Csa2G248660 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa2G248660
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr2 : 12054538 .. 12054864 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAATCATCTGCCGCCCGCCTTCTCCGTACCGTCTCTCTTCCTTATCTTCCAGCTCTCCTCCCCCCCTCTCTTTCTCTCTCTTACAGCTTCTTTCTCCATTTCTTCTCACACCAAACGCCGTCACCACACATCAGACCACCGCCCAATTCTCCTCCTCCTCCTCCGTCCTTCGGGTTCGATCTCTCTCTTTCCTCGCGCTGGTCGCCGCTTTGTTGTTCCCGTCGCCGGAACAACCAAGGCAGCATCAGATCTTCCATGTCCAGCTCGTGTTGTGGCGTTACAGCCTTCTTCGCGCTATTTTCTTGTTACCTGCAGTTCGTTTGA

mRNA sequence

ATGAAATCATCTGCCGCCCGCCTTCTCCGTACCGTCTCTCTTCCTTATCTTCCAGCTCTCCTCCCCCCCTCTCTTTCTCTCTCTTACAGCTTCTTTCTCCATTTCTTCTCACACCAAACGCCGTCACCACACATCAGACCACCGCCCAATTCTCCTCCTCCTCCTCCGTCCTTCGGGTTCGATCTCTCTCTTTCCTCGCGCTGGTCGCCGCTTTGTTGTTCCCGTCGCCGGAACAACCAAGGCAGCATCAGATCTTCCATGTCCAGCTCGTGTTGTGGCGTTACAGCCTTCTTCGCGCTATTTTCTTGTTACCTGCAGTTCGTTTGA

Coding sequence (CDS)

ATGAAATCATCTGCCGCCCGCCTTCTCCGTACCGTCTCTCTTCCTTATCTTCCAGCTCTCCTCCCCCCCTCTCTTTCTCTCTCTTACAGCTTCTTTCTCCATTTCTTCTCACACCAAACGCCGTCACCACACATCAGACCACCGCCCAATTCTCCTCCTCCTCCTCCGTCCTTCGGGTTCGATCTCTCTCTTTCCTCGCGCTGGTCGCCGCTTTGTTGTTCCCGTCGCCGGAACAACCAAGGCAGCATCAGATCTTCCATGTCCAGCTCGTGTTGTGGCGTTACAGCCTTCTTCGCGCTATTTTCTTGTTACCTGCAGTTCGTTTGA

Protein sequence

MKSSAARLLRTVSLPYLPALLPPSLSLSYSFFLHFFSHQTPSPHIRPPPNSPPPPPSFGFDLSLSSRWSPLCCSRRRNNQGSIRSSMSSSCCGVTAFFALFSCYLQFV*

Homology

[Close]

BLAST of Csa2G248660 vs. TrEMBL
Match: A0A0A0LL70_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G248660 PE=4 SV=1)

HSP 1 Score: 228.4 bits (581), Expect = 4.2e-57
Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 1


Query: 1   MKSSAARLLRTVSLPYLPALLPPSLSLSYSFFLHFFSHQTPSPHIRPPPNSPPPPPSFGF 60
           MKSSAARLLRTVSLPYLPALLPPSLSLSYSFFLHFFSHQTPSPHIRPPPNSPPPPPSFGF
Sbjct: 1   MKSSAARLLRTVSLPYLPALLPPSLSLSYSFFLHFFSHQTPSPHIRPPPNSPPPPPSFGF 60

Query: 61  DLSLSSRWSPLCCSRRRNNQGSIRSSMSSSCCGVTAFFALFSCYLQFV 109
           DLSLSSRWSPLCCSRRRNNQGSIRSSMSSSCCGVTAFFALFSCYLQFV
Sbjct: 61  DLSLSSRWSPLCCSRRRNNQGSIRSSMSSSCCGVTAFFALFSCYLQFV 108

[Close]

BLAST of Csa2G248660 vs. NCBI nr
Match: gi|700206690|gb|KGN61809.1| (hypothetical protein Csa_2G248660 [Cucumis sativus])

HSP 1 Score: 228.4 bits (581), Expect = 6.0e-57
Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 1


Query: 1   MKSSAARLLRTVSLPYLPALLPPSLSLSYSFFLHFFSHQTPSPHIRPPPNSPPPPPSFGF 60
           MKSSAARLLRTVSLPYLPALLPPSLSLSYSFFLHFFSHQTPSPHIRPPPNSPPPPPSFGF
Sbjct: 1   MKSSAARLLRTVSLPYLPALLPPSLSLSYSFFLHFFSHQTPSPHIRPPPNSPPPPPSFGF 60

Query: 61  DLSLSSRWSPLCCSRRRNNQGSIRSSMSSSCCGVTAFFALFSCYLQFV 109
           DLSLSSRWSPLCCSRRRNNQGSIRSSMSSSCCGVTAFFALFSCYLQFV
Sbjct: 61  DLSLSSRWSPLCCSRRRNNQGSIRSSMSSSCCGVTAFFALFSCYLQFV 108

The following BLAST results are available for this feature:

BLAST of Csa2G248660 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LL70_CUCSA	4.2e-57	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G248660 PE=4 SV=1	[more]

BLAST of Csa2G248660 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700206690\|gb\|KGN61809.1\|	6.0e-57	100.00	hypothetical protein Csa_2G248660 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa2G248660.1	Csa2G248660.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa2G248660	Silver-seed gourd	carcuB0341
Csa2G248660	Watermelon (97103) v2	cuwmbB110
Csa2G248660	Watermelon (97103) v2	cuwmbB123
Csa2G248660	Wax gourd	cuwgoB147
Csa2G248660	Wax gourd	cuwgoB182
Csa2G248660	Cucumber (Chinese Long) v2	cucuB077
Csa2G248660	Cucumber (Gy14) v1	cgycuB133
Csa2G248660	Cucumber (Gy14) v1	cgycuB477
Csa2G248660	Cucumber (Gy14) v1	cgycuB527
Csa2G248660	Cucurbita maxima (Rimu)	cmacuB438
Csa2G248660	Cucurbita maxima (Rimu)	cmacuB542
Csa2G248660	Cucurbita maxima (Rimu)	cmacuB588
Csa2G248660	Cucurbita moschata (Rifu)	cmocuB426
Csa2G248660	Cucurbita moschata (Rifu)	cmocuB531
Csa2G248660	Cucurbita moschata (Rifu)	cmocuB577
Csa2G248660	Melon (DHL92) v3.5.1	cumeB092
Csa2G248660	Melon (DHL92) v3.5.1	cumeB102
Csa2G248660	Watermelon (Charleston Gray)	cuwcgB104
Csa2G248660	Watermelon (Charleston Gray)	cuwcgB127
Csa2G248660	Watermelon (Charleston Gray)	cuwcgB146
Csa2G248660	Watermelon (97103) v1	cuwmB149
Csa2G248660	Watermelon (97103) v1	cuwmB155
Csa2G248660	Cucurbita pepo (Zucchini)	cpecuB232
Csa2G248660	Cucurbita pepo (Zucchini)	cpecuB267
Csa2G248660	Cucurbita pepo (Zucchini)	cpecuB540
Csa2G248660	Cucurbita pepo (Zucchini)	cpecuB704
Csa2G248660	Bottle gourd (USVL1VR-Ls)	culsiB093
Csa2G248660	Cucumber (Gy14) v2	cgybcuB056
Csa2G248660	Cucumber (Gy14) v2	cgybcuB295
Csa2G248660	Melon (DHL92) v3.6.1	cumedB081
Csa2G248660	Melon (DHL92) v3.6.1	cumedB096
Csa2G248660	Silver-seed gourd	carcuB0501