Csa2G191310 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa2G191310
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein; contains IPR008801 (Rapid ALkalinization Factor)
LocationChr2 : 10314176 .. 10314382 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGTCGTGGTTGATATGTTTGGCCTTAATAGGCATGTTGGTCGTGGGCCAAGAGGTAGCAGCAGAGACAAAACACCTTAAATTTATCGATCCTTGCAATCAACCTTCTCCACCTCCAACTTGTCCTAATAGGGACAAAGTGGAGGAGGCAAACCCCTACAATAGAGATTGCTCTGCAATCAATCGATGTCGTGGAGGAGGATAA

mRNA sequence

ATGAAGTCGTGGTTGATATGTTTGGCCTTAATAGGCATGTTGGTCGTGGGCCAAGAGGTAGCAGCAGAGACAAAACACCTTAAATTTATCGATCCTTGCAATCAACCTTCTCCACCTCCAACTTGTCCTAATAGGGACAAAGTGGAGGAGGCAAACCCCTACAATAGAGATTGCTCTGCAATCAATCGATGTCGTGGAGGAGGATAA

Coding sequence (CDS)

ATGAAGTCGTGGTTGATATGTTTGGCCTTAATAGGCATGTTGGTCGTGGGCCAAGAGGTAGCAGCAGAGACAAAACACCTTAAATTTATCGATCCTTGCAATCAACCTTCTCCACCTCCAACTTGTCCTAATAGGGACAAAGTGGAGGAGGCAAACCCCTACAATAGAGATTGCTCTGCAATCAATCGATGTCGTGGAGGAGGATAA

Protein sequence

MKSWLICLALIGMLVVGQEVAAETKHLKFIDPCNQPSPPPTCPNRDKVEEANPYNRDCSAINRCRGGG*
Homology
[Close]
BLAST of Csa2G191310 vs. TrEMBL
Match: A0A0A0LI94_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G191310 PE=4 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 9.1e-34
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 1 

Query: 1  MKSWLICLALIGMLVVGQEVAAETKHLKFIDPCNQPSPPPTCPNRDKVEEANPYNRDCSA 60
          MKSWLICLALIGMLVVGQEVAAETKHLKFIDPCNQPSPPPTCPNRDKVEEANPYNRDCSA
Sbjct: 1  MKSWLICLALIGMLVVGQEVAAETKHLKFIDPCNQPSPPPTCPNRDKVEEANPYNRDCSA 60

Query: 61 INRCRGGG 69
          INRCRGGG
Sbjct: 61 INRCRGGG 68

[Close]
BLAST of Csa2G191310 vs. TrEMBL
Match: A0A0A0M0X3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G690160 PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 6.6e-16
Identity = 41/67 (61.19%), Postives = 51/67 (76.12%), Query Frame = 1 

Query: 1  MKSWLICLALIGMLVVGQEVAAETKHLKFIDPCNQPSPPPTCPNRDKVE-EANPYNRDCS 60
          MKSWLIC+  I MLV+ QEV A+T HLKF +PC+ PSPPP+C ++ K     NPY+R CS
Sbjct: 1  MKSWLICVVFISMLVMSQEVGAQTNHLKFPNPCDLPSPPPSCSSKVKDHAPTNPYDRGCS 60

Query: 61 AINRCRG 67
          AI+RCRG
Sbjct: 61 AIHRCRG 67

[Close]
BLAST of Csa2G191310 vs. TrEMBL
Match: A0A0A0LZK3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G610770 PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 8.1e-14
Identity = 39/67 (58.21%), Postives = 46/67 (68.66%), Query Frame = 1 

Query: 1   MKSWLICLALIGMLVVGQEVAAETKHLKFIDPCNQPSPPPTCPNRDKVEEANPYNRDCSA 60
           MKSWLIC AL+ MLV+  EVAAE K L F D C QPSPP +C   ++ +   PY+R CS 
Sbjct: 34  MKSWLICFALLSMLVMSHEVAAEGKFLNFSDLCLQPSPPKSCYKDERADSPIPYDRGCSP 93

Query: 61  INRCRGG 68
           I RCRGG
Sbjct: 94  ILRCRGG 100

[Close]
BLAST of Csa2G191310 vs. TrEMBL
Match: A0A059C4L8_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_E01763 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 2.5e-07
Identity = 27/69 (39.13%), Postives = 40/69 (57.97%), Query Frame = 1 

Query: 1  MKSWLICLALIGMLVVGQEVAAETKHLKFIDPCNQPSPPPTCPNRDKV--EEANPYNRDC 60
          M+ W++CLA+IGM+V+     A       +DPC  P+PPP C    +     AN ++R C
Sbjct: 1  MRPWILCLAIIGMVVIHHGAVATPISAGVLDPCKGPNPPPGCHANPQAPPTPANEHDRGC 60

Query: 61 SAINRCRGG 68
          +  N+CRGG
Sbjct: 61 TKFNQCRGG 69

[Close]
BLAST of Csa2G191310 vs. TAIR10
Match: AT2G19020.1 (AT2G19020.1 ralf-like 10)

HSP 1 Score: 48.5 bits (114), Expect = 1.9e-06
Identity = 27/71 (38.03%), Postives = 34/71 (47.89%), Query Frame = 1 

Query: 1  MKSWLICLALIGMLVVGQEVAAETKHLKF--IDPCNQPSPPPTC----PNRDKVEEANPY 60
          MK+ +ICL +I   V+   V +  KHL +  I  C  P+PPP C      +     AN Y
Sbjct: 1  MKALVICLLVIFAAVIAVPVESRRKHLDYGVITKCAGPNPPPGCYPPGAQQKNPTPANEY 60

Query: 61 NRDCSAINRCR 66
           R CS I RC+
Sbjct: 61 RRGCSKITRCK 71

[Close]
BLAST of Csa2G191310 vs. NCBI nr
Match: gi|700206506|gb|KGN61625.1| (hypothetical protein Csa_2G191310 [Cucumis sativus])

HSP 1 Score: 150.2 bits (378), Expect = 1.3e-33
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 1 

Query: 1  MKSWLICLALIGMLVVGQEVAAETKHLKFIDPCNQPSPPPTCPNRDKVEEANPYNRDCSA 60
          MKSWLICLALIGMLVVGQEVAAETKHLKFIDPCNQPSPPPTCPNRDKVEEANPYNRDCSA
Sbjct: 1  MKSWLICLALIGMLVVGQEVAAETKHLKFIDPCNQPSPPPTCPNRDKVEEANPYNRDCSA 60

Query: 61 INRCRGGG 69
          INRCRGGG
Sbjct: 61 INRCRGGG 68

[Close]
BLAST of Csa2G191310 vs. NCBI nr
Match: gi|659102875|ref|XP_008452361.1| (PREDICTED: uncharacterized protein LOC103493422 [Cucumis melo])

HSP 1 Score: 104.0 bits (258), Expect = 1.1e-19
Identity = 47/56 (83.93%), Postives = 50/56 (89.29%), Query Frame = 1 

Query: 1  MKSWLICLALIGMLVVGQEVAAETKHLKFIDPCNQPSPPPTCPNRDKVEEANPYNR 57
          MKSWLICLALIGMLVVGQEV AETKHLKF+DPCNQPSPPPTC   +K EEAN Y+R
Sbjct: 1  MKSWLICLALIGMLVVGQEVTAETKHLKFLDPCNQPSPPPTCSKTEKREEANSYDR 56

[Close]
BLAST of Csa2G191310 vs. NCBI nr
Match: gi|700211681|gb|KGN66777.1| (hypothetical protein Csa_1G690160 [Cucumis sativus])

HSP 1 Score: 90.9 bits (224), Expect = 9.5e-16
Identity = 41/67 (61.19%), Postives = 51/67 (76.12%), Query Frame = 1 

Query: 1  MKSWLICLALIGMLVVGQEVAAETKHLKFIDPCNQPSPPPTCPNRDKVE-EANPYNRDCS 60
          MKSWLIC+  I MLV+ QEV A+T HLKF +PC+ PSPPP+C ++ K     NPY+R CS
Sbjct: 1  MKSWLICVVFISMLVMSQEVGAQTNHLKFPNPCDLPSPPPSCSSKVKDHAPTNPYDRGCS 60

Query: 61 AINRCRG 67
          AI+RCRG
Sbjct: 61 AIHRCRG 67

[Close]
BLAST of Csa2G191310 vs. NCBI nr
Match: gi|700211353|gb|KGN66449.1| (hypothetical protein Csa_1G610770 [Cucumis sativus])

HSP 1 Score: 84.0 bits (206), Expect = 1.2e-13
Identity = 39/67 (58.21%), Postives = 46/67 (68.66%), Query Frame = 1 

Query: 1   MKSWLICLALIGMLVVGQEVAAETKHLKFIDPCNQPSPPPTCPNRDKVEEANPYNRDCSA 60
           MKSWLIC AL+ MLV+  EVAAE K L F D C QPSPP +C   ++ +   PY+R CS 
Sbjct: 34  MKSWLICFALLSMLVMSHEVAAEGKFLNFSDLCLQPSPPKSCYKDERADSPIPYDRGCSP 93

Query: 61  INRCRGG 68
           I RCRGG
Sbjct: 94  ILRCRGG 100

[Close]
BLAST of Csa2G191310 vs. NCBI nr
Match: gi|659133750|ref|XP_008466886.1| (PREDICTED: uncharacterized protein LOC103504208, partial [Cucumis melo])

HSP 1 Score: 67.8 bits (164), Expect = 8.6e-09
Identity = 30/49 (61.22%), Postives = 35/49 (71.43%), Query Frame = 1 

Query: 1  MKSWLICLALIGMLVVGQEVAAETKHLKFIDPCNQPSPPPTCPNRDKVE 50
          MKSW IC AL+ ML+ G EV AETK LKF DPC QPSPP +C    +V+
Sbjct: 1  MKSWFICFALLSMLLTGHEVTAETKFLKFPDPCLQPSPPRSCYKHKRVD 49

The following BLAST results are available for this feature:
BLAST of Csa2G191310 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LI94_CUCSA9.1e-34100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_2G191310 PE=4 SV=1[more]
A0A0A0M0X3_CUCSA6.6e-1661.19Uncharacterized protein OS=Cucumis sativus GN=Csa_1G690160 PE=4 SV=1[more]
A0A0A0LZK3_CUCSA8.1e-1458.21Uncharacterized protein OS=Cucumis sativus GN=Csa_1G610770 PE=4 SV=1[more]
A0A059C4L8_EUCGR2.5e-0739.13Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_E01763 PE=4 SV=1[more]
BLAST of Csa2G191310 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G19020.11.9e-0638.03 ralf-like 10[more]
BLAST of Csa2G191310 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700206506|gb|KGN61625.1|1.3e-33100.00hypothetical protein Csa_2G191310 [Cucumis sativus][more]
gi|659102875|ref|XP_008452361.1|1.1e-1983.93PREDICTED: uncharacterized protein LOC103493422 [Cucumis melo][more]
gi|700211681|gb|KGN66777.1|9.5e-1661.19hypothetical protein Csa_1G690160 [Cucumis sativus][more]
gi|700211353|gb|KGN66449.1|1.2e-1358.21hypothetical protein Csa_1G610770 [Cucumis sativus][more]
gi|659133750|ref|XP_008466886.1|8.6e-0961.22PREDICTED: uncharacterized protein LOC103504208, partial [Cucumis melo][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR008801RALF
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa2G191310.1Csa2G191310.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008801Rapid ALkalinization FactorPFAMPF05498RALFcoord: 32..66
score: 1.

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa2G191310Melon (DHL92) v3.6.1cumedB134
Csa2G191310Melon (DHL92) v3.6.1cumedB137
Csa2G191310Silver-seed gourdcarcuB0254
Csa2G191310Silver-seed gourdcarcuB0261
Csa2G191310Silver-seed gourdcarcuB0766
Csa2G191310Silver-seed gourdcarcuB0974
Csa2G191310Silver-seed gourdcarcuB1090
Csa2G191310Watermelon (97103) v2cuwmbB129
Csa2G191310Watermelon (97103) v2cuwmbB131
Csa2G191310Watermelon (97103) v2cuwmbB147
Csa2G191310Watermelon (97103) v2cuwmbB154
Csa2G191310Wax gourdcuwgoB121
Csa2G191310Cucumber (Chinese Long) v2cucuB050
Csa2G191310Cucumber (Gy14) v1cgycuB362
Csa2G191310Cucumber (Gy14) v1cgycuB536
Csa2G191310Cucurbita maxima (Rimu)cmacuB238
Csa2G191310Cucurbita maxima (Rimu)cmacuB350
Csa2G191310Cucurbita maxima (Rimu)cmacuB508
Csa2G191310Cucurbita maxima (Rimu)cmacuB813
Csa2G191310Cucurbita maxima (Rimu)cmacuB881
Csa2G191310Cucurbita moschata (Rifu)cmocuB225
Csa2G191310Cucurbita moschata (Rifu)cmocuB339
Csa2G191310Cucurbita moschata (Rifu)cmocuB805
Csa2G191310Cucurbita moschata (Rifu)cmocuB868
Csa2G191310Melon (DHL92) v3.5.1cumeB089
Csa2G191310Melon (DHL92) v3.5.1cumeB145
Csa2G191310Watermelon (Charleston Gray)cuwcgB136
Csa2G191310Watermelon (Charleston Gray)cuwcgB153
Csa2G191310Watermelon (Charleston Gray)cuwcgB160
Csa2G191310Watermelon (97103) v1cuwmB116
Csa2G191310Watermelon (97103) v1cuwmB122
Csa2G191310Watermelon (97103) v1cuwmB172
Csa2G191310Cucurbita pepo (Zucchini)cpecuB127
Csa2G191310Cucurbita pepo (Zucchini)cpecuB237
Csa2G191310Cucurbita pepo (Zucchini)cpecuB306
Csa2G191310Cucurbita pepo (Zucchini)cpecuB596
Csa2G191310Cucurbita pepo (Zucchini)cpecuB849
Csa2G191310Bottle gourd (USVL1VR-Ls)culsiB087
Csa2G191310Bottle gourd (USVL1VR-Ls)culsiB127
Csa2G191310Bottle gourd (USVL1VR-Ls)culsiB129
Csa2G191310Cucumber (Gy14) v2cgybcuB056
Csa2G191310Cucumber (Gy14) v2cgybcuB101