Csa2G223680 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa2G223680
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr2 : 10830922 .. 10832674 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTGATAATTTTGACCAAGATTAGAAAGGTGAAGGGTATTATATTATGTATAATTTGGGTTTTTTTTTTTTTTAAAGTTTTAAGATATTTGATATTTAAAAGAGATGTAAGAACCCAAACCGCCCGGCTCAAAATTCAAACCGAACCGATTTAATTAGCCTAAAACCTCACACCAAACGGGCCCAAGGTTCCATTCGCACTCGGACTACTCTCTCAGTCGTCGTGCCGTCAGTCTCTCCTAGCCACCGTTCGCGCCGCCGCCGTTCCCTCTCTCACTCTCAATCGCCGGTTGCCGCTCACTGTCGTACCTGGGTTTCTCTGGATCTCAATTAACCCACTTGTCTTAGGTTCGTCTTCATCTTTCTCTAAGCTATTGAATGGTTTTTGTTATTATTTTTTCTTTTTATGATTGTGGATTCTGTGTTTTTATTGGGTTCGTGGATTCTTGGTTTAAAATGGGGAAGCTAAGAGTAAATTAGAATGAAATTGGAGGAGAAAAACAGAATCCATTGAAGAAGATCAATGAGCAGCAACAACCGAACAGAGGAAAAAGAGAAGAAGCATTTAGCACTTTAGAGGGTGACTGTGGTTTCCATTTCTTTGCATATAAAGATAAGCAAATGCTCATTTTCCCTGAGAAGTGAATAACTGTGTTTGATTTTGGATGGATTTAATGAGAAGTGGGCAAACTTTTCGGTTCTATTGGTTGATTTGCTTTGGTAATTGTTTTTATTGAACTCATAATAAATGTTTTGTATCGAGCTAATATGATTTGGATCTCTTCGTCCTTGACGAATGAGATAATGGACATGTATATAATGGGATTTATAAAATTACTATGCAACGCTCATTAAGTCCGCATAAAATGTTTGTTTAAATGCTTCTGAAGATTTTGGGTCTGTTTACTAGAAAAGTAGAATTCTCTTTCATTTCATGACTTACGTCCTGGTTTAATTCCTAACGCAATGTTATGCTCTGATGACACGAAACGAAATAACCTTTGAATACTTGTGGATGGTCGAATTTCATGGCTATACTGAAATTTAAATTGCTATTCTATCATTTTGATTGGTTTCTCTTTTGGTACTTAATATGTATTCTCTCAGTTCGAAAACTCTTGATTGGAATTACTTTTTCACCAGTTCAACTTAAAGTTTATGCACGGATAGAATTGCAACATCTTTTCTGCTTTGCTGGTGATTTGACCAATGAAACGTTAGGTGGAAGTTCCTGCACATAGAAAAACATAAAAACACATGAGACCCAAACACCACCATGACTTGGGATATCGGTCTCCCTGTATAATACTATTATATATCAACGAGGTTCTCAAGAGTTCGCGATCAATAAAGCAAACATCACAAGAACAGAGCAATAAATAAATAAAGAAGATAGCAAGGAAACAAAGAAACTGAATTTCTATTCGAGCCAGCTGCCTCTTTCCAAGTGAGCTCTCACTCCCCAAAAACTCACCCTTCCTCCAAACTGAAGCCAAAACCCTACAAAACCCCCTTCAGCTAGTCCCTACATGTACAACATTCTTCAGCTGGACCCCTCCGCACTTTCTGCTCGTGTTATTCCTTTCATACACTTTCAAAGTAGTTGAAGAATTCCAATTCACTGATCGAATAATATAAGTCTCTGGGATCTGTTTGGAATTCTGTACTCTGTATATATCATTGATGTTCTATGTTGTGGCAAAAGTGTATGAACTCATAAACTGAATGATGAACTGCAGTTTGCTGGAGTAG

mRNA sequence

ATGTTGATAATTTTGACCAAGATTAGAAAGGTTCCATTCGCACTCGGACTACTCTCTCAGTCGTCGTGCCGTCAGTCTCTCCTAGCCACCGTTCGCGCCGCCGCCGTTCCCTCTCTCACTCTCAATCGCCGGTTGCCGCTCACTGTCGTACCTGGGTTTCTCTGGATCTCAATTAACCCACTTGTCTTAGTTCAACTTAAAGTTTATGCACGGATAGAATTGCAACATCTTTTCTGCTTTGCTGGTGATTTGACCAATGAAACTTTGCTGGAGTAG

Coding sequence (CDS)

ATGTTGATAATTTTGACCAAGATTAGAAAGGTTCCATTCGCACTCGGACTACTCTCTCAGTCGTCGTGCCGTCAGTCTCTCCTAGCCACCGTTCGCGCCGCCGCCGTTCCCTCTCTCACTCTCAATCGCCGGTTGCCGCTCACTGTCGTACCTGGGTTTCTCTGGATCTCAATTAACCCACTTGTCTTAGTTCAACTTAAAGTTTATGCACGGATAGAATTGCAACATCTTTTCTGCTTTGCTGGTGATTTGACCAATGAAACTTTGCTGGAGTAG

Protein sequence

MLIILTKIRKVPFALGLLSQSSCRQSLLATVRAAAVPSLTLNRRLPLTVVPGFLWISINPLVLVQLKVYARIELQHLFCFAGDLTNETLLE*
Homology
[Close]
BLAST of Csa2G223680 vs. TrEMBL
Match: A0A0A0LLP3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G223680 PE=4 SV=1)

HSP 1 Score: 177.2 bits (448), Expect = 9.3e-42
Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 1 

Query: 1  MLIILTKIRKVPFALGLLSQSSCRQSLLATVRAAAVPSLTLNRRLPLTVVPGFLWISINP 60
          MLIILTKIRKVPFALGLLSQSSCRQSLLATVRAAAVPSLTLNRRLPLTVVPGFLWISINP
Sbjct: 1  MLIILTKIRKVPFALGLLSQSSCRQSLLATVRAAAVPSLTLNRRLPLTVVPGFLWISINP 60

Query: 61 LVLVQLKVYARIELQHLFCFAGDLTNETLLE 92
          LVLVQLKVYARIELQHLFCFAGDLTNETLLE
Sbjct: 61 LVLVQLKVYARIELQHLFCFAGDLTNETLLE 91

[Close]
BLAST of Csa2G223680 vs. NCBI nr
Match: gi|700206558|gb|KGN61677.1| (hypothetical protein Csa_2G223680 [Cucumis sativus])

HSP 1 Score: 177.2 bits (448), Expect = 1.3e-41
Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 1 

Query: 1  MLIILTKIRKVPFALGLLSQSSCRQSLLATVRAAAVPSLTLNRRLPLTVVPGFLWISINP 60
          MLIILTKIRKVPFALGLLSQSSCRQSLLATVRAAAVPSLTLNRRLPLTVVPGFLWISINP
Sbjct: 1  MLIILTKIRKVPFALGLLSQSSCRQSLLATVRAAAVPSLTLNRRLPLTVVPGFLWISINP 60

Query: 61 LVLVQLKVYARIELQHLFCFAGDLTNETLLE 92
          LVLVQLKVYARIELQHLFCFAGDLTNETLLE
Sbjct: 61 LVLVQLKVYARIELQHLFCFAGDLTNETLLE 91

The following BLAST results are available for this feature:
BLAST of Csa2G223680 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LLP3_CUCSA9.3e-42100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_2G223680 PE=4 SV=1[more]
BLAST of Csa2G223680 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700206558|gb|KGN61677.1|1.3e-41100.00hypothetical protein Csa_2G223680 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0006412 translation
cellular_component GO:0005575 cellular_component
cellular_component GO:0005622 intracellular
cellular_component GO:0005840 ribosome
molecular_function GO:0003674 molecular_function
molecular_function GO:0003735 structural constituent of ribosome
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU106087cucumber EST collection version 3.0transcribed_cluster
CU136059cucumber EST collection version 3.0transcribed_cluster
CU158605cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa2G223680.1Csa2G223680.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU136059CU136059transcribed_cluster
CU106087CU106087transcribed_cluster
CU158605CU158605transcribed_cluster