Csa2G190790 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa2G190790
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionPhotosystem II reaction center protein I; contains IPR003686 (Photosystem II PsbI), IPR008896 (Uncharacterised protein family Ycf1)
LocationChr2 : 10269489 .. 10270222 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTACGAAGAAGAGAAGGGAGAGTTGCGTAACATTTGTATTTCTTTTATTTGTATTTAGTATATGCTAAGACAAACACAAGTATAGACTAAAACACAGTCTCACTATATACCAAGTAAAATGCTAAATCATTATACAATGTTTCTTTGTTCACTCTAGTACAATGCTAAATCTTCACACAATGCATTTCATTTTACCAAGTTCAATGTTAGTCAGATTAGTCAACATTTCTATGTTTCGATGCAACAACAAGATGTTATTTGTAACAAGTAGTTTTGTTGGTTAGTTAATTGGTATTCATGAAATCGGTTGGATTGATATTAGTATGGATACAACAAAATAATTCTCTTATATCTAAAAAGTACATTAGATCTAATAAATACCTTGTGTCAGAATTGAAAAATTCTATAGCTCCAATCTTTAGTATTATCTTATGAGTCCTTGATAGAGTCCCCCACAATATAGAATTGTGGGTATGAAATCCAATTTTGAGTAATCAAGGACTCAACTCTTTAAATTTTTTCCTATTTCTAAAAGTAACTTCACTGCATTTCTTGGTGTCAAAACAGATTAAAATAGAGAATCTATTCTCTTAAAAAAAAAATGATCTTGGAGATTGTGTAATGCTTACTCTCAAACTATTTGTTTATACAGTAGTAATATTCTTTGTTTCTCTCTTCATTTTCGGATTCCTATCTAATGACCCGGGACGTAATCCGGGGCGTGAAGAATAA

mRNA sequence

ATGTACGAAGAAGAGAAGGGAGAGTTGCGTAACATTTGTATTTCTTTTATTTGTATTTATACAATGCTAAATCTTCACACAATGCATTTCATTTTACCAAGTTCAATGTTAGTCAGATTAGTCAACATTTCTATGTTTCGATGCAACAACAAGATGTTATTTGTAACAATATGGATACAACAAAATAATTCTCTTATATCTAAAAAGTACATTAGATCTAATAAATACCTTGTGTCAGAATTGAAAAATTCTATAGCTCCAATCTTTAATTGTGTAATGCTTACTCTCAAACTATTTGTTTATACAGTAGTAATATTCTTTGTTTCTCTCTTCATTTTCGGATTCCTATCTAATGACCCGGGACGTAATCCGGGGCGTGAAGAATAA

Coding sequence (CDS)

ATGTACGAAGAAGAGAAGGGAGAGTTGCGTAACATTTGTATTTCTTTTATTTGTATTTATACAATGCTAAATCTTCACACAATGCATTTCATTTTACCAAGTTCAATGTTAGTCAGATTAGTCAACATTTCTATGTTTCGATGCAACAACAAGATGTTATTTGTAACAATATGGATACAACAAAATAATTCTCTTATATCTAAAAAGTACATTAGATCTAATAAATACCTTGTGTCAGAATTGAAAAATTCTATAGCTCCAATCTTTAATTGTGTAATGCTTACTCTCAAACTATTTGTTTATACAGTAGTAATATTCTTTGTTTCTCTCTTCATTTTCGGATTCCTATCTAATGACCCGGGACGTAATCCGGGGCGTGAAGAATAA

Protein sequence

MYEEEKGELRNICISFICIYTMLNLHTMHFILPSSMLVRLVNISMFRCNNKMLFVTIWIQQNNSLISKKYIRSNKYLVSELKNSIAPIFNCVMLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE*
Homology
[Close]
BLAST of Csa2G190790 vs. Swiss-Prot
Match: TI214_CUCSA (Protein TIC 214 OS=Cucumis sativus GN=TIC214 PE=3 SV=2)

HSP 1 Score: 115.2 bits (287), Expect = 5.5e-25
Identity = 61/109 (55.96%), Postives = 72/109 (66.06%), Query Frame = 1 

Query: 6   KGELRNICISFICIYTMLNLHTMHFILPSSMLVRLVNISMFRCNNKMLFVT--------- 65
           +  +RN+ I  + +  ++     HFILPSSMLVRLVNISMFRCNNKMLFVT         
Sbjct: 118 RNSMRNLSIQCVFLNNLIFQLFNHFILPSSMLVRLVNISMFRCNNKMLFVTSSFVGWLIG 177

Query: 66  ------------IWIQQNNSLISKKYIRSNKYLVSELKNSIAPIFNCVM 94
                       +WIQQNNS+ISKKYIRSNKYLVSEL+NSIAPIF+ ++
Sbjct: 178 HILFMKSVGLILVWIQQNNSIISKKYIRSNKYLVSELRNSIAPIFSIIL 226

[Close]
BLAST of Csa2G190790 vs. Swiss-Prot
Match: TI214_POPTR (Protein TIC 214 OS=Populus trichocarpa GN=TIC214 PE=3 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 1.6e-21
Identity = 57/109 (52.29%), Postives = 68/109 (62.39%), Query Frame = 1 

Query: 6   KGELRNICISFICIYTMLNLHTMHFILPSSMLVRLVNISMFRCNNKMLFVT--------- 65
           +  +RN+ I  + +  ++     HFILPSSMLVRLVNI MFRCNNKMLFVT         
Sbjct: 121 RNSMRNLSIQCVFLNNLIFQLFNHFILPSSMLVRLVNIYMFRCNNKMLFVTSSFVGWLIG 180

Query: 66  ------------IWIQQNNSLISKKYIRSNKYLVSELKNSIAPIFNCVM 94
                       +WIQQNNSL S KYIRSNKYLVSEL+NS+A IF+ ++
Sbjct: 181 HILFMKWVGLILVWIQQNNSLRSNKYIRSNKYLVSELRNSMARIFSILL 229

[Close]
BLAST of Csa2G190790 vs. Swiss-Prot
Match: TI214_POPAL (Protein TIC 214 OS=Populus alba GN=TIC214 PE=3 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 1.6e-21
Identity = 57/109 (52.29%), Postives = 68/109 (62.39%), Query Frame = 1 

Query: 6   KGELRNICISFICIYTMLNLHTMHFILPSSMLVRLVNISMFRCNNKMLFVT--------- 65
           +  +RN+ I  + +  ++     HFILPSSMLVRLVNI MFRCNNKMLFVT         
Sbjct: 121 RNSMRNLSIQCVFLNNLIFQLFNHFILPSSMLVRLVNIYMFRCNNKMLFVTSSFVGWLIG 180

Query: 66  ------------IWIQQNNSLISKKYIRSNKYLVSELKNSIAPIFNCVM 94
                       +WIQQNNSL S KYIRSNKYLVSEL+NS+A IF+ ++
Sbjct: 181 HILFMKWVGLILVWIQQNNSLRSNKYIRSNKYLVSELRNSMARIFSILL 229

[Close]
BLAST of Csa2G190790 vs. Swiss-Prot
Match: TI214_EUCGG (Protein TIC 214 OS=Eucalyptus globulus subsp. globulus GN=TIC214 PE=3 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 8.2e-21
Identity = 55/109 (50.46%), Postives = 67/109 (61.47%), Query Frame = 1 

Query: 6   KGELRNICISFICIYTMLNLHTMHFILPSSMLVRLVNISMFRCNNKMLFVT--------- 65
           +  +RN+ I  + +  ++     HFILPSSML RLVNI MFRCNNKMLFVT         
Sbjct: 121 RNSMRNLSIQCVFLNNLIFQLFNHFILPSSMLARLVNIYMFRCNNKMLFVTSSFVGWLIG 180

Query: 66  ------------IWIQQNNSLISKKYIRSNKYLVSELKNSIAPIFNCVM 94
                       +WIQQNNS+ S KYIRSNKYLVSEL+NS+A IF+ ++
Sbjct: 181 HIFFMKWVELVLVWIQQNNSIRSNKYIRSNKYLVSELRNSMARIFSILL 229

[Close]
BLAST of Csa2G190790 vs. Swiss-Prot
Match: TI214_PANGI (Protein TIC 214 OS=Panax ginseng GN=TIC214 PE=3 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 3.4e-19
Identity = 53/109 (48.62%), Postives = 66/109 (60.55%), Query Frame = 1 

Query: 6   KGELRNICISFICIYTMLNLHTMHFILPSSMLVRLVNISMFRCNNKMLFVT--------- 65
           +  +RN+ I  + +  ++     HFILPSSML RLVNI MFRCNNKMLFVT         
Sbjct: 121 RNSMRNLSIQCVFLNNLIFQLFNHFILPSSMLARLVNIYMFRCNNKMLFVTSSFVGWLIG 180

Query: 66  ------------IWIQQNNSLISKKYIRSNKYLVSELKNSIAPIFNCVM 94
                       +WI+QN+S+ S KYIRSNKYLVSEL NS+A IF+ ++
Sbjct: 181 HILFMKWVGLVLVWIRQNHSIRSNKYIRSNKYLVSELINSMARIFSILL 229

[Close]
BLAST of Csa2G190790 vs. TrEMBL
Match: A0A0A0LLK2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G190790 PE=3 SV=1)

HSP 1 Score: 260.4 bits (664), Expect = 1.2e-66
Identity = 128/128 (100.00%), Postives = 128/128 (100.00%), Query Frame = 1 

Query: 1   MYEEEKGELRNICISFICIYTMLNLHTMHFILPSSMLVRLVNISMFRCNNKMLFVTIWIQ 60
           MYEEEKGELRNICISFICIYTMLNLHTMHFILPSSMLVRLVNISMFRCNNKMLFVTIWIQ
Sbjct: 1   MYEEEKGELRNICISFICIYTMLNLHTMHFILPSSMLVRLVNISMFRCNNKMLFVTIWIQ 60

Query: 61  QNNSLISKKYIRSNKYLVSELKNSIAPIFNCVMLTLKLFVYTVVIFFVSLFIFGFLSNDP 120
           QNNSLISKKYIRSNKYLVSELKNSIAPIFNCVMLTLKLFVYTVVIFFVSLFIFGFLSNDP
Sbjct: 61  QNNSLISKKYIRSNKYLVSELKNSIAPIFNCVMLTLKLFVYTVVIFFVSLFIFGFLSNDP 120

Query: 121 GRNPGREE 129
           GRNPGREE
Sbjct: 121 GRNPGREE 128

[Close]
BLAST of Csa2G190790 vs. TrEMBL
Match: A0A0A0V4R5_POPTR (Hypothetical chloroplast RF19 OS=Populus trichocarpa GN=ycf1 PE=4 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 1.8e-19
Identity = 57/109 (52.29%), Postives = 70/109 (64.22%), Query Frame = 1 

Query: 6   KGELRNICISFICIYTMLNLHTMHFILPSSMLVRLVNISMFRCNNKMLFVT--------- 65
           +  +RN+ I  + +  ++     HFILPSSMLVRLVNI MFRCNNKMLFVT         
Sbjct: 121 RNSMRNLSIQCVFLNNLIFQLFNHFILPSSMLVRLVNIYMFRCNNKMLFVTSSFVGWLIG 180

Query: 66  ------------IWIQQNNSLISKKYIRSNKYLVSELKNSIAPIFNCVM 94
                       +WIQQNNSL S KYIRSNKYLVSEL+NS+A IF+ ++
Sbjct: 181 HILFMKWVGLILVWIQQNNSLRSNKYIRSNKYLVSELRNSMARIFSILL 229

[Close]
BLAST of Csa2G190790 vs. TrEMBL
Match: A0A075EBU9_9ROSI (Ycf1 OS=Populus fremontii GN=ycf1 PE=4 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 1.8e-19
Identity = 57/109 (52.29%), Postives = 70/109 (64.22%), Query Frame = 1 

Query: 6   KGELRNICISFICIYTMLNLHTMHFILPSSMLVRLVNISMFRCNNKMLFVT--------- 65
           +  +RN+ I  + +  ++     HFILPSSMLVRLVNI MFRCNNKMLFVT         
Sbjct: 121 RNSMRNLSIQCVFLNNLIFQLFNHFILPSSMLVRLVNIYMFRCNNKMLFVTSSFVGWLIG 180

Query: 66  ------------IWIQQNNSLISKKYIRSNKYLVSELKNSIAPIFNCVM 94
                       +WIQQNNSL S KYIRSNKYLVSEL+NS+A IF+ ++
Sbjct: 181 HILFMKWVGLILVWIQQNNSLRSNKYIRSNKYLVSELRNSMARIFSILL 229

[Close]
BLAST of Csa2G190790 vs. TrEMBL
Match: A0A0D4WP77_POPTN (Ycf1 OS=Populus tremula GN=ycf1 PE=4 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 1.8e-19
Identity = 57/109 (52.29%), Postives = 70/109 (64.22%), Query Frame = 1 

Query: 6   KGELRNICISFICIYTMLNLHTMHFILPSSMLVRLVNISMFRCNNKMLFVT--------- 65
           +  +RN+ I  + +  ++     HFILPSSMLVRLVNI MFRCNNKMLFVT         
Sbjct: 121 RNSMRNLSIQCVFLNNLIFQLFNHFILPSSMLVRLVNIYMFRCNNKMLFVTSSFVGWLIG 180

Query: 66  ------------IWIQQNNSLISKKYIRSNKYLVSELKNSIAPIFNCVM 94
                       +WIQQNNSL S KYIRSNKYLVSEL+NS+A IF+ ++
Sbjct: 181 HILFMKWVGLILVWIQQNNSLRSNKYIRSNKYLVSELRNSMARIFSILL 229

[Close]
BLAST of Csa2G190790 vs. TrEMBL
Match: A0A0D4WP19_POPTN (Ycf1 OS=Populus tremula GN=ycf1 PE=4 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 1.8e-19
Identity = 57/109 (52.29%), Postives = 70/109 (64.22%), Query Frame = 1 

Query: 6   KGELRNICISFICIYTMLNLHTMHFILPSSMLVRLVNISMFRCNNKMLFVT--------- 65
           +  +RN+ I  + +  ++     HFILPSSMLVRLVNI MFRCNNKMLFVT         
Sbjct: 121 RNSMRNLSIQCVFLNNLIFQLFNHFILPSSMLVRLVNIYMFRCNNKMLFVTSSFVGWLIG 180

Query: 66  ------------IWIQQNNSLISKKYIRSNKYLVSELKNSIAPIFNCVM 94
                       +WIQQNNSL S KYIRSNKYLVSEL+NS+A IF+ ++
Sbjct: 181 HILFMKWVGLILVWIQQNNSLRSNKYIRSNKYLVSELRNSMARIFSILL 229

[Close]
BLAST of Csa2G190790 vs. TAIR10
Match: ATCG01130.1 (ATCG01130.1 Ycf1 protein)

HSP 1 Score: 91.7 bits (226), Expect = 3.7e-19
Identity = 54/111 (48.65%), Postives = 66/111 (59.46%), Query Frame = 1 

Query: 6   KGELRNICISFICIYTMLNLHTMHFILPSSMLVRLVNISMFRCNNKMLFVT--------- 65
           + E+RN+ I  + +  ++     HFILPSSML RLVNI MFRCNNKMLFVT         
Sbjct: 122 RNEMRNLRIQCVFLNNLIFQLFNHFILPSSMLARLVNIYMFRCNNKMLFVTSSFVGWLIG 181

Query: 66  ------------IWIQQNNSLISKKYIRSNKY--LVSELKNSIAPIFNCVM 94
                       +WIQQNNS+ S   IRSNKY  LVSEL+NS+A IF+ ++
Sbjct: 182 HILFMKWVGLVLVWIQQNNSIRSNVVIRSNKYKFLVSELRNSMARIFSILL 232

[Close]
BLAST of Csa2G190790 vs. TAIR10
Match: ATCG01000.1 (ATCG01000.1 Ycf1 protein)

HSP 1 Score: 91.7 bits (226), Expect = 3.7e-19
Identity = 54/111 (48.65%), Postives = 66/111 (59.46%), Query Frame = 1 

Query: 6   KGELRNICISFICIYTMLNLHTMHFILPSSMLVRLVNISMFRCNNKMLFVT--------- 65
           + E+RN+ I  + +  ++     HFILPSSML RLVNI MFRCNNKMLFVT         
Sbjct: 122 RNEMRNLRIQCVFLNNLIFQLFNHFILPSSMLARLVNIYMFRCNNKMLFVTSSFVGWLIG 181

Query: 66  ------------IWIQQNNSLISKKYIRSNKY--LVSELKNSIAPIFNCVM 94
                       +WIQQNNS+ S   IRSNKY  LVSEL+NS+A IF+ ++
Sbjct: 182 HILFMKWVGLVLVWIQQNNSIRSNVVIRSNKYKFLVSELRNSMARIFSILL 232

[Close]
BLAST of Csa2G190790 vs. TAIR10
Match: ATCG00080.1 (ATCG00080.1 photosystem II reaction center protein I)

HSP 1 Score: 75.9 bits (185), Expect = 2.1e-14
Identity = 36/36 (100.00%), Postives = 34/36 (94.44%), Query Frame = 1 

Query: 93  MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 129
           MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct: 1   MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36

[Close]
BLAST of Csa2G190790 vs. TAIR10
Match: AT2G07739.1 (AT2G07739.1 Ycf1 protein)

HSP 1 Score: 57.0 bits (136), Expect = 1.0e-08
Identity = 29/51 (56.86%), Postives = 33/51 (64.71%), Query Frame = 1 

Query: 6   KGELRNICISFICIYTMLNLHTMHFILPSSMLVRLVNISMFRCNNKMLFVT 57
           + E+RN+ I  +    ++     H ILPSSML RLVNI MFRCNNKMLFVT
Sbjct: 122 RNEMRNLRIQCVFPNNLIFKLFNHLILPSSMLARLVNIYMFRCNNKMLFVT 172

[Close]
BLAST of Csa2G190790 vs. TAIR10
Match: ATMG00370.1 (ATMG00370.1 Ycf1 protein)

HSP 1 Score: 57.0 bits (136), Expect = 1.0e-08
Identity = 29/51 (56.86%), Postives = 33/51 (64.71%), Query Frame = 1 

Query: 6   KGELRNICISFICIYTMLNLHTMHFILPSSMLVRLVNISMFRCNNKMLFVT 57
           + E+RN+ I  +    ++     H ILPSSML RLVNI MFRCNNKMLFVT
Sbjct: 122 RNEMRNLRIQCVFPNNLIFKLFNHLILPSSMLARLVNIYMFRCNNKMLFVT 172

[Close]
BLAST of Csa2G190790 vs. NCBI nr
Match: gi|700206503|gb|KGN61622.1| (hypothetical protein Csa_2G190790 [Cucumis sativus])

HSP 1 Score: 260.4 bits (664), Expect = 1.7e-66
Identity = 128/128 (100.00%), Postives = 128/128 (100.00%), Query Frame = 1 

Query: 1   MYEEEKGELRNICISFICIYTMLNLHTMHFILPSSMLVRLVNISMFRCNNKMLFVTIWIQ 60
           MYEEEKGELRNICISFICIYTMLNLHTMHFILPSSMLVRLVNISMFRCNNKMLFVTIWIQ
Sbjct: 1   MYEEEKGELRNICISFICIYTMLNLHTMHFILPSSMLVRLVNISMFRCNNKMLFVTIWIQ 60

Query: 61  QNNSLISKKYIRSNKYLVSELKNSIAPIFNCVMLTLKLFVYTVVIFFVSLFIFGFLSNDP 120
           QNNSLISKKYIRSNKYLVSELKNSIAPIFNCVMLTLKLFVYTVVIFFVSLFIFGFLSNDP
Sbjct: 61  QNNSLISKKYIRSNKYLVSELKNSIAPIFNCVMLTLKLFVYTVVIFFVSLFIFGFLSNDP 120

Query: 121 GRNPGREE 129
           GRNPGREE
Sbjct: 121 GRNPGREE 128

[Close]
BLAST of Csa2G190790 vs. NCBI nr
Match: gi|158518591|sp|Q4VZL0.2|TI214_CUCSA (RecName: Full=Protein TIC 214; AltName: Full=Translocon at the inner envelope membrane of chloroplasts 214; Short=AtTIC214)

HSP 1 Score: 115.2 bits (287), Expect = 8.7e-23
Identity = 61/109 (55.96%), Postives = 74/109 (67.89%), Query Frame = 1 

Query: 6   KGELRNICISFICIYTMLNLHTMHFILPSSMLVRLVNISMFRCNNKMLFVT--------- 65
           +  +RN+ I  + +  ++     HFILPSSMLVRLVNISMFRCNNKMLFVT         
Sbjct: 118 RNSMRNLSIQCVFLNNLIFQLFNHFILPSSMLVRLVNISMFRCNNKMLFVTSSFVGWLIG 177

Query: 66  ------------IWIQQNNSLISKKYIRSNKYLVSELKNSIAPIFNCVM 94
                       +WIQQNNS+ISKKYIRSNKYLVSEL+NSIAPIF+ ++
Sbjct: 178 HILFMKSVGLILVWIQQNNSIISKKYIRSNKYLVSELRNSIAPIFSIIL 226

[Close]
BLAST of Csa2G190790 vs. NCBI nr
Match: gi|68164862|ref|YP_247658.1| (hypothetical protein CsCp113 [Cucumis sativus])

HSP 1 Score: 115.2 bits (287), Expect = 8.7e-23
Identity = 61/109 (55.96%), Postives = 74/109 (67.89%), Query Frame = 1 

Query: 6   KGELRNICISFICIYTMLNLHTMHFILPSSMLVRLVNISMFRCNNKMLFVT--------- 65
           +  +RN+ I  + +  ++     HFILPSSMLVRLVNISMFRCNNKMLFVT         
Sbjct: 118 RNSMRNLSIQCVFLNNLIFQLFNHFILPSSMLVRLVNISMFRCNNKMLFVTSSFVGWLIG 177

Query: 66  ------------IWIQQNNSLISKKYIRSNKYLVSELKNSIAPIFNCVM 94
                       +WIQQNNS+ISKKYIRSNKYLVSEL+NSIAPIF+ ++
Sbjct: 178 HILFMKSVGLILVWIQQNNSIISKKYIRSNKYLVSELRNSIAPIFSIIL 226

[Close]
BLAST of Csa2G190790 vs. NCBI nr
Match: gi|74027156|gb|AAZ94706.1| (hypothetical protein [Cucumis sativus])

HSP 1 Score: 115.2 bits (287), Expect = 8.7e-23
Identity = 61/109 (55.96%), Postives = 74/109 (67.89%), Query Frame = 1 

Query: 6   KGELRNICISFICIYTMLNLHTMHFILPSSMLVRLVNISMFRCNNKMLFVT--------- 65
           +  +RN+ I  + +  ++     HFILPSSMLVRLVNISMFRCNNKMLFVT         
Sbjct: 118 RNSMRNLSIQCVFLNNLIFQLFNHFILPSSMLVRLVNISMFRCNNKMLFVTSSFVGWLIG 177

Query: 66  ------------IWIQQNNSLISKKYIRSNKYLVSELKNSIAPIFNCVM 94
                       +WIQQNNS+ISKKYIRSNKYLVSEL+NSIAPIF+ ++
Sbjct: 178 HILFMKSVGLILVWIQQNNSIISKKYIRSNKYLVSELRNSIAPIFSIIL 226

[Close]
BLAST of Csa2G190790 vs. NCBI nr
Match: gi|68164850|ref|YP_247646.1| (hypothetical protein CsCp100 [Cucumis sativus])

HSP 1 Score: 108.6 bits (270), Expect = 8.2e-21
Identity = 59/104 (56.73%), Postives = 69/104 (66.35%), Query Frame = 1 

Query: 6   KGELRNICISFICIYTMLNLHTMHFILPSSMLVRLVNISMFRCNNKMLFVT--------- 65
           +  +RN+ I  + +  ++     HFILPSSMLVRLVNISMFRCNNKMLFVT         
Sbjct: 119 RNSMRNLSIQCVFLNNLIFQLFNHFILPSSMLVRLVNISMFRCNNKMLFVTSSFVGWLIG 178

Query: 66  ------------IWIQQNNSLISKKYIRSNKYLVSELKNSIAPI 89
                       +WIQQNNS+ISKKYI SNKYLVSEL+NSIAPI
Sbjct: 179 HILFMKSVGLILVWIQQNNSIISKKYISSNKYLVSELRNSIAPI 222

The following BLAST results are available for this feature:
BLAST of Csa2G190790 vs. Swiss-Prot
Match NameE-valueIdentityDescription
TI214_CUCSA5.5e-2555.96Protein TIC 214 OS=Cucumis sativus GN=TIC214 PE=3 SV=2[more]
TI214_POPTR1.6e-2152.29Protein TIC 214 OS=Populus trichocarpa GN=TIC214 PE=3 SV=1[more]
TI214_POPAL1.6e-2152.29Protein TIC 214 OS=Populus alba GN=TIC214 PE=3 SV=1[more]
TI214_EUCGG8.2e-2150.46Protein TIC 214 OS=Eucalyptus globulus subsp. globulus GN=TIC214 PE=3 SV=1[more]
TI214_PANGI3.4e-1948.62Protein TIC 214 OS=Panax ginseng GN=TIC214 PE=3 SV=1[more]
BLAST of Csa2G190790 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LLK2_CUCSA1.2e-66100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_2G190790 PE=3 SV=1[more]
A0A0A0V4R5_POPTR1.8e-1952.29Hypothetical chloroplast RF19 OS=Populus trichocarpa GN=ycf1 PE=4 SV=1[more]
A0A075EBU9_9ROSI1.8e-1952.29Ycf1 OS=Populus fremontii GN=ycf1 PE=4 SV=1[more]
A0A0D4WP77_POPTN1.8e-1952.29Ycf1 OS=Populus tremula GN=ycf1 PE=4 SV=1[more]
A0A0D4WP19_POPTN1.8e-1952.29Ycf1 OS=Populus tremula GN=ycf1 PE=4 SV=1[more]
BLAST of Csa2G190790 vs. TAIR10
Match NameE-valueIdentityDescription
ATCG01130.13.7e-1948.65ATCG01130.1 Ycf1 protein[more]
ATCG01000.13.7e-1948.65ATCG01000.1 Ycf1 protein[more]
ATCG00080.12.1e-14100.00ATCG00080.1 photosystem II reaction center protein I[more]
AT2G07739.11.0e-0856.86 Ycf1 protein[more]
ATMG00370.11.0e-0856.86ATMG00370.1 Ycf1 protein[more]
BLAST of Csa2G190790 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700206503|gb|KGN61622.1|1.7e-66100.00hypothetical protein Csa_2G190790 [Cucumis sativus][more]
gi|158518591|sp|Q4VZL0.2|TI214_CUCSA8.7e-2355.96RecName: Full=Protein TIC 214; AltName: Full=Translocon at the inner envelope me... [more]
gi|68164862|ref|YP_247658.1|8.7e-2355.96hypothetical protein CsCp113 [Cucumis sativus][more]
gi|74027156|gb|AAZ94706.1|8.7e-2355.96hypothetical protein [Cucumis sativus][more]
gi|68164850|ref|YP_247646.1|8.2e-2156.73hypothetical protein CsCp100 [Cucumis sativus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR003686PSII_PsbI
IPR008896TIC214
Vocabulary: Cellular Component
TermDefinition
GO:0009523photosystem II
GO:0009539photosystem II reaction center
GO:0016020membrane
GO:0016021integral component of membrane
Vocabulary: Biological Process
TermDefinition
GO:0015979photosynthesis
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015979 photosynthesis
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0009539 photosystem II reaction center
cellular_component GO:0009536 plastid
cellular_component GO:0016020 membrane
cellular_component GO:0009523 photosystem II
cellular_component GO:0009535 chloroplast thylakoid membrane
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU121113cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa2G190790.1Csa2G190790.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU121113CU121113transcribed_cluster


InterPro
Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003686Photosystem II PsbIHAMAPMF_01316PSII_PsbIcoord: 93..128
score: 17
IPR003686Photosystem II PsbIPFAMPF02532PsbIcoord: 93..127
score: 3.5
IPR008896Protein TIC214PFAMPF05758Ycf1coord: 54..95
score: 1.9E-10coord: 6..56
score: 2.5
NoneNo IPR availablePANTHERPTHR33163FAMILY NOT NAMEDcoord: 19..89
score: 6.3
NoneNo IPR availablePANTHERPTHR33163:SF3MEMBRANE PROTEIN YCF1-RELATEDcoord: 19..89
score: 6.3
NoneNo IPR availableunknownSSF161041Photosystem II reaction center protein I, PsbIcoord: 93..126
score: 1.96

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa2G190790CsGy2G010590Cucumber (Gy14) v2cgybcuB056
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa2G190790Melon (DHL92) v3.6.1cumedB134
Csa2G190790Melon (DHL92) v3.6.1cumedB137
Csa2G190790Silver-seed gourdcarcuB0254
Csa2G190790Silver-seed gourdcarcuB0261
Csa2G190790Silver-seed gourdcarcuB0766
Csa2G190790Silver-seed gourdcarcuB0974
Csa2G190790Silver-seed gourdcarcuB1090
Csa2G190790Watermelon (97103) v2cuwmbB129
Csa2G190790Watermelon (97103) v2cuwmbB131
Csa2G190790Watermelon (97103) v2cuwmbB147
Csa2G190790Watermelon (97103) v2cuwmbB154
Csa2G190790Wax gourdcuwgoB121
Csa2G190790Cucumber (Chinese Long) v2cucuB050
Csa2G190790Cucumber (Gy14) v1cgycuB362
Csa2G190790Cucumber (Gy14) v1cgycuB536
Csa2G190790Cucurbita maxima (Rimu)cmacuB238
Csa2G190790Cucurbita maxima (Rimu)cmacuB350
Csa2G190790Cucurbita maxima (Rimu)cmacuB508
Csa2G190790Cucurbita maxima (Rimu)cmacuB813
Csa2G190790Cucurbita maxima (Rimu)cmacuB881
Csa2G190790Cucurbita moschata (Rifu)cmocuB225
Csa2G190790Cucurbita moschata (Rifu)cmocuB339
Csa2G190790Cucurbita moschata (Rifu)cmocuB805
Csa2G190790Cucurbita moschata (Rifu)cmocuB868
Csa2G190790Melon (DHL92) v3.5.1cumeB089
Csa2G190790Melon (DHL92) v3.5.1cumeB145
Csa2G190790Watermelon (Charleston Gray)cuwcgB136
Csa2G190790Watermelon (Charleston Gray)cuwcgB153
Csa2G190790Watermelon (Charleston Gray)cuwcgB160
Csa2G190790Watermelon (97103) v1cuwmB116
Csa2G190790Watermelon (97103) v1cuwmB122
Csa2G190790Watermelon (97103) v1cuwmB172
Csa2G190790Cucurbita pepo (Zucchini)cpecuB127
Csa2G190790Cucurbita pepo (Zucchini)cpecuB237
Csa2G190790Cucurbita pepo (Zucchini)cpecuB306
Csa2G190790Cucurbita pepo (Zucchini)cpecuB596
Csa2G190790Cucurbita pepo (Zucchini)cpecuB849
Csa2G190790Bottle gourd (USVL1VR-Ls)culsiB087
Csa2G190790Bottle gourd (USVL1VR-Ls)culsiB127
Csa2G190790Bottle gourd (USVL1VR-Ls)culsiB129
Csa2G190790Cucumber (Gy14) v2cgybcuB101