Csa2G251480 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa2G251480
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr2 : 12370120 .. 12372993 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACCTCCGTGTTTGGATCAACGGTTTTCTTCACTGCCTCGAGAATGGTGGTTCCGGTTGTTAGATTTTTGTCCGCTGAGTCCTTGCCAGGTGATTGTCCGGCCGCCGCAGATTGTTGGCGTGAGTTCCGGCTACTAAGATCTATGGTGCTTTCTTTGACAGAGGAAGAACTGTTTCATCAGCATTTTCGCAATTCTTCAATAGAACAAGTGATTTCCTCACTGCTTCTCTTGCCAAATCTGTGTCCCTGTTCAGTGTTCATTTGAATTGGTATAATATTTCAATTTTAAAGTACATTTCCTTGTCTTTTCAGACCAACTAACCTGGCTTCCAAGCTCATTTACAAATCTGTCACCCGCCAATGGATTCTCAAACAGGCCCATCATAAACTTGACTCTCAAAATCCTTCTCACGGCGTCGTCGTTGATTCAGGACATCAGAATAACGTTCTTAACGATAAGGTAGGTAGGCCATCGATGAACTCAGTGTAATTTGCAGGAACCATAATCTTAATCACGACAATAAAACTAGTTTTATAAGATGTATAGATGCTATGTTGATTGGATTGCTTATGTTGATTATCTTACCATGTCTATTCCAGCTTAAACTCCAGAGAGAATTGAGAATGTGTAATTTGAATGAGCTGGGTCTGTGATCTTATCAATACCTTCTTGATCGGAGATTACAAAACCCTGCAATAGTTACGTGTGTTCAAATTTAGGGGATTGTCATTGTATAGGCTTATTATTCATGAGGATCTAGTGCAAATACATACCCTGAAGTTTAGTCTGTTCTTAAGCAAATCAGTGACGAGTTCATGGTTTGAATGCATATTCTCACAGTTCCAACTTCAGTAGGAAACCATTATTGTAGAGACACCCTTGATTGTAGAGTGATAGTATCCTGGCGTGTGAATGCGTAACAATCCATGCTTGCTGATAACTGTGTTCTAATTGATACCGCATGTTGTCCTGCCATCGCCTACAAAATAGAAATGCTTTGCACAAGCTGCAACCTTTTCTCTGTTGCAAGGCCAAGAGGTTTTTTGAGTAGGTTTTGTAGAATGGAAAATCTGTCCAAATCTTTAGTGGTTGAAAACTTGCCTTCCAACAACATAAGGAATAACTTTTGAAGAACTAGATGGGGTTTGTCCTTGCAACCCAGCTATGATATCTGTCATTTCTTTGACAATGTCAGGATCTTCACTGTAGCTTTCATAACACCTTCCCCATCTCGTATCTCTACAGACCTGAAATGAAAATGCTCATCGTTCTATTTGAACTAGACAAGTTTATATAAATAAAGGGAAATGAATTTAAGAAAACATACTGCTATGCATGGAGCAAAGACATAATCTATCCCAGTTCATCTAACTTCTTTAGCAGTAGCAGCACCAATCCTTCTTAAAAGTTCAGGTTCCCTGTCACATGAGAAAACTATTTAACCACCAATATCTCCAAATGGCATTGGGAGTTTGTGAAAACAAAGTTTAGATCCTCCTCTCATATATTTTCGCCTGGTTGCACCAAGACCGACATTGTTGAGGAAGATGGTAGCATTGTAGACGCCATTGTGACCATGGACGGCATCAATACCATACATTATTGGAATTCCAAGCCTACTTGATAATGTGGCCTGCTGGAAGGAATTCACCATGTCAATCCACTCCTGTGCAGTAGCCTGTAGAGATGGGGTACTGCCTCCGTTGCACACTGCCAATGGAGTAATCTCTTATGATTTCCGGTGTGGTGGCCGAAGAATCCAACTGTGCCATCTGCCCAACCTTATCTGCTAGAGTCATTCATTCCATCAGGTCCTTGATCCGGATGTTAAGTGGCTGTATAGGGTCCTTATACTTGACAGTCTTCCTCAACAGCCACCAAAGCTGCCCAGCAACAGAGTAAAACCACCATCACCTTCATCTTCTTCTTGGTGAATGGAATCTTACAGGAATTGAGTTCAGATCTATCTTTAGGTTGATTATGCCCTTTTTACTTTGTATGGTCAAGTTGGTAGTCCTTAAATTTTTCTTTCTTCTCCATTTTAGGTAACCTACAACGGATTTTGAAATACTAATTCTTAATCTCGTTTCTATATATGCTCATCTTCTTGGAGAAAGATTTTTAACTTAATTGCTACTTTGTTTTGGATTTGGTGTTGGAATGATAGAACCTCTTGATTTGCCTCAGAAATATTTCTATTTTGAAAACCAAATGGAAAACTTTGACTCTAGAATTAGTGTTGATATAAAGAATGAAAGTTGCTGACTGTTGATTAGCAACAATAAGTGAACAAATATCCAAAGGAACTTTGTGACGAGGGAGTTATCAATGTTGTCTCTTAGGACACTCGTTACCACTTCTTGTTTACTGTTTTAATCAACAGTCAACCTAATCTCACATTTAGTTACTATTGATTACATTGTTTGCATTGCCTCTGAGAATCTAAATTGGATATAGTCTTTGAGGAATTCGACACTTGAAATACTCCTAGGTTTATTACTTTATTGACTCGTGTGGCTTAACTGTCATGCTATCATTTTTCATCTTTATCATGAGCATAACCTCTCTGTCCACAATACTAACTTCCACCCCTAGTGATTTGTTGTGTGGTTAGGTTTGATGGTTTAGGGTTCGTCTGAGGTTCTTCCCTTTTTAAGTCGTGTTGTCTGAGGTCGTGTTTGGTTTCTTGATATTATTATTTTTGTCTTGTAGATGGCACAGAAGAAGAAATGAATTGTTTCTTAATGTGTAGTTTAATTGTTTCTCAATTACATATTTAAATAGAACATTACATTTAAATTCATATCTTCTATAAAGAATTAACTCTAACTCATATACAACTTTTGTTCATGGCAGGGTAGGTCGAAATGA

mRNA sequence

ATGACCTCCGTGTTTGGATCAACGGTTTTCTTCACTGCCTCGAGAATGGTGGTTCCGGTTGTTAGATTTTTGTCCGCTGAGTCCTTGCCAGGTGATTGTCCGGCCGCCGCAGATTGTTGGCGTGAGTTCCGGCTACTAAGATCTATGGTGCTTTCTTTGACAGAGGAAGAACTGTTTCATCAGCATTTTCGCAATTCTTCAATAGAACAAGTGATTTCCTCACTGCTTCTCTTGCCAAATCTACCAACTAACCTGGCTTCCAAGCTCATTTACAAATCTGTCACCCGCCAATGGATTCTCAAACAGGCCCATCATAAACTTGACTCTCAAAATCCTTCTCACGGCGTCGTCGTTGATTCAGGACATCAGAATAACGTTCTTAACGATAAGGGTAGGTCGAAATGA

Coding sequence (CDS)

ATGACCTCCGTGTTTGGATCAACGGTTTTCTTCACTGCCTCGAGAATGGTGGTTCCGGTTGTTAGATTTTTGTCCGCTGAGTCCTTGCCAGGTGATTGTCCGGCCGCCGCAGATTGTTGGCGTGAGTTCCGGCTACTAAGATCTATGGTGCTTTCTTTGACAGAGGAAGAACTGTTTCATCAGCATTTTCGCAATTCTTCAATAGAACAAGTGATTTCCTCACTGCTTCTCTTGCCAAATCTACCAACTAACCTGGCTTCCAAGCTCATTTACAAATCTGTCACCCGCCAATGGATTCTCAAACAGGCCCATCATAAACTTGACTCTCAAAATCCTTCTCACGGCGTCGTCGTTGATTCAGGACATCAGAATAACGTTCTTAACGATAAGGGTAGGTCGAAATGA

Protein sequence

MTSVFGSTVFFTASRMVVPVVRFLSAESLPGDCPAAADCWREFRLLRSMVLSLTEEELFHQHFRNSSIEQVISSLLLLPNLPTNLASKLIYKSVTRQWILKQAHHKLDSQNPSHGVVVDSGHQNNVLNDKGRSK*
Homology
[Close]
BLAST of Csa2G251480 vs. TrEMBL
Match: A0A0A0LM31_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G251480 PE=4 SV=1)

HSP 1 Score: 269.6 bits (688), Expect = 2.0e-69
Identity = 134/134 (100.00%), Postives = 134/134 (100.00%), Query Frame = 1 

Query: 1   MTSVFGSTVFFTASRMVVPVVRFLSAESLPGDCPAAADCWREFRLLRSMVLSLTEEELFH 60
           MTSVFGSTVFFTASRMVVPVVRFLSAESLPGDCPAAADCWREFRLLRSMVLSLTEEELFH
Sbjct: 1   MTSVFGSTVFFTASRMVVPVVRFLSAESLPGDCPAAADCWREFRLLRSMVLSLTEEELFH 60

Query: 61  QHFRNSSIEQVISSLLLLPNLPTNLASKLIYKSVTRQWILKQAHHKLDSQNPSHGVVVDS 120
           QHFRNSSIEQVISSLLLLPNLPTNLASKLIYKSVTRQWILKQAHHKLDSQNPSHGVVVDS
Sbjct: 61  QHFRNSSIEQVISSLLLLPNLPTNLASKLIYKSVTRQWILKQAHHKLDSQNPSHGVVVDS 120

Query: 121 GHQNNVLNDKGRSK 135
           GHQNNVLNDKGRSK
Sbjct: 121 GHQNNVLNDKGRSK 134

[Close]
BLAST of Csa2G251480 vs. NCBI nr
Match: gi|700206728|gb|KGN61847.1| (hypothetical protein Csa_2G251480 [Cucumis sativus])

HSP 1 Score: 269.6 bits (688), Expect = 2.9e-69
Identity = 134/134 (100.00%), Postives = 134/134 (100.00%), Query Frame = 1 

Query: 1   MTSVFGSTVFFTASRMVVPVVRFLSAESLPGDCPAAADCWREFRLLRSMVLSLTEEELFH 60
           MTSVFGSTVFFTASRMVVPVVRFLSAESLPGDCPAAADCWREFRLLRSMVLSLTEEELFH
Sbjct: 1   MTSVFGSTVFFTASRMVVPVVRFLSAESLPGDCPAAADCWREFRLLRSMVLSLTEEELFH 60

Query: 61  QHFRNSSIEQVISSLLLLPNLPTNLASKLIYKSVTRQWILKQAHHKLDSQNPSHGVVVDS 120
           QHFRNSSIEQVISSLLLLPNLPTNLASKLIYKSVTRQWILKQAHHKLDSQNPSHGVVVDS
Sbjct: 61  QHFRNSSIEQVISSLLLLPNLPTNLASKLIYKSVTRQWILKQAHHKLDSQNPSHGVVVDS 120

Query: 121 GHQNNVLNDKGRSK 135
           GHQNNVLNDKGRSK
Sbjct: 121 GHQNNVLNDKGRSK 134

The following BLAST results are available for this feature:
BLAST of Csa2G251480 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LM31_CUCSA2.0e-69100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_2G251480 PE=4 SV=1[more]
BLAST of Csa2G251480 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700206728|gb|KGN61847.1|2.9e-69100.00hypothetical protein Csa_2G251480 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU150561cucumber EST collection version 3.0transcribed_cluster
CU168630cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa2G251480.1Csa2G251480.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU168630CU168630transcribed_cluster
CU150561CU150561transcribed_cluster


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa2G251480MELO3C034621.2Melon (DHL92) v3.6.1cumedB081
Csa2G251480CsGy2G012740Cucumber (Gy14) v2cgybcuB056
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa2G251480Wax gourdcuwgoB154
Csa2G251480Wax gourdcuwgoB182
Csa2G251480Cucumber (Chinese Long) v2cucuB077
Csa2G251480Cucumber (Gy14) v1cgycuB133
Csa2G251480Cucumber (Gy14) v1cgycuB527
Csa2G251480Cucurbita maxima (Rimu)cmacuB438
Csa2G251480Cucurbita maxima (Rimu)cmacuB542
Csa2G251480Cucurbita maxima (Rimu)cmacuB588
Csa2G251480Cucurbita moschata (Rifu)cmocuB426
Csa2G251480Cucurbita moschata (Rifu)cmocuB495
Csa2G251480Cucurbita moschata (Rifu)cmocuB531
Csa2G251480Cucurbita moschata (Rifu)cmocuB577
Csa2G251480Melon (DHL92) v3.5.1cumeB092
Csa2G251480Melon (DHL92) v3.5.1cumeB102
Csa2G251480Watermelon (Charleston Gray)cuwcgB104
Csa2G251480Watermelon (Charleston Gray)cuwcgB127
Csa2G251480Watermelon (97103) v1cuwmB149
Csa2G251480Watermelon (97103) v1cuwmB155
Csa2G251480Cucurbita pepo (Zucchini)cpecuB232
Csa2G251480Cucurbita pepo (Zucchini)cpecuB267
Csa2G251480Cucurbita pepo (Zucchini)cpecuB540
Csa2G251480Cucurbita pepo (Zucchini)cpecuB704
Csa2G251480Bottle gourd (USVL1VR-Ls)culsiB093
Csa2G251480Bottle gourd (USVL1VR-Ls)culsiB103
Csa2G251480Cucumber (Gy14) v2cgybcuB295
Csa2G251480Melon (DHL92) v3.6.1cumedB096
Csa2G251480Silver-seed gourdcarcuB0341
Csa2G251480Silver-seed gourdcarcuB0463
Csa2G251480Watermelon (97103) v2cuwmbB110
Csa2G251480Watermelon (97103) v2cuwmbB123