Csa2G297170 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa2G297170
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr2 : 14131979 .. 14132329 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGGGTCGTTTTGTAAACGGACATTCACCAATGCCCTTCGTCGGTTTTCATTTCATCTCTCTTCTTACGCGCGCGGTGATATCGCTCTTCTTCTTCTTTCATCTTCTTCCCAAGCTTCTCAAATCTGACTATACTCTCGACTTTTCATCTCTTTCAGATCTCACTTCCTTGCCCATTTCCCAGATCCTTAATCCTCACTTCATTCTTCATTCTTCATTCTTCTCCAACCTTCAAACCCTCCGCTCTTGTATGATTCCACCAACTAGATCTCTGCTCTTACCTCTCTACAACAAACTATCGACTCTCTTCAGAGATGCTTCGACATGGGTTTTCCGATTTCAGCTTTGA

mRNA sequence

ATGAAGGGTCGTTTTGTAAACGGACATTCACCAATGCCCTTCGTCGGTTTTCATTTCATCTCTCTTCTTACGCGCGCGGTGATATCGCTCTTCTTCTTCTTTCATCTTCTTCCCAAGCTTCTCAAATCTGACTATACTCTCGACTTTTCATCTCTTTCAGATCTCACTTCCTTGCCCATTTCCCAGATCCTTAATCCTCACTTCATTCTTCATTCTTCATTCTTCTCCAACCTTCAAACCCTCCGCTCTTGTATGATTCCACCAACTAGATCTCTGCTCTTACCTCTCTACAACAAACTATCGACTCTCTTCAGAGATGCTTCGACATGGGTTTTCCGATTTCAGCTTTGA

Coding sequence (CDS)

ATGAAGGGTCGTTTTGTAAACGGACATTCACCAATGCCCTTCGTCGGTTTTCATTTCATCTCTCTTCTTACGCGCGCGGTGATATCGCTCTTCTTCTTCTTTCATCTTCTTCCCAAGCTTCTCAAATCTGACTATACTCTCGACTTTTCATCTCTTTCAGATCTCACTTCCTTGCCCATTTCCCAGATCCTTAATCCTCACTTCATTCTTCATTCTTCATTCTTCTCCAACCTTCAAACCCTCCGCTCTTGTATGATTCCACCAACTAGATCTCTGCTCTTACCTCTCTACAACAAACTATCGACTCTCTTCAGAGATGCTTCGACATGGGTTTTCCGATTTCAGCTTTGA

Protein sequence

MKGRFVNGHSPMPFVGFHFISLLTRAVISLFFFFHLLPKLLKSDYTLDFSSLSDLTSLPISQILNPHFILHSSFFSNLQTLRSCMIPPTRSLLLPLYNKLSTLFRDASTWVFRFQL*

Homology

[Close]

BLAST of Csa2G297170 vs. TrEMBL
Match: A0A0A0LJY2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G297170 PE=4 SV=1)

HSP 1 Score: 236.1 bits (601), Expect = 2.1e-59
Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 1


Query: 1   MKGRFVNGHSPMPFVGFHFISLLTRAVISLFFFFHLLPKLLKSDYTLDFSSLSDLTSLPI 60
           MKGRFVNGHSPMPFVGFHFISLLTRAVISLFFFFHLLPKLLKSDYTLDFSSLSDLTSLPI
Sbjct: 1   MKGRFVNGHSPMPFVGFHFISLLTRAVISLFFFFHLLPKLLKSDYTLDFSSLSDLTSLPI 60

Query: 61  SQILNPHFILHSSFFSNLQTLRSCMIPPTRSLLLPLYNKLSTLFRDASTWVFRFQL 117
           SQILNPHFILHSSFFSNLQTLRSCMIPPTRSLLLPLYNKLSTLFRDASTWVFRFQL
Sbjct: 61  SQILNPHFILHSSFFSNLQTLRSCMIPPTRSLLLPLYNKLSTLFRDASTWVFRFQL 116

[Close]

BLAST of Csa2G297170 vs. NCBI nr
Match: gi|700206974|gb|KGN62093.1| (hypothetical protein Csa_2G297170 [Cucumis sativus])

HSP 1 Score: 236.1 bits (601), Expect = 3.1e-59
Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 1


Query: 1   MKGRFVNGHSPMPFVGFHFISLLTRAVISLFFFFHLLPKLLKSDYTLDFSSLSDLTSLPI 60
           MKGRFVNGHSPMPFVGFHFISLLTRAVISLFFFFHLLPKLLKSDYTLDFSSLSDLTSLPI
Sbjct: 1   MKGRFVNGHSPMPFVGFHFISLLTRAVISLFFFFHLLPKLLKSDYTLDFSSLSDLTSLPI 60

Query: 61  SQILNPHFILHSSFFSNLQTLRSCMIPPTRSLLLPLYNKLSTLFRDASTWVFRFQL 117
           SQILNPHFILHSSFFSNLQTLRSCMIPPTRSLLLPLYNKLSTLFRDASTWVFRFQL
Sbjct: 61  SQILNPHFILHSSFFSNLQTLRSCMIPPTRSLLLPLYNKLSTLFRDASTWVFRFQL 116

The following BLAST results are available for this feature:

BLAST of Csa2G297170 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LJY2_CUCSA	2.1e-59	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G297170 PE=4 SV=1	[more]

BLAST of Csa2G297170 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700206974\|gb\|KGN62093.1\|	3.1e-59	100.00	hypothetical protein Csa_2G297170 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
CU129817	cucumber EST collection version 3.0	transcribed_cluster
CU163317	cucumber EST collection version 3.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa2G297170.1	Csa2G297170.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
CU129817	CU129817	transcribed_cluster
CU163317	CU163317	transcribed_cluster

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa2G297170	Melon (DHL92) v3.6.1	cumedB090
Csa2G297170	Melon (DHL92) v3.6.1	cumedB152
Csa2G297170	Silver-seed gourd	carcuB0489
Csa2G297170	Silver-seed gourd	carcuB1072
Csa2G297170	Watermelon (97103) v2	cuwmbB100
Csa2G297170	Watermelon (97103) v2	cuwmbB120
Csa2G297170	Wax gourd	cuwgoB175
Csa2G297170	Cucumber (Chinese Long) v2	cucuB074
Csa2G297170	Cucumber (Gy14) v1	cgycuB115
Csa2G297170	Cucumber (Gy14) v1	cgycuB358
Csa2G297170	Cucurbita maxima (Rimu)	cmacuB543
Csa2G297170	Cucurbita maxima (Rimu)	cmacuB582
Csa2G297170	Cucurbita maxima (Rimu)	cmacuB591
Csa2G297170	Cucurbita maxima (Rimu)	cmacuB653
Csa2G297170	Cucurbita moschata (Rifu)	cmocuB532
Csa2G297170	Cucurbita moschata (Rifu)	cmocuB580
Csa2G297170	Cucurbita moschata (Rifu)	cmocuB641
Csa2G297170	Melon (DHL92) v3.5.1	cumeB099
Csa2G297170	Melon (DHL92) v3.5.1	cumeB159
Csa2G297170	Watermelon (Charleston Gray)	cuwcgB116
Csa2G297170	Watermelon (Charleston Gray)	cuwcgB124
Csa2G297170	Watermelon (97103) v1	cuwmB141
Csa2G297170	Cucurbita pepo (Zucchini)	cpecuB268
Csa2G297170	Cucurbita pepo (Zucchini)	cpecuB707
Csa2G297170	Bottle gourd (USVL1VR-Ls)	culsiB093
Csa2G297170	Cucumber (Gy14) v2	cgybcuB056
Csa2G297170	Cucumber (Gy14) v2	cgybcuB251