Csa2G250420 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa2G250420
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionCoatomer alpha subunit, putative; contains IPR010714 (Coatomer, alpha subunit, C-terminal)
LocationChr2 : 12292432 .. 12293307 (+)
Genome Viewer
Gene Expression
   



Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACGGATGCCTCCCAACTGAACTATGACTTCAGAAACCCTTTTGTGACCTGTGGTGCAACTTATGTACCAATTTACCGAGGTCAGAAGGATGTTTCTTGCCCTTACTGTAGTTCCAGGTTTGTGCTAAGTCAGGAAGGACAACTGTGCTCTGTTTGTGATCTTGCTGTTATTGGAGCAGATGCGTCTGGTTTACTTTGTTCTCCCACACAGAATCGATGATCAAACTCTGGGAATTATATCTTCTCTCAATGACCTCACTTATCATGTTGAGAACAGGAGCTTTGTTGAGTATTCACGTCTCCTTGTGGAGGTAAATGGAAGTGATGGAGTAAAACAGCTAGCGAAGCTACCTTGGAAACACTTTTGGTTGTCTACTACTTAAGTATTCTTGTTTTTTTTGTTTAGTCGATTGTGATATCACTGTAATAAAGTTCAGAATTTTGGAATAGGCTATTCATGTTAGGTATGATGAGATCAAATACAGGAGGGTTTTATATGAATTGATTGTTTACAGGGATGATATGACATCTTTCAAGTTAATGCTTGCAGGATCCTTTCTCCAATCTTCGTTGTCTGTAGTGCGGTCAGAGCTTTCTTGCTAAAAGATGAACATGTCTGTGAGCTTCCTTTTGCTTATCTGTTCTCGTGCACCTCCCTCTTTCCAGAATTGACTCTTAGTCTTGCATTTGAACATGAGTTGGGTTCTTTGACTATAATCTTTGGTTGTAGAGAAGTGTGCGTAGGAGTAGGTTCAACAGAACTGTGTCCTTCGTTCTAAAAAGGAGTGTTTGTTATGAAGATAGTGGGTCTAGTCTCGTGGCTCATATTGTTGATGCTAAGGCATGGTTGTCCAACATGAGATTTGAGGTGTAG

mRNA sequence

ATGACGGATGCCTCCCAACTGAACTATGACTTCAGAAACCCTTTTGTGACCTGTGGTGCAACTTATGTACCAATTTACCGAGGTCAGAAGGATGTTTCTTGCCCTTACTGTAGTTCCAGAATCGATGATCAAACTCTGGGAATTATATCTTCTCTCAATGACCTCACTTATCATGTTGAGAACAGGAGCTTTGTTGAGTATTCACGTCTCCTTGTGGAGGCTATTCATGTTAGGTATGATGAGATCAAATACAGGAGGGTTTTATATGAATTGATTGTTTACAGGGATGATATGACATCTTTCAAGTTAATGCTTGCAGGATCCTTTCTCCAATCTTCGTTGTCTAGAAGTGTGCGTAGGAGTAGGTTCAACAGAACTGTGTCCTTCGTTCTAAAAAGGAGTGTTTGTTATGAAGATAGTGGGTCTAGTCTCGTGGCTCATATTGTTGATGCTAAGGCATGGTTGTCCAACATGAGATTTGAGGTGTAG

Coding sequence (CDS)

ATGACGGATGCCTCCCAACTGAACTATGACTTCAGAAACCCTTTTGTGACCTGTGGTGCAACTTATGTACCAATTTACCGAGGTCAGAAGGATGTTTCTTGCCCTTACTGTAGTTCCAGAATCGATGATCAAACTCTGGGAATTATATCTTCTCTCAATGACCTCACTTATCATGTTGAGAACAGGAGCTTTGTTGAGTATTCACGTCTCCTTGTGGAGGCTATTCATGTTAGGTATGATGAGATCAAATACAGGAGGGTTTTATATGAATTGATTGTTTACAGGGATGATATGACATCTTTCAAGTTAATGCTTGCAGGATCCTTTCTCCAATCTTCGTTGTCTAGAAGTGTGCGTAGGAGTAGGTTCAACAGAACTGTGTCCTTCGTTCTAAAAAGGAGTGTTTGTTATGAAGATAGTGGGTCTAGTCTCGTGGCTCATATTGTTGATGCTAAGGCATGGTTGTCCAACATGAGATTTGAGGTGTAG

Protein sequence

MTDASQLNYDFRNPFVTCGATYVPIYRGQKDVSCPYCSSRIDDQTLGIISSLNDLTYHVENRSFVEYSRLLVEAIHVRYDEIKYRRVLYELIVYRDDMTSFKLMLAGSFLQSSLSRSVRRSRFNRTVSFVLKRSVCYEDSGSSLVAHIVDAKAWLSNMRFEV*
Homology
[Close]
BLAST of Csa2G250420 vs. Swiss-Prot
Match: COPA1_ARATH (Coatomer subunit alpha-1 OS=Arabidopsis thaliana GN=At1g62020 PE=2 SV=2)

HSP 1 Score: 83.6 bits (205), Expect = 2.2e-15
Identity = 37/55 (67.27%), Postives = 42/55 (76.36%), Query Frame = 1 

Query: 1    MTDASQLNYDFRNPFVTCGATYVPIYRGQKDVSCPYCSSRIDDQTLGIISSLNDL 56
            MTD ++LNYDFRNPFV CG+TYVPIYRGQKDVSCPYC++R      G I ++ DL
Sbjct: 1144 MTDETKLNYDFRNPFVVCGSTYVPIYRGQKDVSCPYCTARFVPNQEGNICTVCDL 1198

[Close]
BLAST of Csa2G250420 vs. Swiss-Prot
Match: COPA2_ARATH (Coatomer subunit alpha-2 OS=Arabidopsis thaliana GN=At2g21390 PE=2 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 2.9e-15
Identity = 37/55 (67.27%), Postives = 42/55 (76.36%), Query Frame = 1 

Query: 1    MTDASQLNYDFRNPFVTCGATYVPIYRGQKDVSCPYCSSRIDDQTLGIISSLNDL 56
            MTDA+ LNYDFRNPFV CG+TYVPIY+GQKDV+CPYC++R      G I S+ DL
Sbjct: 1146 MTDATTLNYDFRNPFVICGSTYVPIYKGQKDVACPYCTARFVPSQEGNICSVCDL 1200

[Close]
BLAST of Csa2G250420 vs. Swiss-Prot
Match: COPA1_ORYSJ (Coatomer subunit alpha-1 OS=Oryza sativa subsp. japonica GN=Os03g0711400 PE=2 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 1.4e-14
Identity = 35/53 (66.04%), Postives = 40/53 (75.47%), Query Frame = 1 

Query: 3    DASQLNYDFRNPFVTCGATYVPIYRGQKDVSCPYCSSRIDDQTLGIISSLNDL 56
            D+S+LNYD+RNPFV CGATYVPIYRGQKDVSCPYC SR      G + ++ +L
Sbjct: 1148 DSSELNYDYRNPFVVCGATYVPIYRGQKDVSCPYCGSRFVPSIEGQLCTICEL 1200

[Close]
BLAST of Csa2G250420 vs. Swiss-Prot
Match: COPA2_ORYSJ (Coatomer subunit alpha-2 OS=Oryza sativa subsp. japonica GN=Os03g0711500 PE=2 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 1.4e-14
Identity = 35/53 (66.04%), Postives = 40/53 (75.47%), Query Frame = 1 

Query: 3    DASQLNYDFRNPFVTCGATYVPIYRGQKDVSCPYCSSRIDDQTLGIISSLNDL 56
            D+S+LNYD+RNPFV CGATYVPIYRGQKDVSCPYC SR      G + ++ +L
Sbjct: 1148 DSSELNYDYRNPFVVCGATYVPIYRGQKDVSCPYCGSRFVPSIEGQLCTICEL 1200

[Close]
BLAST of Csa2G250420 vs. Swiss-Prot
Match: COPA3_ORYSJ (Coatomer subunit alpha-3 OS=Oryza sativa subsp. japonica GN=Os09g0127800 PE=2 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 5.5e-14
Identity = 34/53 (64.15%), Postives = 39/53 (73.58%), Query Frame = 1 

Query: 3    DASQLNYDFRNPFVTCGATYVPIYRGQKDVSCPYCSSRIDDQTLGIISSLNDL 56
            D+ +LNYD+RNPFV CGATYVPIYRGQKDVSCPYC SR      G + ++ +L
Sbjct: 1148 DSCELNYDYRNPFVVCGATYVPIYRGQKDVSCPYCGSRFVPSIEGQLCTICEL 1200

[Close]
BLAST of Csa2G250420 vs. TrEMBL
Match: A0A0A0LLA0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G250420 PE=4 SV=1)

HSP 1 Score: 325.1 bits (832), Expect = 4.9e-86
Identity = 162/162 (100.00%), Postives = 162/162 (100.00%), Query Frame = 1 

Query: 1   MTDASQLNYDFRNPFVTCGATYVPIYRGQKDVSCPYCSSRIDDQTLGIISSLNDLTYHVE 60
           MTDASQLNYDFRNPFVTCGATYVPIYRGQKDVSCPYCSSRIDDQTLGIISSLNDLTYHVE
Sbjct: 1   MTDASQLNYDFRNPFVTCGATYVPIYRGQKDVSCPYCSSRIDDQTLGIISSLNDLTYHVE 60

Query: 61  NRSFVEYSRLLVEAIHVRYDEIKYRRVLYELIVYRDDMTSFKLMLAGSFLQSSLSRSVRR 120
           NRSFVEYSRLLVEAIHVRYDEIKYRRVLYELIVYRDDMTSFKLMLAGSFLQSSLSRSVRR
Sbjct: 61  NRSFVEYSRLLVEAIHVRYDEIKYRRVLYELIVYRDDMTSFKLMLAGSFLQSSLSRSVRR 120

Query: 121 SRFNRTVSFVLKRSVCYEDSGSSLVAHIVDAKAWLSNMRFEV 163
           SRFNRTVSFVLKRSVCYEDSGSSLVAHIVDAKAWLSNMRFEV
Sbjct: 121 SRFNRTVSFVLKRSVCYEDSGSSLVAHIVDAKAWLSNMRFEV 162

[Close]
BLAST of Csa2G250420 vs. TrEMBL
Match: M5WQM6_PRUPE (Coatomer subunit alpha OS=Prunus persica GN=PRUPE_ppa000386mg PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 1.4e-16
Identity = 43/55 (78.18%), Postives = 47/55 (85.45%), Query Frame = 1 

Query: 1    MTDASQLNYDFRNPFVTCGATYVPIYRGQKDVSCPYCSSRIDDQTLGIISSLNDL 56
            MTDASQLNYDFRNPFVTCGATYVPIYRGQKDVSCPYCSSR      G++ ++ DL
Sbjct: 1146 MTDASQLNYDFRNPFVTCGATYVPIYRGQKDVSCPYCSSRFVPTQEGLLCTVCDL 1200

[Close]
BLAST of Csa2G250420 vs. TrEMBL
Match: A0A0A0LM21_CUCSA (Coatomer subunit alpha OS=Cucumis sativus GN=Csa_2G249910 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 1.8e-16
Identity = 44/55 (80.00%), Postives = 46/55 (83.64%), Query Frame = 1 

Query: 1    MTDASQLNYDFRNPFVTCGATYVPIYRGQKDVSCPYCSSRIDDQTLGIISSLNDL 56
            MTDASQLNYDFRNPFVTCGATYVPIYRGQKDVSCPYCSSR      G + S+ DL
Sbjct: 1147 MTDASQLNYDFRNPFVTCGATYVPIYRGQKDVSCPYCSSRFVPSQEGQLCSVCDL 1201

[Close]
BLAST of Csa2G250420 vs. TrEMBL
Match: B9SU35_RICCO (Coatomer subunit alpha OS=Ricinus communis GN=RCOM_1215590 PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 4.1e-16
Identity = 43/55 (78.18%), Postives = 46/55 (83.64%), Query Frame = 1 

Query: 1    MTDASQLNYDFRNPFVTCGATYVPIYRGQKDVSCPYCSSRIDDQTLGIISSLNDL 56
            MTDAS+LNYDFRNPFVTCGATYVPIYRGQKDVSCPYCSSR      G + S+ DL
Sbjct: 1145 MTDASELNYDFRNPFVTCGATYVPIYRGQKDVSCPYCSSRFVPSQEGQLCSVCDL 1199

[Close]
BLAST of Csa2G250420 vs. TrEMBL
Match: A0A067L3H5_JATCU (Coatomer subunit alpha OS=Jatropha curcas GN=JCGZ_26756 PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 9.1e-16
Identity = 42/55 (76.36%), Postives = 46/55 (83.64%), Query Frame = 1 

Query: 1    MTDASQLNYDFRNPFVTCGATYVPIYRGQKDVSCPYCSSRIDDQTLGIISSLNDL 56
            MTDAS+LNYDFRNPFVTCGATYVPIYRGQKDVSCPYCSSR      G + ++ DL
Sbjct: 1146 MTDASELNYDFRNPFVTCGATYVPIYRGQKDVSCPYCSSRFVPSQEGQLCTVCDL 1200

[Close]
BLAST of Csa2G250420 vs. TAIR10
Match: AT1G62020.1 (AT1G62020.1 Coatomer, alpha subunit)

HSP 1 Score: 83.6 bits (205), Expect = 1.3e-16
Identity = 37/55 (67.27%), Postives = 42/55 (76.36%), Query Frame = 1 

Query: 1    MTDASQLNYDFRNPFVTCGATYVPIYRGQKDVSCPYCSSRIDDQTLGIISSLNDL 56
            MTD ++LNYDFRNPFV CG+TYVPIYRGQKDVSCPYC++R      G I ++ DL
Sbjct: 1144 MTDETKLNYDFRNPFVVCGSTYVPIYRGQKDVSCPYCTARFVPNQEGNICTVCDL 1198

[Close]
BLAST of Csa2G250420 vs. TAIR10
Match: AT2G21390.1 (AT2G21390.1 Coatomer, alpha subunit)

HSP 1 Score: 83.2 bits (204), Expect = 1.6e-16
Identity = 37/55 (67.27%), Postives = 42/55 (76.36%), Query Frame = 1 

Query: 1    MTDASQLNYDFRNPFVTCGATYVPIYRGQKDVSCPYCSSRIDDQTLGIISSLNDL 56
            MTDA+ LNYDFRNPFV CG+TYVPIY+GQKDV+CPYC++R      G I S+ DL
Sbjct: 1146 MTDATTLNYDFRNPFVICGSTYVPIYKGQKDVACPYCTARFVPSQEGNICSVCDL 1200

[Close]
BLAST of Csa2G250420 vs. NCBI nr
Match: gi|700206720|gb|KGN61839.1| (hypothetical protein Csa_2G250420 [Cucumis sativus])

HSP 1 Score: 325.1 bits (832), Expect = 7.0e-86
Identity = 162/162 (100.00%), Postives = 162/162 (100.00%), Query Frame = 1 

Query: 1   MTDASQLNYDFRNPFVTCGATYVPIYRGQKDVSCPYCSSRIDDQTLGIISSLNDLTYHVE 60
           MTDASQLNYDFRNPFVTCGATYVPIYRGQKDVSCPYCSSRIDDQTLGIISSLNDLTYHVE
Sbjct: 1   MTDASQLNYDFRNPFVTCGATYVPIYRGQKDVSCPYCSSRIDDQTLGIISSLNDLTYHVE 60

Query: 61  NRSFVEYSRLLVEAIHVRYDEIKYRRVLYELIVYRDDMTSFKLMLAGSFLQSSLSRSVRR 120
           NRSFVEYSRLLVEAIHVRYDEIKYRRVLYELIVYRDDMTSFKLMLAGSFLQSSLSRSVRR
Sbjct: 61  NRSFVEYSRLLVEAIHVRYDEIKYRRVLYELIVYRDDMTSFKLMLAGSFLQSSLSRSVRR 120

Query: 121 SRFNRTVSFVLKRSVCYEDSGSSLVAHIVDAKAWLSNMRFEV 163
           SRFNRTVSFVLKRSVCYEDSGSSLVAHIVDAKAWLSNMRFEV
Sbjct: 121 SRFNRTVSFVLKRSVCYEDSGSSLVAHIVDAKAWLSNMRFEV 162

[Close]
BLAST of Csa2G250420 vs. NCBI nr
Match: gi|778674172|ref|XP_011650153.1| (PREDICTED: coatomer subunit alpha-1-like [Cucumis sativus])

HSP 1 Score: 234.2 bits (596), Expect = 1.6e-58
Identity = 115/115 (100.00%), Postives = 115/115 (100.00%), Query Frame = 1 

Query: 1   MTDASQLNYDFRNPFVTCGATYVPIYRGQKDVSCPYCSSRIDDQTLGIISSLNDLTYHVE 60
           MTDASQLNYDFRNPFVTCGATYVPIYRGQKDVSCPYCSSRIDDQTLGIISSLNDLTYHVE
Sbjct: 643 MTDASQLNYDFRNPFVTCGATYVPIYRGQKDVSCPYCSSRIDDQTLGIISSLNDLTYHVE 702

Query: 61  NRSFVEYSRLLVEAIHVRYDEIKYRRVLYELIVYRDDMTSFKLMLAGSFLQSSLS 116
           NRSFVEYSRLLVEAIHVRYDEIKYRRVLYELIVYRDDMTSFKLMLAGSFLQSSLS
Sbjct: 703 NRSFVEYSRLLVEAIHVRYDEIKYRRVLYELIVYRDDMTSFKLMLAGSFLQSSLS 757

[Close]
BLAST of Csa2G250420 vs. NCBI nr
Match: gi|595856563|ref|XP_007210424.1| (hypothetical protein PRUPE_ppa000386mg [Prunus persica])

HSP 1 Score: 94.4 bits (233), Expect = 2.0e-16
Identity = 43/55 (78.18%), Postives = 47/55 (85.45%), Query Frame = 1 

Query: 1    MTDASQLNYDFRNPFVTCGATYVPIYRGQKDVSCPYCSSRIDDQTLGIISSLNDL 56
            MTDASQLNYDFRNPFVTCGATYVPIYRGQKDVSCPYCSSR      G++ ++ DL
Sbjct: 1146 MTDASQLNYDFRNPFVTCGATYVPIYRGQKDVSCPYCSSRFVPTQEGLLCTVCDL 1200

[Close]
BLAST of Csa2G250420 vs. NCBI nr
Match: gi|659122158|ref|XP_008460997.1| (PREDICTED: coatomer subunit alpha-1-like [Cucumis melo])

HSP 1 Score: 94.0 bits (232), Expect = 2.6e-16
Identity = 44/55 (80.00%), Postives = 46/55 (83.64%), Query Frame = 1 

Query: 1    MTDASQLNYDFRNPFVTCGATYVPIYRGQKDVSCPYCSSRIDDQTLGIISSLNDL 56
            MTDASQLNYDFRNPFVTCGATYVPIYRGQKDVSCPYCSSR      G + S+ DL
Sbjct: 1147 MTDASQLNYDFRNPFVTCGATYVPIYRGQKDVSCPYCSSRFVPSQEGQLCSVCDL 1201

[Close]
BLAST of Csa2G250420 vs. NCBI nr
Match: gi|778669476|ref|XP_011649252.1| (PREDICTED: coatomer subunit alpha-1-like [Cucumis sativus])

HSP 1 Score: 94.0 bits (232), Expect = 2.6e-16
Identity = 44/55 (80.00%), Postives = 46/55 (83.64%), Query Frame = 1 

Query: 1    MTDASQLNYDFRNPFVTCGATYVPIYRGQKDVSCPYCSSRIDDQTLGIISSLNDL 56
            MTDASQLNYDFRNPFVTCGATYVPIYRGQKDVSCPYCSSR      G + S+ DL
Sbjct: 1147 MTDASQLNYDFRNPFVTCGATYVPIYRGQKDVSCPYCSSRFVPSQEGQLCSVCDL 1201

The following BLAST results are available for this feature:
BLAST of Csa2G250420 vs. Swiss-Prot
Match NameE-valueIdentityDescription
COPA1_ARATH2.2e-1567.27Coatomer subunit alpha-1 OS=Arabidopsis thaliana GN=At1g62020 PE=2 SV=2[more]
COPA2_ARATH2.9e-1567.27Coatomer subunit alpha-2 OS=Arabidopsis thaliana GN=At2g21390 PE=2 SV=1[more]
COPA1_ORYSJ1.4e-1466.04Coatomer subunit alpha-1 OS=Oryza sativa subsp. japonica GN=Os03g0711400 PE=2 SV... [more]
COPA2_ORYSJ1.4e-1466.04Coatomer subunit alpha-2 OS=Oryza sativa subsp. japonica GN=Os03g0711500 PE=2 SV... [more]
COPA3_ORYSJ5.5e-1464.15Coatomer subunit alpha-3 OS=Oryza sativa subsp. japonica GN=Os09g0127800 PE=2 SV... [more]
BLAST of Csa2G250420 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LLA0_CUCSA4.9e-86100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_2G250420 PE=4 SV=1[more]
M5WQM6_PRUPE1.4e-1678.18Coatomer subunit alpha OS=Prunus persica GN=PRUPE_ppa000386mg PE=4 SV=1[more]
A0A0A0LM21_CUCSA1.8e-1680.00Coatomer subunit alpha OS=Cucumis sativus GN=Csa_2G249910 PE=4 SV=1[more]
B9SU35_RICCO4.1e-1678.18Coatomer subunit alpha OS=Ricinus communis GN=RCOM_1215590 PE=4 SV=1[more]
A0A067L3H5_JATCU9.1e-1676.36Coatomer subunit alpha OS=Jatropha curcas GN=JCGZ_26756 PE=4 SV=1[more]
BLAST of Csa2G250420 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G62020.11.3e-1667.27 Coatomer, alpha subunit[more]
AT2G21390.11.6e-1667.27 Coatomer, alpha subunit[more]
BLAST of Csa2G250420 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700206720|gb|KGN61839.1|7.0e-86100.00hypothetical protein Csa_2G250420 [Cucumis sativus][more]
gi|778674172|ref|XP_011650153.1|1.6e-58100.00PREDICTED: coatomer subunit alpha-1-like [Cucumis sativus][more]
gi|595856563|ref|XP_007210424.1|2.0e-1678.18hypothetical protein PRUPE_ppa000386mg [Prunus persica][more]
gi|659122158|ref|XP_008460997.1|2.6e-1680.00PREDICTED: coatomer subunit alpha-1-like [Cucumis melo][more]
gi|778669476|ref|XP_011649252.1|2.6e-1680.00PREDICTED: coatomer subunit alpha-1-like [Cucumis sativus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR010714Coatomer_asu_C
Vocabulary: Molecular Function
TermDefinition
GO:0005198structural molecule activity
GO:0005515protein binding
Vocabulary: Biological Process
TermDefinition
GO:0006886intracellular protein transport
GO:0016192vesicle-mediated transport
Vocabulary: Cellular Component
TermDefinition
GO:0030126COPI vesicle coat
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006886 intracellular protein transport
biological_process GO:0008152 metabolic process
biological_process GO:0016192 vesicle-mediated transport
cellular_component GO:0030126 COPI vesicle coat
molecular_function GO:0005515 protein binding
molecular_function GO:0005198 structural molecule activity
molecular_function GO:0016740 transferase activity
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU085695cucumber EST collection version 3.0transcribed_cluster
CU088172cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa2G250420.1Csa2G250420.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU088172CU088172transcribed_cluster
CU085695CU085695transcribed_cluster


InterPro
Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR010714Coatomer, alpha subunit, C-terminalPFAMPF06957COPI_Ccoord: 1..55
score: 1.1
NoneNo IPR availablePANTHERPTHR19876COATOMERcoord: 1..40
score: 2.5
NoneNo IPR availablePANTHERPTHR19876:SF7SUBFAMILY NOT NAMEDcoord: 1..40
score: 2.5

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa2G250420Bhi10G001566Wax gourdcuwgoB182
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa2G250420Cucumber (Gy14) v2cgybcuB056
Csa2G250420Cucumber (Gy14) v2cgybcuB295
Csa2G250420Melon (DHL92) v3.6.1cumedB081
Csa2G250420Melon (DHL92) v3.6.1cumedB096
Csa2G250420Silver-seed gourdcarcuB0328
Csa2G250420Silver-seed gourdcarcuB0341
Csa2G250420Watermelon (97103) v2cuwmbB110
Csa2G250420Watermelon (97103) v2cuwmbB123
Csa2G250420Cucumber (Chinese Long) v2cucuB077
Csa2G250420Cucumber (Gy14) v1cgycuB133
Csa2G250420Cucumber (Gy14) v1cgycuB527
Csa2G250420Cucurbita maxima (Rimu)cmacuB438
Csa2G250420Cucurbita maxima (Rimu)cmacuB542
Csa2G250420Cucurbita maxima (Rimu)cmacuB588
Csa2G250420Cucurbita moschata (Rifu)cmocuB426
Csa2G250420Cucurbita moschata (Rifu)cmocuB495
Csa2G250420Cucurbita moschata (Rifu)cmocuB531
Csa2G250420Cucurbita moschata (Rifu)cmocuB577
Csa2G250420Melon (DHL92) v3.5.1cumeB092
Csa2G250420Melon (DHL92) v3.5.1cumeB102
Csa2G250420Watermelon (Charleston Gray)cuwcgB104
Csa2G250420Watermelon (Charleston Gray)cuwcgB127
Csa2G250420Watermelon (97103) v1cuwmB149
Csa2G250420Watermelon (97103) v1cuwmB155
Csa2G250420Cucurbita pepo (Zucchini)cpecuB232
Csa2G250420Cucurbita pepo (Zucchini)cpecuB267
Csa2G250420Cucurbita pepo (Zucchini)cpecuB540
Csa2G250420Cucurbita pepo (Zucchini)cpecuB704
Csa2G250420Bottle gourd (USVL1VR-Ls)culsiB093
Csa2G250420Bottle gourd (USVL1VR-Ls)culsiB103