Csa2G252080 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa2G252080
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr2 : 12478030 .. 12478932 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGGCATCGGTTTGCTCTCACAGGTTGGTCATCTACTAGTTAAATCTACTCTCTCTACCCTTGTCATTATCTTAGTTTTTTTGTACATATGAAATACATTATTACATTGATTTTGTCGAGATGCTCCTTATGTCTGGAATTCATGGTTTCATGTTATATAGTCAATCATCCAACTGATCTTCTTCTTGAAAACTTTGGGGCTCTAGGTTGAAGTATGTAGCCTGCCTATATAGCACTGTAGCTCCTATAATTTCTCATTAAGGGTGAGTTTGGCCATCCATTTGATAGGAATTGCTACTAGGAAATAATCAATTAGAGTATTAAGGGGATATTAGCAATTAGTTAGAGAAATGGTTAGAGTAGCAATAGGAGTATGGAAAGGGAGAGACAAACAGTATATTTATGAGTAATTTAGGGCATGAGGAATCTCAAGATTGGGAAGGTCCAAATATCCCGAAAACTTGGGGTCATTATACACTTTGTTAAAAGATGTATTATTCCACCAAATAAATTTTCTATACTTAGAAAAAACTGTTCTTCAAGTAAATAACCAAGACAAAAACCAATTTAGCCCTATGATTCTTTCTGTTCTTTGACTTTAGCCAAAACTCGAACAAAGCAAAAGGAGAAGTTGTATTAAAACCAATTAAACTTAGGAAAGTAAAAGGTGAAAATGACAATTTTGGTGTGTTCAAGAACTTGGATTTTGGATGATATAATTTTGAATCCTCAATTGTTATTTGCAGAGCCAGAAGTCAATGTAAAGATGCTTCAACCACCAAGAAGTCAGAATGTTCTTCAAAGATTCTCCACCAAACCATTCAAAATTCTATCATCCTTAAAGATGGTAGATAGAAATGGCTTGTTTTCTCTTCTGATTCAATTGTTCGTAGTTACCTAA

mRNA sequence

ATGAGGCATCGGTTTGCTCTCACAGAGCCAGAAGTCAATGTAAAGATGCTTCAACCACCAAGAAGTCAGAATGTTCTTCAAAGATTCTCCACCAAACCATTCAAAATTCTATCATCCTTAAAGATGGTAGATAGAAATGGCTTGTTTTCTCTTCTGATTCAATTGTTCGTAGTTACCTAA

Coding sequence (CDS)

ATGAGGCATCGGTTTGCTCTCACAGAGCCAGAAGTCAATGTAAAGATGCTTCAACCACCAAGAAGTCAGAATGTTCTTCAAAGATTCTCCACCAAACCATTCAAAATTCTATCATCCTTAAAGATGGTAGATAGAAATGGCTTGTTTTCTCTTCTGATTCAATTGTTCGTAGTTACCTAA

Protein sequence

MRHRFALTEPEVNVKMLQPPRSQNVLQRFSTKPFKILSSLKMVDRNGLFSLLIQLFVVT*
Homology
[Close]
BLAST of Csa2G252080 vs. TrEMBL
Match: A0A0A0LLC8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G252080 PE=4 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 5.7e-24
Identity = 59/59 (100.00%), Postives = 59/59 (100.00%), Query Frame = 1 

Query: 1  MRHRFALTEPEVNVKMLQPPRSQNVLQRFSTKPFKILSSLKMVDRNGLFSLLIQLFVVT 60
          MRHRFALTEPEVNVKMLQPPRSQNVLQRFSTKPFKILSSLKMVDRNGLFSLLIQLFVVT
Sbjct: 1  MRHRFALTEPEVNVKMLQPPRSQNVLQRFSTKPFKILSSLKMVDRNGLFSLLIQLFVVT 59

[Close]
BLAST of Csa2G252080 vs. NCBI nr
Match: gi|700206740|gb|KGN61859.1| (hypothetical protein Csa_2G252080 [Cucumis sativus])

HSP 1 Score: 117.5 bits (293), Expect = 8.2e-24
Identity = 59/59 (100.00%), Postives = 59/59 (100.00%), Query Frame = 1 

Query: 1  MRHRFALTEPEVNVKMLQPPRSQNVLQRFSTKPFKILSSLKMVDRNGLFSLLIQLFVVT 60
          MRHRFALTEPEVNVKMLQPPRSQNVLQRFSTKPFKILSSLKMVDRNGLFSLLIQLFVVT
Sbjct: 1  MRHRFALTEPEVNVKMLQPPRSQNVLQRFSTKPFKILSSLKMVDRNGLFSLLIQLFVVT 59

The following BLAST results are available for this feature:
BLAST of Csa2G252080 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LLC8_CUCSA5.7e-24100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_2G252080 PE=4 SV=1[more]
BLAST of Csa2G252080 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700206740|gb|KGN61859.1|8.2e-24100.00hypothetical protein Csa_2G252080 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0006364 rRNA processing
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU095723cucumber EST collection version 3.0transcribed_cluster
CU107195cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa2G252080.1Csa2G252080.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU107195CU107195transcribed_cluster
CU095723CU095723transcribed_cluster


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa2G252080CSPI02G12790Wild cucumber (PI 183967)cpicuB065
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa2G252080Silver-seed gourdcarcuB0341
Csa2G252080Silver-seed gourdcarcuB0463
Csa2G252080Silver-seed gourdcarcuB0838
Csa2G252080Watermelon (97103) v2cuwmbB110
Csa2G252080Watermelon (97103) v2cuwmbB123
Csa2G252080Wax gourdcuwgoB154
Csa2G252080Wax gourdcuwgoB182
Csa2G252080Cucumber (Chinese Long) v2cucuB077
Csa2G252080Cucumber (Gy14) v1cgycuB133
Csa2G252080Cucurbita maxima (Rimu)cmacuB438
Csa2G252080Cucurbita maxima (Rimu)cmacuB542
Csa2G252080Cucurbita maxima (Rimu)cmacuB588
Csa2G252080Cucurbita moschata (Rifu)cmocuB426
Csa2G252080Cucurbita moschata (Rifu)cmocuB495
Csa2G252080Cucurbita moschata (Rifu)cmocuB531
Csa2G252080Cucurbita moschata (Rifu)cmocuB577
Csa2G252080Melon (DHL92) v3.5.1cumeB098
Csa2G252080Melon (DHL92) v3.5.1cumeB102
Csa2G252080Watermelon (Charleston Gray)cuwcgB104
Csa2G252080Watermelon (Charleston Gray)cuwcgB127
Csa2G252080Watermelon (97103) v1cuwmB149
Csa2G252080Watermelon (97103) v1cuwmB155
Csa2G252080Cucurbita pepo (Zucchini)cpecuB232
Csa2G252080Cucurbita pepo (Zucchini)cpecuB267
Csa2G252080Cucurbita pepo (Zucchini)cpecuB540
Csa2G252080Cucurbita pepo (Zucchini)cpecuB704
Csa2G252080Bottle gourd (USVL1VR-Ls)culsiB093
Csa2G252080Bottle gourd (USVL1VR-Ls)culsiB103
Csa2G252080Cucumber (Gy14) v2cgybcuB056
Csa2G252080Cucumber (Gy14) v2cgybcuB295
Csa2G252080Melon (DHL92) v3.6.1cumedB096