Csa2G176690 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa2G176690
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Proline-rich protein
Location	Chr2 : 10086755 .. 10087324 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGGTTCCCAATAGGCAAAACTCAAACTCGAAAAGCCACAATGTTTCCCAAATACTTTCTTCTCCTTCTTCTCGCAGTTGTGCTTCTTACCACAACTCAAGCACTGAAGCATCCCTTCAACTCCAACCAAGAACGTATTCCATCCACCGACCTCACCCACGGAAAGCTCCCGACCACCATCACTGATCCAAACGAAGAATCCAAATTCTTCAGGAGGCCATCTCCCTACAAGAAACCCTACAAGAGGCCACCCTACAAGAAGTATCCACCCTATAAGAAACGCCCTCCATACAAGAAGTACCCACCCTCTTCTCACTAAATGGCATCCAAAACAAAAGTTGTGGCCATGGACAATGTGGCATCTGTTTAATTTCTTTGATAAATAAGTGGTGCTATAAGCTCCGAGTCCTAGGGTAATACTTGGAAGCTCATGAAGTTGGCACTTATGTAATATGTGTTAATCCAAACTTTATATCTCTGATATATTGTTGTATTATTTGTCTCTACGTTATTATTGCTTTCCTTATCGTATAATAATCTAAAGTTTAAATAAATTTACTACTTTCGT

mRNA sequence

ATGAGGTTCCCAATAGGCAAAACTCAAACTCGAAAAGCCACAATGTTTCCCAAATACTTTCTTCTCCTTCTTCTCGCAGTTGTGCTTCTTACCACAACTCAAGCACTGAAGCATCCCTTCAACTCCAACCAAGAACGTATTCCATCCACCGACCTCACCCACGGAAAGCTCCCGACCACCATCACTGATCCAAACGAAGAATCCAAATTCTTCAGGAGGCCATCTCCCTACAAGAAACCCTACAAGAGGCCACCCTACAAGAAGTATCCACCCTATAAGAAACGCCCTCCATACAAGAAGTACCCACCCTCTTCTCACTAA

Coding sequence (CDS)

ATGAGGTTCCCAATAGGCAAAACTCAAACTCGAAAAGCCACAATGTTTCCCAAATACTTTCTTCTCCTTCTTCTCGCAGTTGTGCTTCTTACCACAACTCAAGCACTGAAGCATCCCTTCAACTCCAACCAAGAACGTATTCCATCCACCGACCTCACCCACGGAAAGCTCCCGACCACCATCACTGATCCAAACGAAGAATCCAAATTCTTCAGGAGGCCATCTCCCTACAAGAAACCCTACAAGAGGCCACCCTACAAGAAGTATCCACCCTATAAGAAACGCCCTCCATACAAGAAGTACCCACCCTCTTCTCACTAA

Protein sequence

MRFPIGKTQTRKATMFPKYFLLLLLAVVLLTTTQALKHPFNSNQERIPSTDLTHGKLPTTITDPNEESKFFRRPSPYKKPYKRPPYKKYPPYKKRPPYKKYPPSSH*

Homology

[Close]

BLAST of Csa2G176690 vs. TrEMBL
Match: A0A0A0LNP2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G176690 PE=4 SV=1)

HSP 1 Score: 227.3 bits (578), Expect = 9.1e-57
Identity = 106/106 (100.00%), Postives = 106/106 (100.00%), Query Frame = 1


Query: 1   MRFPIGKTQTRKATMFPKYFLLLLLAVVLLTTTQALKHPFNSNQERIPSTDLTHGKLPTT 60
           MRFPIGKTQTRKATMFPKYFLLLLLAVVLLTTTQALKHPFNSNQERIPSTDLTHGKLPTT
Sbjct: 1   MRFPIGKTQTRKATMFPKYFLLLLLAVVLLTTTQALKHPFNSNQERIPSTDLTHGKLPTT 60

Query: 61  ITDPNEESKFFRRPSPYKKPYKRPPYKKYPPYKKRPPYKKYPPSSH 107
           ITDPNEESKFFRRPSPYKKPYKRPPYKKYPPYKKRPPYKKYPPSSH
Sbjct: 61  ITDPNEESKFFRRPSPYKKPYKRPPYKKYPPYKKRPPYKKYPPSSH 106

[Close]

BLAST of Csa2G176690 vs. TrEMBL
Match: A0A0A0LI79_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G176190 PE=4 SV=1)

HSP 1 Score: 209.5 bits (532), Expect = 2.0e-51
Identity = 97/106 (91.51%), Postives = 102/106 (96.23%), Query Frame = 1


Query: 1   MRFPIGKTQTRKATMFPKYFLLLLLAVVLLTTTQALKHPFNSNQERIPSTDLTHGKLPTT 60
           MRFP+GKTQT KATMF KYFLLLLLAVVLLTTTQALKHP NSNQE IP+TD+THGKLPTT
Sbjct: 1   MRFPVGKTQTPKATMFLKYFLLLLLAVVLLTTTQALKHPSNSNQEVIPTTDVTHGKLPTT 60

Query: 61  ITDPNEESKFFRRPSPYKKPYKRPPYKKYPPYKKRPPYKKYPPSSH 107
           ITDPNEESKF+RRPSPYKKPYKRPPYK+YPPYKKRPPYKKYPPSSH
Sbjct: 61  ITDPNEESKFYRRPSPYKKPYKRPPYKRYPPYKKRPPYKKYPPSSH 106

[Close]

BLAST of Csa2G176690 vs. TrEMBL
Match: Q8H0R6_CUCSA (Proline-rich protein OS=Cucumis sativus GN=prp1 PE=2 SV=1)

HSP 1 Score: 199.5 bits (506), Expect = 2.0e-48
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 1


Query: 15  MFPKYFLLLLLAVVLLTTTQALKHPFNSNQERIPSTDLTHGKLPTTITDPNEESKFFRRP 74
           MFPKYFLLLLLAVVLLTTTQALKHPFNSNQERIPSTDLTHGKLPTTITDPNEESKFFRRP
Sbjct: 1   MFPKYFLLLLLAVVLLTTTQALKHPFNSNQERIPSTDLTHGKLPTTITDPNEESKFFRRP 60

Query: 75  SPYKKPYKRPPYKKYPPYKKRPPYKKYPPSSH 107
           SPYKKPYKRPPYKKYPPYKKRPPYKKYPPSSH
Sbjct: 61  SPYKKPYKRPPYKKYPPYKKRPPYKKYPPSSH 92

[Close]

BLAST of Csa2G176690 vs. NCBI nr
Match: gi|700206487|gb|KGN61606.1| (hypothetical protein Csa_2G176690 [Cucumis sativus])

HSP 1 Score: 227.3 bits (578), Expect = 1.3e-56
Identity = 106/106 (100.00%), Postives = 106/106 (100.00%), Query Frame = 1


Query: 1   MRFPIGKTQTRKATMFPKYFLLLLLAVVLLTTTQALKHPFNSNQERIPSTDLTHGKLPTT 60
           MRFPIGKTQTRKATMFPKYFLLLLLAVVLLTTTQALKHPFNSNQERIPSTDLTHGKLPTT
Sbjct: 1   MRFPIGKTQTRKATMFPKYFLLLLLAVVLLTTTQALKHPFNSNQERIPSTDLTHGKLPTT 60

Query: 61  ITDPNEESKFFRRPSPYKKPYKRPPYKKYPPYKKRPPYKKYPPSSH 107
           ITDPNEESKFFRRPSPYKKPYKRPPYKKYPPYKKRPPYKKYPPSSH
Sbjct: 61  ITDPNEESKFFRRPSPYKKPYKRPPYKKYPPYKKRPPYKKYPPSSH 106

[Close]

BLAST of Csa2G176690 vs. NCBI nr
Match: gi|778668784|ref|XP_004147144.2| (PREDICTED: repetitive proline-rich cell wall protein 3-like [Cucumis sativus])

HSP 1 Score: 209.5 bits (532), Expect = 2.8e-51
Identity = 97/106 (91.51%), Postives = 102/106 (96.23%), Query Frame = 1


Query: 1   MRFPIGKTQTRKATMFPKYFLLLLLAVVLLTTTQALKHPFNSNQERIPSTDLTHGKLPTT 60
           MRFP+GKTQT KATMF KYFLLLLLAVVLLTTTQALKHP NSNQE IP+TD+THGKLPTT
Sbjct: 1   MRFPVGKTQTPKATMFLKYFLLLLLAVVLLTTTQALKHPSNSNQEVIPTTDVTHGKLPTT 60

Query: 61  ITDPNEESKFFRRPSPYKKPYKRPPYKKYPPYKKRPPYKKYPPSSH 107
           ITDPNEESKF+RRPSPYKKPYKRPPYK+YPPYKKRPPYKKYPPSSH
Sbjct: 61  ITDPNEESKFYRRPSPYKKPYKRPPYKRYPPYKKRPPYKKYPPSSH 106

[Close]

BLAST of Csa2G176690 vs. NCBI nr
Match: gi|525507184|ref|NP_001267631.1| (uncharacterized protein LOC101210961 precursor [Cucumis sativus])

HSP 1 Score: 199.5 bits (506), Expect = 2.9e-48
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 1


Query: 15  MFPKYFLLLLLAVVLLTTTQALKHPFNSNQERIPSTDLTHGKLPTTITDPNEESKFFRRP 74
           MFPKYFLLLLLAVVLLTTTQALKHPFNSNQERIPSTDLTHGKLPTTITDPNEESKFFRRP
Sbjct: 1   MFPKYFLLLLLAVVLLTTTQALKHPFNSNQERIPSTDLTHGKLPTTITDPNEESKFFRRP 60

Query: 75  SPYKKPYKRPPYKKYPPYKKRPPYKKYPPSSH 107
           SPYKKPYKRPPYKKYPPYKKRPPYKKYPPSSH
Sbjct: 61  SPYKKPYKRPPYKKYPPYKKRPPYKKYPPSSH 92

[Close]

BLAST of Csa2G176690 vs. NCBI nr
Match: gi|659121395|ref|XP_008460638.1| (PREDICTED: repetitive proline-rich cell wall protein 3-like [Cucumis melo])

HSP 1 Score: 169.1 bits (427), Expect = 4.2e-39
Identity = 78/92 (84.78%), Postives = 83/92 (90.22%), Query Frame = 1


Query: 15  MFPKYFLLLLLAVVLLTTTQALKHPFNSNQERIPSTDLTHGKLPTTITDPNEESKFFRRP 74
           MF KYFLLLLLA VLL+TTQALKHP  S+QE IP+TD+T G LPTTI DPNEESKF+RRP
Sbjct: 1   MFLKYFLLLLLAAVLLSTTQALKHPSTSDQEVIPTTDVTQGTLPTTIADPNEESKFYRRP 60

Query: 75  SPYKKPYKRPPYKKYPPYKKRPPYKKYPPSSH 107
            PYKKPYKRPPYKKYPPYKKRPPYKKYPPSSH
Sbjct: 61  FPYKKPYKRPPYKKYPPYKKRPPYKKYPPSSH 92

The following BLAST results are available for this feature:

BLAST of Csa2G176690 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LNP2_CUCSA	9.1e-57	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G176690 PE=4 SV=1	[more]
A0A0A0LI79_CUCSA	2.0e-51	91.51	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G176190 PE=4 SV=1	[more]
Q8H0R6_CUCSA	2.0e-48	100.00	Proline-rich protein OS=Cucumis sativus GN=prp1 PE=2 SV=1	[more]

BLAST of Csa2G176690 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700206487\|gb\|KGN61606.1\|	1.3e-56	100.00	hypothetical protein Csa_2G176690 [Cucumis sativus]	[more]
gi\|778668784\|ref\|XP_004147144.2\|	2.8e-51	91.51	PREDICTED: repetitive proline-rich cell wall protein 3-like [Cucumis sativus]	[more]
gi\|525507184\|ref\|NP_001267631.1\|	2.9e-48	100.00	uncharacterized protein LOC101210961 precursor [Cucumis sativus]	[more]
gi\|659121395\|ref\|XP_008460638.1\|	4.2e-39	84.78	PREDICTED: repetitive proline-rich cell wall protein 3-like [Cucumis melo]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
CU121037	cucumber EST collection version 3.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa2G176690.1	Csa2G176690.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
CU121037	CU121037	transcribed_cluster

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa2G176690	Watermelon (97103) v2	cuwmbB131
Csa2G176690	Watermelon (97103) v2	cuwmbB147
Csa2G176690	Watermelon (97103) v2	cuwmbB154
Csa2G176690	Wax gourd	cuwgoB121
Csa2G176690	Wax gourd	cuwgoB143
Csa2G176690	Wax gourd	cuwgoB148
Csa2G176690	Cucumber (Chinese Long) v2	cucuB050
Csa2G176690	Cucumber (Chinese Long) v2	cucuB055
Csa2G176690	Cucumber (Gy14) v1	cgycuB362
Csa2G176690	Cucumber (Gy14) v1	cgycuB536
Csa2G176690	Cucurbita maxima (Rimu)	cmacuB238
Csa2G176690	Cucurbita maxima (Rimu)	cmacuB350
Csa2G176690	Cucurbita maxima (Rimu)	cmacuB508
Csa2G176690	Cucurbita maxima (Rimu)	cmacuB585
Csa2G176690	Cucurbita maxima (Rimu)	cmacuB813
Csa2G176690	Cucurbita maxima (Rimu)	cmacuB881
Csa2G176690	Cucurbita moschata (Rifu)	cmocuB225
Csa2G176690	Cucurbita moschata (Rifu)	cmocuB339
Csa2G176690	Cucurbita moschata (Rifu)	cmocuB497
Csa2G176690	Cucurbita moschata (Rifu)	cmocuB576
Csa2G176690	Cucurbita moschata (Rifu)	cmocuB805
Csa2G176690	Cucurbita moschata (Rifu)	cmocuB868
Csa2G176690	Melon (DHL92) v3.5.1	cumeB131
Csa2G176690	Melon (DHL92) v3.5.1	cumeB145
Csa2G176690	Watermelon (Charleston Gray)	cuwcgB136
Csa2G176690	Watermelon (Charleston Gray)	cuwcgB153
Csa2G176690	Watermelon (Charleston Gray)	cuwcgB160
Csa2G176690	Watermelon (97103) v1	cuwmB116
Csa2G176690	Watermelon (97103) v1	cuwmB122
Csa2G176690	Watermelon (97103) v1	cuwmB172
Csa2G176690	Cucurbita pepo (Zucchini)	cpecuB127
Csa2G176690	Cucurbita pepo (Zucchini)	cpecuB237
Csa2G176690	Cucurbita pepo (Zucchini)	cpecuB306
Csa2G176690	Cucurbita pepo (Zucchini)	cpecuB596
Csa2G176690	Cucurbita pepo (Zucchini)	cpecuB715
Csa2G176690	Cucurbita pepo (Zucchini)	cpecuB849
Csa2G176690	Bottle gourd (USVL1VR-Ls)	culsiB087
Csa2G176690	Bottle gourd (USVL1VR-Ls)	culsiB127
Csa2G176690	Bottle gourd (USVL1VR-Ls)	culsiB129
Csa2G176690	Cucumber (Gy14) v2	cgybcuB056
Csa2G176690	Cucumber (Gy14) v2	cgybcuB101
Csa2G176690	Melon (DHL92) v3.6.1	cumedB134
Csa2G176690	Melon (DHL92) v3.6.1	cumedB137
Csa2G176690	Silver-seed gourd	carcuB0254
Csa2G176690	Silver-seed gourd	carcuB0261
Csa2G176690	Silver-seed gourd	carcuB0766
Csa2G176690	Silver-seed gourd	carcuB0793
Csa2G176690	Silver-seed gourd	carcuB0974
Csa2G176690	Silver-seed gourd	carcuB1090