Csa2G317410 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa2G317410
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr2 : 14828697 .. 14829703 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GTACTGGATCTACTCGCATTTACAAGCCTTCTCTACAGGTCTTTAAATAGACTGATTATGCAGTGATAACCGGAGCTAACTTCCTAACCAACCAATGGTTAGTTGCTGTTTAAATAATAATAGAGGATCAGGAAAAGCAAAGTCCTCTACACTGTGCCTGTAAAATGAAGGATTCAACTGTGTGTAAATTGAATAAACAGTAAGAACCCGGCCAGTAGAATATTCTTGTTATTTAAATTAACCCATTCTTCAAAGACCATGTATAAATCTAGTTGTCTTCCAGAGTTTAATTCAATTGACACTTGTATAGACGGAGAACTAAGAGGTTCTAAGTTCAAATCCTCCACCCTAATTTTGTACGTAAATATATATACATATATATATCAACCCTGTTCATGCCTCTATGTTGAACAGTTGTATTCAAGAGTAACATTTTCTTTAGTCATTCCATAGGGTTGTCATGTATTGGTATATTAATATCAATTTATTCGTTTATTATAGCTATTGTTTATTTAGACAGCCCATTGGCCATAGCTTATTGAGATTTCATTTGTTTTCAGACGACAGGTATTTCAGCCACAAGACCTAGAGGCGGTTAGATGAACTTTTACAACCTTGCAAGTTTGCTAGTTGGAGATTTGGCAGGATACAGCTTAGCGAAATGTAATGGTATTATTGCTGGTGGTATAAAGTTGAGGTTGGGTATGGCTACTGAACTAGCAATTACACAGTCAAGGAATGGTGTGAAGACATTTTTTCATTTGCTTGCACTTGAAATTCTCCAGTCTCCATTCTCCATTCTCCATTCCCACATTTTTCAATTTGTGTACGAGTGCTTTTCTTATTTTCATGAGAGGAACTCGATTAATTTATTTCCCACGATGGAATTTAGAGGGGGAAAAGAAAAAGAATATCTATTTCAGACTTTCAGCGGCCTATTATAATTCATTTGGTGGTCTGCATCTTCTTTACAGCTTATATCTCGTAATTATTAAGTTACAGTGAAA

mRNA sequence

ATGAACTTTTACAACCTTGCAAGTTTGCTAGTTGGAGATTTGGCAGGATACAGCTTAGCGAAATGTAATGGTATTATTGCTGGTGGTATAAAGTTGAGGTTGGGTATGGCTACTGAACTAGCAATTACACAGTCAAGGAATGGTGTGAAGACATTTTTTCATTTGCTTGCACTTGAAATTCTCCAGTCTCCATTCTCCATTCTCCATTCCCACATTTTTCAATTTGTGTACGAGTGCTTTTCTTATTTTCATGAGAGGAACTCGATTAATTTATTTCCCACGATGGAATTTAGAGGGGGAAAAGAAAAAGAATATCTATTTCAGACTTTCAGCGGCCTATTATAA

Coding sequence (CDS)

ATGAACTTTTACAACCTTGCAAGTTTGCTAGTTGGAGATTTGGCAGGATACAGCTTAGCGAAATGTAATGGTATTATTGCTGGTGGTATAAAGTTGAGGTTGGGTATGGCTACTGAACTAGCAATTACACAGTCAAGGAATGGTGTGAAGACATTTTTTCATTTGCTTGCACTTGAAATTCTCCAGTCTCCATTCTCCATTCTCCATTCCCACATTTTTCAATTTGTGTACGAGTGCTTTTCTTATTTTCATGAGAGGAACTCGATTAATTTATTTCCCACGATGGAATTTAGAGGGGGAAAAGAAAAAGAATATCTATTTCAGACTTTCAGCGGCCTATTATAA

Protein sequence

MNFYNLASLLVGDLAGYSLAKCNGIIAGGIKLRLGMATELAITQSRNGVKTFFHLLALEILQSPFSILHSHIFQFVYECFSYFHERNSINLFPTMEFRGGKEKEYLFQTFSGLL*
Homology
[Close]
BLAST of Csa2G317410 vs. TrEMBL
Match: A0A0A0LMC0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G317410 PE=4 SV=1)

HSP 1 Score: 231.5 bits (589), Expect = 5.2e-58
Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 1 

Query: 1   MNFYNLASLLVGDLAGYSLAKCNGIIAGGIKLRLGMATELAITQSRNGVKTFFHLLALEI 60
           MNFYNLASLLVGDLAGYSLAKCNGIIAGGIKLRLGMATELAITQSRNGVKTFFHLLALEI
Sbjct: 1   MNFYNLASLLVGDLAGYSLAKCNGIIAGGIKLRLGMATELAITQSRNGVKTFFHLLALEI 60

Query: 61  LQSPFSILHSHIFQFVYECFSYFHERNSINLFPTMEFRGGKEKEYLFQTFSGLL 115
           LQSPFSILHSHIFQFVYECFSYFHERNSINLFPTMEFRGGKEKEYLFQTFSGLL
Sbjct: 61  LQSPFSILHSHIFQFVYECFSYFHERNSINLFPTMEFRGGKEKEYLFQTFSGLL 114

[Close]
BLAST of Csa2G317410 vs. NCBI nr
Match: gi|700207065|gb|KGN62184.1| (hypothetical protein Csa_2G317410 [Cucumis sativus])

HSP 1 Score: 231.5 bits (589), Expect = 7.5e-58
Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 1 

Query: 1   MNFYNLASLLVGDLAGYSLAKCNGIIAGGIKLRLGMATELAITQSRNGVKTFFHLLALEI 60
           MNFYNLASLLVGDLAGYSLAKCNGIIAGGIKLRLGMATELAITQSRNGVKTFFHLLALEI
Sbjct: 1   MNFYNLASLLVGDLAGYSLAKCNGIIAGGIKLRLGMATELAITQSRNGVKTFFHLLALEI 60

Query: 61  LQSPFSILHSHIFQFVYECFSYFHERNSINLFPTMEFRGGKEKEYLFQTFSGLL 115
           LQSPFSILHSHIFQFVYECFSYFHERNSINLFPTMEFRGGKEKEYLFQTFSGLL
Sbjct: 61  LQSPFSILHSHIFQFVYECFSYFHERNSINLFPTMEFRGGKEKEYLFQTFSGLL 114

The following BLAST results are available for this feature:
BLAST of Csa2G317410 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LMC0_CUCSA5.2e-58100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_2G317410 PE=4 SV=1[more]
BLAST of Csa2G317410 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700207065|gb|KGN62184.1|7.5e-58100.00hypothetical protein Csa_2G317410 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa2G317410.1Csa2G317410.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa2G317410CsGy2G016590Cucumber (Gy14) v2cgybcuB059
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa2G317410Silver-seed gourdcarcuB0703
Csa2G317410Cucumber (Gy14) v1cgycuB534
Csa2G317410Cucurbita maxima (Rimu)cmacuB695
Csa2G317410Cucurbita moschata (Rifu)cmocuB685
Csa2G317410Watermelon (Charleston Gray)cuwcgB167
Csa2G317410Watermelon (97103) v1cuwmB109
Csa2G317410Cucurbita pepo (Zucchini)cpecuB387
Csa2G317410Bottle gourd (USVL1VR-Ls)culsiB146