcuB0991
Csa2G345980Watermelon (97103) v2cuwmbB164