Csa2G338810 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa2G338810
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionTrafficking protein particle complex subunit; contains IPR006722 (Sedlin)
LocationChr2 : 15314931 .. 15318888 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTACTTCACGACTCTCGCAATGATGATGGAATTAAGAGCTTTTTTCAAGAGGTTCACGAGCTTTACATAAAGGTAAGTTGGACATTTTTTCTTATGTATCACTATTGTTATTGCTTGTGGTGCTTAGTGTGTGTGTGTATTTCAACAACACACGGGGGAGTGTTGTGCTTAATTTTGCTATGTTATGTATATTATACGGGTTGATTGAAGTATATCTTAGTTGATTAAGTTACTTTTCCAAAGCTGGGAGACATACTTTGATTCGGTCTGTTATGAGTGGCATTCCCATTTACTTATTTTCTTTGTTTAGAACCTGAGTAAAGTTTGCAAGGACATTGAAAAACTGATGTGTAACTTTCTTTGGGAAGAGGTGGAAAAAGGAAATGGATTGCAACGAGTTAGATAGGAGATCGATGAACTCGGGGAATTAAAAATTGATTATGAAAGGACTCATAACAAAGCCCTATTAGCTTTGGCATTTTGCTCTTGATTCTGTTACCTTTTTGCACAAGGATATTGCTTGCAAGTTTGGGCCTCATCCCTTTGAGTGGTTGTCAGGTGGGCGTGGGATTAAAGGCATCAACTAGAATTTGTGGAAGGATATTTCTAACAAGCTGCCCTCTTTCTCCCATTTTGTCTGTTGTGTGGTTGGGTAGAGGAGGGTGAGGAAGCATAGTTCTGGGGTGATCAGTGCTTGGGGATAGACCTCTCTGCTTCCATTTCCTCATCTGTATCATTTATCCTTCTCTAGAAATCATTTTGTTTCTGACTTTTTTATTTGGTTGGGGAGCCCGGTTTCCTTTTTCTTCGGGTTTAATCGCTCTTTGACTGATAGGGAAGCTACAAATGTCATCTCTTTGCTGTCGTTGGGGAAGTTTAACTTTAGATATGGGAGAAAGGATCTACTTGTCTAGAATCTCAACCCTCTGGAGGGATTCTTTTGTAATTCCATTTTTTGTTGTCTGGTGAATCCTTCTCCTTCTCAGTAGTATGTTTTTCAGCCCTTAGAGGATTAAGATTCTTGAGAAGGAGAGATCTTTACCTGGAAAATTTTACATGAACGTATGAACATTTTGGATATGCTCTCAAGGAGGAAGAGGTTGTCCTCGTTAGGGGGCCCTTTTTTGTATTATGTTGGAAGGTGGGTAAAGACTTGGATCACATCCTTTGGAGAGTTGCACACTATGTCTAGAATTTGGTCTTCCATAAATTTGGTTTTACTTTGTGTTTATCTCAATGAAAGTTCTTGCATTATCTAAAAAAGAAAAAAAAAGTTCTTGCTTAATGGAGATATATATATAGAAACAGAACAGTCCAAGAAAGAAGATTTGGGGCTCAAGAAAGGAGACCAGTCCAAGAATATCAATAACCTTTTCCAAGAAACCAAGATTACTATAAAAAACTTCAAGATTGGAGTTCTACCGATGATGAGCTGCAAGAAAGGATAGTAAACAATCATAACAGAAGGTTCCGACCACATGCTGATGGTAGGAGAAAAAAAACCAGCAGTTGGTATAGACAAGAAAATCAATTGTACTTCCATAAACAATGTTGGAGTTCTGATTCAAGTGATTCGGAAGAAGAATTTCAGCATTCAAATTTTGGCCATGCTCGATTGTCTCGAAAAATCTATTGTCATCCAAATTGGAAAAGTGATTCTAGTGACTCCGATGATGTTTCTAAAACAGTTTGGGAGAGAATAAGAAGGTGACAATATCAAAAAATGGCCCAACGATCCAATCAAACCCATTTTCCAAGAAATCAACTTTCATTGGGGAAAATGACTCAACATGTAGATCAACCATCAATTTATTTGCAAGAGTCCAATGACATTGGTTTCATATACAGAAGAAAAAACAAAGAAATCACAGTTGGGAAATTATCAAATAGAAAATCATGAAGATAAAATTGAAGAACAAGAATCTGAAAATGTTGATTTGGAAATGATCATAAGTGATGAAAAATCCAACGAAGAAGATTCTTGTTCTTCAATTTTATCTTCAAGATTTTCTATTTGAAAATTTTCCAACCGTGATTTCTTTGTCTTCTCTTCTGTATATGAAACCTAGTGAATAATAAAGAAAATATGATTCTTGAAGGATTTTCTTTGAAAGTTAATTCTTTTGAAATTGCTTATTTGAAGACGGTTTTAAGTGAGATTGAAGGGAACATCTTTTTCGGGTTTACGGCTGATGGAGTGATTCATCATTTAGTGGCGATGTTTGATTTTTTTTGTCTCCATTTTATTCCTTCAATCACATTATTTTTGTCCAAAACGTAGGAGGTTGGTTTGGTCATACCCATTGTGCTTGATGGATTTCATCTCTCATACCAAACTCGGGACAAGTTTGATACTAGGGTAGGGGGTGGAATGATGTAAACTGTCTTTACTTACTGTTATATTTTCACTAGTCGTTTAGCAACAATTACTGTTATGCTTTTATTTATTGTTAGTTAGTTAAAACTATCTTAGTTACTTTGTAACCAACTACTTCTACATTTTCCCTATAAATAAAGCAACTCCTCTCACATTGAGAGGCAGAACATAACATTCAAATAAAAGACTCTTTGGTTTCACACCAGCTAGAGTTACAAAATATTGTTAATTATTTGGTAGTGGTACGTTTTTAATAAGTTTTAATAATAGTGATTGAGTTGTTGAATGAACTATTTGTAGAAAAACTATGTTTATGACATACCAAGATTATTTCCCTCCGAAGTGTTCTTTAGCGTTATCCTTTGACTTGATCGCACCACACAAACAAAATGGCCTAGAATAAGTGATAACAATTTCATGGCAAAAAAAAGCATAGCTCATCTAACATCTATTTGTATTGGTGACCACAAACCCTGGGGTTTTAATCCCCCAAGTCCCTCTTGTACTCAAGTGTTAAATATTCATGTTAACTTGTCTCTCATCCTCTCCTGATTTTTATATATATATTTTCACTCTCTATTGTAGACTTTTTTCTTCCATTAGCCAAAAAGACTTTTCCCCGTCTATGAAACCATTAAGTGTTTTTGTTTGAATAGAAGAAAAGTGGTGTTAAGACCGGAGTGTAATTGTTGTTCTGCTTATTTGTAACTGCTATCATATAGTAGGTTCCTGAGGGCCTCCCATCCCCAGGCATTATTTACGTTCTATCGGCAAAATTTCCCAATCAATGTAGGCTATTCTGCAACTGAAATTTAACTTTTCTTGATGATTCTAGTTTGATTTTACCCATACGAAAACTTCTGTGACTGCTCTCCTTTGTTGATTATTGTACTCTTTTGGATTTTAGCGCATTATCTTAGTTAGTATTCCTATCAAATTTTGCAAGTTTTCATCAAGCTAGGATTTCAAGACCTTAAATTTCAATTTTCATGTTTGCCATAACAGTAGATAATTAAAAGGTTTGGTACTTTGGTTGATCACCTTCAGTCTACTCTCTAATTTTTGGAGCTTCATGAATGATGCAACAGTGTTTTTGCAAAGATTTTGACAAGAGTAATAAATAAGTTTGAGGACTACTTATCATATAATTTCATAATATTGTCCATTTCATTTGATAGGCAACGATGACTAGGGGCCTAAGCTCTGTATATAATTTTTCATAGTTAAGTATTTCCATGGATGTGATTTTTTGGCTTTGAATCAAACTTACTTGATTCTCATCTATCGGAAGAATTATAAGTTAATCAATTCAAGACAATTAAACGCTGGGTACCTTTTGGTTAGTTGGTGGGCTTTGGTCTCCTTTGTATTCCCCATGTTTTCAATGTATGGCTGTGGCATGAACCTTGTTGCGTTTCAGATATTTTTTCTCCATTGTTGCCCTTGATAATGCACATGACTGAAATTGGCTTTGTGAATTTGCAGACCATACTCAATCCCCTCTACTTGCCTGGATCACGTGTCACGTCTTCACATTTTGACACAAAAGTTCGTGCACTCGCAAGGAAGTATCTCTAG

mRNA sequence

ATGTTACTTCACGACTCTCGCAATGATGATGGAATTAAGAGCTTTTTTCAAGAGGTTCACGAGCTTTACATAAAGACCATACTCAATCCCCTCTACTTGCCTGGATCACGTGTCACGTCTTCACATTTTGACACAAAAGTTCGTGCACTCGCAAGGAAGTATCTCTAG

Coding sequence (CDS)

ATGTTACTTCACGACTCTCGCAATGATGATGGAATTAAGAGCTTTTTTCAAGAGGTTCACGAGCTTTACATAAAGACCATACTCAATCCCCTCTACTTGCCTGGATCACGTGTCACGTCTTCACATTTTGACACAAAAGTTCGTGCACTCGCAAGGAAGTATCTCTAG

Protein sequence

MLLHDSRNDDGIKSFFQEVHELYIKTILNPLYLPGSRVTSSHFDTKVRALARKYL*
Homology
[Close]
BLAST of Csa2G338810 vs. Swiss-Prot
Match: TRS20_SCHPO (Transport protein particle 20 kDa subunit OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=trs20 PE=3 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 5.1e-12
Identity = 31/55 (56.36%), Postives = 40/55 (72.73%), Query Frame = 1 

Query: 1   MLLHDSRNDDGIKSFFQEVHELYIKTILNPLYLPGSRVTSSHFDTKVRALARKYL 56
           MLLH +++ D IK FFQE+HELYIKT+++P Y P   + S  FD KVR++AR+YL
Sbjct: 82  MLLHQNQSADNIKLFFQELHELYIKTLMSPFYQPNQPIRSQAFDLKVRSIARRYL 136

[Close]
BLAST of Csa2G338810 vs. Swiss-Prot
Match: TPPC2_BOVIN (Trafficking protein particle complex subunit 2 OS=Bos taurus GN=TRAPPC2 PE=2 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 2.2e-10
Identity = 29/55 (52.73%), Postives = 39/55 (70.91%), Query Frame = 1 

Query: 1   MLLHDSRNDDGIKSFFQEVHELYIKTILNPLYLPGSRVTSSHFDTKVRALARKYL 56
           ++LHD R +DGIK+FF +V++LYIK  +NP Y P S + SS FD KV+ L +K+L
Sbjct: 84  IMLHDVRQEDGIKNFFTDVYDLYIKFAMNPFYEPNSPIRSSAFDRKVQFLGKKHL 138

[Close]
BLAST of Csa2G338810 vs. Swiss-Prot
Match: TPPC2_CANLF (Trafficking protein particle complex subunit 2 OS=Canis lupus familiaris GN=TRAPPC2 PE=3 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 2.2e-10
Identity = 29/55 (52.73%), Postives = 39/55 (70.91%), Query Frame = 1 

Query: 1   MLLHDSRNDDGIKSFFQEVHELYIKTILNPLYLPGSRVTSSHFDTKVRALARKYL 56
           ++LHD R +DGIK+FF +V++LYIK  +NP Y P S + SS FD KV+ L +K+L
Sbjct: 84  IMLHDIRQEDGIKNFFTDVYDLYIKFAMNPFYEPNSPIRSSAFDRKVQFLGKKHL 138

[Close]
BLAST of Csa2G338810 vs. Swiss-Prot
Match: TPPC2_MOUSE (Trafficking protein particle complex subunit 2 OS=Mus musculus GN=Trappc2 PE=1 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 2.2e-10
Identity = 29/55 (52.73%), Postives = 39/55 (70.91%), Query Frame = 1 

Query: 1   MLLHDSRNDDGIKSFFQEVHELYIKTILNPLYLPGSRVTSSHFDTKVRALARKYL 56
           ++LHD R +DGIK+FF +V++LYIK  +NP Y P S + SS FD KV+ L +K+L
Sbjct: 84  IMLHDVRQEDGIKNFFTDVYDLYIKFAMNPFYEPNSPIRSSAFDRKVQFLGKKHL 138

[Close]
BLAST of Csa2G338810 vs. Swiss-Prot
Match: TPPC2_NEMVE (Probable trafficking protein particle complex subunit 2 OS=Nematostella vectensis GN=v1g94938 PE=3 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 2.2e-10
Identity = 27/55 (49.09%), Postives = 40/55 (72.73%), Query Frame = 1 

Query: 1   MLLHDSRNDDGIKSFFQEVHELYIKTILNPLYLPGSRVTSSHFDTKVRALARKYL 56
           M+LHD +NDDGIK+FF +V+E +IK ++NP Y   S++ S++FD KV   A+K++
Sbjct: 97  MMLHDVKNDDGIKNFFSDVYETFIKVLMNPFYEINSKIKSANFDKKVLLAAKKHI 151

[Close]
BLAST of Csa2G338810 vs. TrEMBL
Match: A0A0A0LN59_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G338810 PE=4 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 5.9e-23
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 1 

Query: 1  MLLHDSRNDDGIKSFFQEVHELYIKTILNPLYLPGSRVTSSHFDTKVRALARKYL 56
          MLLHDSRNDDGIKSFFQEVHELYIKTILNPLYLPGSRVTSSHFDTKVRALARKYL
Sbjct: 1  MLLHDSRNDDGIKSFFQEVHELYIKTILNPLYLPGSRVTSSHFDTKVRALARKYL 55

[Close]
BLAST of Csa2G338810 vs. TrEMBL
Match: A0A0R0KH89_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_04G207300 PE=4 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 1.3e-22
Identity = 53/55 (96.36%), Postives = 55/55 (100.00%), Query Frame = 1 

Query: 1   MLLHDSRNDDGIKSFFQEVHELYIKTILNPLYLPGSRVTSSHFDTKVRALARKYL 56
           MLLHDSRNDDGIKSFFQEVHELYIKT+LNPLYLPGSR+TSSHFDTKVRALARKYL
Sbjct: 102 MLLHDSRNDDGIKSFFQEVHELYIKTLLNPLYLPGSRITSSHFDTKVRALARKYL 156

[Close]
BLAST of Csa2G338810 vs. TrEMBL
Match: A0A0B2R9I4_GLYSO (Trafficking protein particle complex subunit 2 OS=Glycine soja GN=glysoja_012851 PE=4 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 1.3e-22
Identity = 53/55 (96.36%), Postives = 55/55 (100.00%), Query Frame = 1 

Query: 1   MLLHDSRNDDGIKSFFQEVHELYIKTILNPLYLPGSRVTSSHFDTKVRALARKYL 56
           MLLHDSRNDDGIKSFFQEVHELYIKT+LNPLYLPGSR+TSSHFDTKVRALARKYL
Sbjct: 816 MLLHDSRNDDGIKSFFQEVHELYIKTLLNPLYLPGSRITSSHFDTKVRALARKYL 870

[Close]
BLAST of Csa2G338810 vs. TrEMBL
Match: A0A072VP19_MEDTR (Trafficking protein particle complex subunit-like protein OS=Medicago truncatula GN=MTR_1g102650 PE=4 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 1.3e-22
Identity = 53/55 (96.36%), Postives = 55/55 (100.00%), Query Frame = 1 

Query: 1   MLLHDSRNDDGIKSFFQEVHELYIKTILNPLYLPGSRVTSSHFDTKVRALARKYL 56
           MLLHDSRNDDGIKSFFQEVHELYIKT+LNPLYLPGSR+TSSHFDTKVRALARKYL
Sbjct: 114 MLLHDSRNDDGIKSFFQEVHELYIKTLLNPLYLPGSRITSSHFDTKVRALARKYL 168

[Close]
BLAST of Csa2G338810 vs. TrEMBL
Match: A0A068UJQ5_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00027836001 PE=4 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 1.3e-22
Identity = 53/55 (96.36%), Postives = 55/55 (100.00%), Query Frame = 1 

Query: 1  MLLHDSRNDDGIKSFFQEVHELYIKTILNPLYLPGSRVTSSHFDTKVRALARKYL 56
          MLLHDSRNDDGIKSFFQEVHELYIKT+LNPLYLPGSR+TSSHFDTKVRALARKYL
Sbjct: 1  MLLHDSRNDDGIKSFFQEVHELYIKTLLNPLYLPGSRITSSHFDTKVRALARKYL 55

[Close]
BLAST of Csa2G338810 vs. TAIR10
Match: AT1G80500.1 (AT1G80500.1 SNARE-like superfamily protein)

HSP 1 Score: 109.0 bits (271), Expect = 9.6e-25
Identity = 51/55 (92.73%), Postives = 52/55 (94.55%), Query Frame = 1 

Query: 1   MLLHDSRNDDGIKSFFQEVHELYIKTILNPLYLPGSRVTSSHFDTKVRALARKYL 56
           MLLHDSRN+DGIKSFFQEVHELYIK +LNPLYLPGSR+TSSHFDTKVRALARKYL
Sbjct: 81  MLLHDSRNEDGIKSFFQEVHELYIKILLNPLYLPGSRITSSHFDTKVRALARKYL 135

[Close]
BLAST of Csa2G338810 vs. NCBI nr
Match: gi|449459192|ref|XP_004147330.1| (PREDICTED: transport protein particle 20 kDa subunit isoform X2 [Cucumis sativus])

HSP 1 Score: 114.0 bits (284), Expect = 8.5e-23
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 1 

Query: 1   MLLHDSRNDDGIKSFFQEVHELYIKTILNPLYLPGSRVTSSHFDTKVRALARKYL 56
           MLLHDSRNDDGIKSFFQEVHELYIKTILNPLYLPGSRVTSSHFDTKVRALARKYL
Sbjct: 81  MLLHDSRNDDGIKSFFQEVHELYIKTILNPLYLPGSRVTSSHFDTKVRALARKYL 135

[Close]
BLAST of Csa2G338810 vs. NCBI nr
Match: gi|778670342|ref|XP_011649448.1| (PREDICTED: transport protein particle 20 kDa subunit isoform X1 [Cucumis sativus])

HSP 1 Score: 114.0 bits (284), Expect = 8.5e-23
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 1 

Query: 1   MLLHDSRNDDGIKSFFQEVHELYIKTILNPLYLPGSRVTSSHFDTKVRALARKYL 56
           MLLHDSRNDDGIKSFFQEVHELYIKTILNPLYLPGSRVTSSHFDTKVRALARKYL
Sbjct: 82  MLLHDSRNDDGIKSFFQEVHELYIKTILNPLYLPGSRVTSSHFDTKVRALARKYL 136

[Close]
BLAST of Csa2G338810 vs. NCBI nr
Match: gi|700207118|gb|KGN62237.1| (hypothetical protein Csa_2G338810 [Cucumis sativus])

HSP 1 Score: 114.0 bits (284), Expect = 8.5e-23
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 1 

Query: 1  MLLHDSRNDDGIKSFFQEVHELYIKTILNPLYLPGSRVTSSHFDTKVRALARKYL 56
          MLLHDSRNDDGIKSFFQEVHELYIKTILNPLYLPGSRVTSSHFDTKVRALARKYL
Sbjct: 1  MLLHDSRNDDGIKSFFQEVHELYIKTILNPLYLPGSRVTSSHFDTKVRALARKYL 55

[Close]
BLAST of Csa2G338810 vs. NCBI nr
Match: gi|659121801|ref|XP_008460820.1| (PREDICTED: trafficking protein particle complex subunit 2 [Cucumis melo])

HSP 1 Score: 113.6 bits (283), Expect = 1.1e-22
Identity = 54/55 (98.18%), Postives = 55/55 (100.00%), Query Frame = 1 

Query: 1   MLLHDSRNDDGIKSFFQEVHELYIKTILNPLYLPGSRVTSSHFDTKVRALARKYL 56
           MLLHDSRNDDGIKSFFQEVHELYIKTILNPLYLPGSR+TSSHFDTKVRALARKYL
Sbjct: 81  MLLHDSRNDDGIKSFFQEVHELYIKTILNPLYLPGSRITSSHFDTKVRALARKYL 135

[Close]
BLAST of Csa2G338810 vs. NCBI nr
Match: gi|947115658|gb|KRH63960.1| (hypothetical protein GLYMA_04G207300 [Glycine max])

HSP 1 Score: 112.8 bits (281), Expect = 1.9e-22
Identity = 53/55 (96.36%), Postives = 55/55 (100.00%), Query Frame = 1 

Query: 1   MLLHDSRNDDGIKSFFQEVHELYIKTILNPLYLPGSRVTSSHFDTKVRALARKYL 56
           MLLHDSRNDDGIKSFFQEVHELYIKT+LNPLYLPGSR+TSSHFDTKVRALARKYL
Sbjct: 102 MLLHDSRNDDGIKSFFQEVHELYIKTLLNPLYLPGSRITSSHFDTKVRALARKYL 156

The following BLAST results are available for this feature:
BLAST of Csa2G338810 vs. Swiss-Prot
Match NameE-valueIdentityDescription
TRS20_SCHPO5.1e-1256.36Transport protein particle 20 kDa subunit OS=Schizosaccharomyces pombe (strain 9... [more]
TPPC2_BOVIN2.2e-1052.73Trafficking protein particle complex subunit 2 OS=Bos taurus GN=TRAPPC2 PE=2 SV=... [more]
TPPC2_CANLF2.2e-1052.73Trafficking protein particle complex subunit 2 OS=Canis lupus familiaris GN=TRAP... [more]
TPPC2_MOUSE2.2e-1052.73Trafficking protein particle complex subunit 2 OS=Mus musculus GN=Trappc2 PE=1 S... [more]
TPPC2_NEMVE2.2e-1049.09Probable trafficking protein particle complex subunit 2 OS=Nematostella vectensi... [more]
BLAST of Csa2G338810 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LN59_CUCSA5.9e-23100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_2G338810 PE=4 SV=1[more]
A0A0R0KH89_SOYBN1.3e-2296.36Uncharacterized protein OS=Glycine max GN=GLYMA_04G207300 PE=4 SV=1[more]
A0A0B2R9I4_GLYSO1.3e-2296.36Trafficking protein particle complex subunit 2 OS=Glycine soja GN=glysoja_012851... [more]
A0A072VP19_MEDTR1.3e-2296.36Trafficking protein particle complex subunit-like protein OS=Medicago truncatula... [more]
A0A068UJQ5_COFCA1.3e-2296.36Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00027836001 PE=4 SV=1[more]
BLAST of Csa2G338810 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G80500.19.6e-2592.73 SNARE-like superfamily protein[more]
BLAST of Csa2G338810 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449459192|ref|XP_004147330.1|8.5e-23100.00PREDICTED: transport protein particle 20 kDa subunit isoform X2 [Cucumis sativus... [more]
gi|778670342|ref|XP_011649448.1|8.5e-23100.00PREDICTED: transport protein particle 20 kDa subunit isoform X1 [Cucumis sativus... [more]
gi|700207118|gb|KGN62237.1|8.5e-23100.00hypothetical protein Csa_2G338810 [Cucumis sativus][more]
gi|659121801|ref|XP_008460820.1|1.1e-2298.18PREDICTED: trafficking protein particle complex subunit 2 [Cucumis melo][more]
gi|947115658|gb|KRH63960.1|1.9e-2296.36hypothetical protein GLYMA_04G207300 [Glycine max][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR006722Sedlin
IPR011012Longin-like_dom_sf
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
Vocabulary: Biological Process
TermDefinition
GO:0006888ER to Golgi vesicle-mediated transport
GO:0006810transport
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006888 ER to Golgi vesicle-mediated transport
biological_process GO:0006810 transport
cellular_component GO:0005737 cytoplasm
cellular_component GO:0005622 intracellular
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU101384cucumber EST collection version 3.0transcribed_cluster
CU132805cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa2G338810.1Csa2G338810.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU101384CU101384transcribed_cluster
CU132805CU132805transcribed_cluster


InterPro
Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006722Trafficking protein particle complex subunit 2PANTHERPTHR12403MBP-1 INTERACTING PROTEIN-2Acoord: 1..55
score: 3.1
IPR006722Trafficking protein particle complex subunit 2PFAMPF04628Sedlin_Ncoord: 1..53
score: 2.6
IPR011012Longin-like domainunknownSSF64356SNARE-likecoord: 1..55
score: 2.93
NoneNo IPR availableGENE3DG3DSA:3.30.450.70coord: 1..55
score: 6.0

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa2G338810Cla97C02G026260Watermelon (97103) v2cuwmbB117
Csa2G338810Bhi10G001392Wax gourdcuwgoB184
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa2G338810Cucurbita pepo (Zucchini)cpecuB271
Csa2G338810Bottle gourd (USVL1VR-Ls)culsiB097
Csa2G338810Cucumber (Gy14) v2cgybcuB058
Csa2G338810Melon (DHL92) v3.6.1cumedB085
Csa2G338810Cucumber (Gy14) v1cgycuB324
Csa2G338810Cucurbita maxima (Rimu)cmacuB545
Csa2G338810Cucurbita moschata (Rifu)cmocuB535
Csa2G338810Melon (DHL92) v3.5.1cumeB095
Csa2G338810Watermelon (Charleston Gray)cuwcgB120
Csa2G338810Watermelon (97103) v1cuwmB152