Csa2G166180 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa2G166180
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Vascular plant one zinc finger protein
Location	Chr2 : 9404367 .. 9404745 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTCATTGTGATTTCTTTTTCTCCAGTTGCTGCTAAGATAATTTTGGTGGAAGAAAAGAAACGGATCAATACCGAAGGGTTTAAAGAGTAAATGTCAATCTACTTTTTGGATTTGAGGAGTGCAAAGTGTCTCTTTTACGAAGGCCTTCCTGAAATGATTCCAATATTGCGTCCAGGGGAAATTGACCTTAAGGATGGTCCTTTGTTTGCTGCTCTTCAGGCAAAGACACAAGCCAAAGAAGTTGAAATACCCATATGTTGGAATACTCGTATGTGATGGTGGTGCAACAAGGAAATCTCCGTGAATCCTCTTGGTAAAACCTTTATGTTGCTTTGTAACTTTTTCCCATTTTCCTGATTTTATTTTTCTTTTGTTGTT

mRNA sequence

ATGTCAATCTACTTTTTGGATTTGAGGAGTGCAAAGTGTCTCTTTTACGAAGGCCTTCCTGAAATGATTCCAATATTGCGTCCAGGGGAAATTGACCTTAAGGATGGTCCTTTGTTTGCTGCTCTTCAGGCAAAGACACAAGCCAAAGAAGTTGAAATACCCATATGTTGGAATACTCGTATGTGA

Coding sequence (CDS)

ATGTCAATCTACTTTTTGGATTTGAGGAGTGCAAAGTGTCTCTTTTACGAAGGCCTTCCTGAAATGATTCCAATATTGCGTCCAGGGGAAATTGACCTTAAGGATGGTCCTTTGTTTGCTGCTCTTCAGGCAAAGACACAAGCCAAAGAAGTTGAAATACCCATATGTTGGAATACTCGTATGTGA

Protein sequence

MSIYFLDLRSAKCLFYEGLPEMIPILRPGEIDLKDGPLFAALQAKTQAKEVEIPICWNTRM*

Homology

[Close]

BLAST of Csa2G166180 vs. Swiss-Prot
Match: VOZ1_ARATH (Transcription factor VOZ1 OS=Arabidopsis thaliana GN=VOZ1 PE=1 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 2.7e-06
Identity = 27/46 (58.70%), Postives = 28/46 (60.87%), Query Frame = 1


Query: 11  AKCLFYEGLPEMIPILRPGEIDLKDGPLFAALQAKTQAKEVEIPIC 57
           A   F EG P M P++RPG I LKDG LFAAL AK   K+V IP C
Sbjct: 241 AALAFNEGPPGMNPVVRPGGIGLKDGLLFAALSAKAGGKDVGIPEC 286

[Close]

BLAST of Csa2G166180 vs. TrEMBL
Match: A0A0A0LI35_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G166180 PE=4 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 3.3e-27
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 1


Query: 1  MSIYFLDLRSAKCLFYEGLPEMIPILRPGEIDLKDGPLFAALQAKTQAKEVEIPICWNTR 60
          MSIYFLDLRSAKCLFYEGLPEMIPILRPGEIDLKDGPLFAALQAKTQAKEVEIPICWNTR
Sbjct: 1  MSIYFLDLRSAKCLFYEGLPEMIPILRPGEIDLKDGPLFAALQAKTQAKEVEIPICWNTR 60

Query: 61 M 62
          M
Sbjct: 61 M 61

[Close]

BLAST of Csa2G166180 vs. TrEMBL
Match: A0A0A0LT50_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G415530 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 1.4e-09
Identity = 34/40 (85.00%), Postives = 34/40 (85.00%), Query Frame = 1


Query: 17  EGLPEMIPILRPGEIDLKDGPLFAALQAKTQAKEVEIPIC 57
           EGLP MIPILRPG I  KDGPLFAALQ KTQAKEV IPIC
Sbjct: 269 EGLPGMIPILRPGGIGFKDGPLFAALQVKTQAKEVGIPIC 308

[Close]

BLAST of Csa2G166180 vs. TrEMBL
Match: M0SP17_MUSAM (Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 2.3e-07
Identity = 28/40 (70.00%), Postives = 32/40 (80.00%), Query Frame = 1


Query: 17  EGLPEMIPILRPGEIDLKDGPLFAALQAKTQAKEVEIPIC 57
           EG P M P+LRPG IDLKDGPLFAAL A+T+ K V IP+C
Sbjct: 370 EGPPGMTPVLRPGGIDLKDGPLFAALNARTEGKNVGIPVC 409

[Close]

BLAST of Csa2G166180 vs. TrEMBL
Match: A0A0L9V569_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan08g091400 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 2.9e-07
Identity = 30/40 (75.00%), Postives = 32/40 (80.00%), Query Frame = 1


Query: 17  EGLPEMIPILRPGEIDLKDGPLFAALQAKTQAKEVEIPIC 57
           EGLP M PILRPG I +KDGPLFAA+ AKTQ KEV IP C
Sbjct: 279 EGLPGMTPILRPGGIGVKDGPLFAAVLAKTQGKEVGIPSC 318

[Close]

BLAST of Csa2G166180 vs. TrEMBL
Match: A0A0S3SAZ7_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.06G122300 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 2.9e-07
Identity = 30/40 (75.00%), Postives = 32/40 (80.00%), Query Frame = 1


Query: 17  EGLPEMIPILRPGEIDLKDGPLFAALQAKTQAKEVEIPIC 57
           EGLP M PILRPG I +KDGPLFAA+ AKTQ KEV IP C
Sbjct: 279 EGLPGMTPILRPGGIGVKDGPLFAAVLAKTQGKEVGIPSC 318

[Close]

BLAST of Csa2G166180 vs. TAIR10
Match: AT1G28520.1 (AT1G28520.1 vascular plant one zinc finger protein)

HSP 1 Score: 52.0 bits (123), Expect = 1.5e-07
Identity = 27/46 (58.70%), Postives = 28/46 (60.87%), Query Frame = 1


Query: 11  AKCLFYEGLPEMIPILRPGEIDLKDGPLFAALQAKTQAKEVEIPIC 57
           A   F EG P M P++RPG I LKDG LFAAL AK   K+V IP C
Sbjct: 241 AALAFNEGPPGMNPVVRPGGIGLKDGLLFAALSAKAGGKDVGIPEC 286

[Close]

BLAST of Csa2G166180 vs. TAIR10
Match: AT2G42400.1 (AT2G42400.1 vascular plant one zinc finger protein 2)

HSP 1 Score: 47.4 bits (111), Expect = 3.8e-06
Identity = 23/40 (57.50%), Postives = 24/40 (60.00%), Query Frame = 1


Query: 17  EGLPEMIPILRPGEIDLKDGPLFAALQAKTQAKEVEIPIC 57
           E  P   P+LRPG I LKD  L  AL+AKTQ K V IP+C
Sbjct: 260 EDSPGTAPVLRPGGISLKDNLLIDALRAKTQGKNVGIPVC 299

[Close]

BLAST of Csa2G166180 vs. NCBI nr
Match: gi|700206421|gb|KGN61540.1| (hypothetical protein Csa_2G166180 [Cucumis sativus])

HSP 1 Score: 128.3 bits (321), Expect = 4.8e-27
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 1


Query: 1  MSIYFLDLRSAKCLFYEGLPEMIPILRPGEIDLKDGPLFAALQAKTQAKEVEIPICWNTR 60
          MSIYFLDLRSAKCLFYEGLPEMIPILRPGEIDLKDGPLFAALQAKTQAKEVEIPICWNTR
Sbjct: 1  MSIYFLDLRSAKCLFYEGLPEMIPILRPGEIDLKDGPLFAALQAKTQAKEVEIPICWNTR 60

Query: 61 M 62
          M
Sbjct: 61 M 61

[Close]

BLAST of Csa2G166180 vs. NCBI nr
Match: gi|659111849|ref|XP_008455940.1| (PREDICTED: transcription factor VOZ1-like [Cucumis melo])

HSP 1 Score: 71.2 bits (173), Expect = 7.0e-10
Identity = 35/40 (87.50%), Postives = 35/40 (87.50%), Query Frame = 1


Query: 17  EGLPEMIPILRPGEIDLKDGPLFAALQAKTQAKEVEIPIC 57
           EGLP MIPILRPG I  KDGPLFAALQAKTQAKEV IPIC
Sbjct: 269 EGLPGMIPILRPGGIGFKDGPLFAALQAKTQAKEVGIPIC 308

[Close]

BLAST of Csa2G166180 vs. NCBI nr
Match: gi|778673382|ref|XP_011649982.1| (PREDICTED: transcription factor VOZ1-like [Cucumis sativus])

HSP 1 Score: 69.7 bits (169), Expect = 2.0e-09
Identity = 34/40 (85.00%), Postives = 34/40 (85.00%), Query Frame = 1


Query: 17  EGLPEMIPILRPGEIDLKDGPLFAALQAKTQAKEVEIPIC 57
           EGLP MIPILRPG I  KDGPLFAALQ KTQAKEV IPIC
Sbjct: 269 EGLPGMIPILRPGGIGFKDGPLFAALQVKTQAKEVGIPIC 308

[Close]

BLAST of Csa2G166180 vs. NCBI nr
Match: gi|700208092|gb|KGN63211.1| (hypothetical protein Csa_2G415530 [Cucumis sativus])

HSP 1 Score: 69.7 bits (169), Expect = 2.0e-09
Identity = 34/40 (85.00%), Postives = 34/40 (85.00%), Query Frame = 1


Query: 17  EGLPEMIPILRPGEIDLKDGPLFAALQAKTQAKEVEIPIC 57
           EGLP MIPILRPG I  KDGPLFAALQ KTQAKEV IPIC
Sbjct: 269 EGLPGMIPILRPGGIGFKDGPLFAALQVKTQAKEVGIPIC 308

[Close]

BLAST of Csa2G166180 vs. NCBI nr
Match: gi|743795201|ref|XP_010924399.1| (PREDICTED: transcription factor VOZ1 isoform X2 [Elaeis guineensis])

HSP 1 Score: 63.5 bits (153), Expect = 1.5e-07
Identity = 30/40 (75.00%), Postives = 32/40 (80.00%), Query Frame = 1


Query: 17  EGLPEMIPILRPGEIDLKDGPLFAALQAKTQAKEVEIPIC 57
           EG P M P+LRPG IDLKDGPLFAAL AKTQ K V IP+C
Sbjct: 261 EGPPGMTPVLRPGGIDLKDGPLFAALCAKTQGKNVGIPVC 300

The following BLAST results are available for this feature:

BLAST of Csa2G166180 vs. Swiss-Prot


Match Name	E-value	Identity	Description
VOZ1_ARATH	2.7e-06	58.70	Transcription factor VOZ1 OS=Arabidopsis thaliana GN=VOZ1 PE=1 SV=1	[more]

BLAST of Csa2G166180 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LI35_CUCSA	3.3e-27	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G166180 PE=4 SV=1	[more]
A0A0A0LT50_CUCSA	1.4e-09	85.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G415530 PE=4 SV=1	[more]
M0SP17_MUSAM	2.3e-07	70.00	Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=4 SV=1	[more]
A0A0L9V569_PHAAN	2.9e-07	75.00	Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan08g091400 PE=4 SV=1	[more]
A0A0S3SAZ7_PHAAN	2.9e-07	75.00	Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.06G122300 PE=...	[more]

BLAST of Csa2G166180 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G28520.1	1.5e-07	58.70	vascular plant one zinc finger protein	[more]
AT2G42400.1	3.8e-06	57.50	vascular plant one zinc finger protein 2	[more]

BLAST of Csa2G166180 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700206421\|gb\|KGN61540.1\|	4.8e-27	100.00	hypothetical protein Csa_2G166180 [Cucumis sativus]	[more]
gi\|659111849\|ref\|XP_008455940.1\|	7.0e-10	87.50	PREDICTED: transcription factor VOZ1-like [Cucumis melo]	[more]
gi\|778673382\|ref\|XP_011649982.1\|	2.0e-09	85.00	PREDICTED: transcription factor VOZ1-like [Cucumis sativus]	[more]
gi\|700208092\|gb\|KGN63211.1\|	2.0e-09	85.00	hypothetical protein Csa_2G415530 [Cucumis sativus]	[more]
gi\|743795201\|ref\|XP_010924399.1\|	1.5e-07	75.00	PREDICTED: transcription factor VOZ1 isoform X2 [Elaeis guineensis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa2G166180.1	Csa2G166180.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33873	FAMILY NOT NAMED	coord: 17..56 score: 3.6
None	No IPR available	PANTHER	PTHR33873:SF4	SUBFAMILY NOT NAMED	coord: 17..56 score: 3.6

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa2G166180	Cucsa.383070	Cucumber (Gy14) v1	cgycuB536
Csa2G166180	CsGy2G009910	Cucumber (Gy14) v2	cgybcuB056

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa2G166180	Cucumber (Gy14) v2	cgybcuB101
Csa2G166180	Melon (DHL92) v3.6.1	cumedB122
Csa2G166180	Melon (DHL92) v3.6.1	cumedB134
Csa2G166180	Melon (DHL92) v3.6.1	cumedB137
Csa2G166180	Silver-seed gourd	carcuB0254
Csa2G166180	Silver-seed gourd	carcuB0261
Csa2G166180	Silver-seed gourd	carcuB0793
Csa2G166180	Silver-seed gourd	carcuB0974
Csa2G166180	Silver-seed gourd	carcuB1090
Csa2G166180	Watermelon (97103) v2	cuwmbB131
Csa2G166180	Watermelon (97103) v2	cuwmbB147
Csa2G166180	Watermelon (97103) v2	cuwmbB154
Csa2G166180	Wax gourd	cuwgoB121
Csa2G166180	Wax gourd	cuwgoB126
Csa2G166180	Wax gourd	cuwgoB148
Csa2G166180	Cucumber (Chinese Long) v2	cucuB050
Csa2G166180	Cucumber (Chinese Long) v2	cucuB060
Csa2G166180	Cucumber (Gy14) v1	cgycuB362
Csa2G166180	Cucurbita maxima (Rimu)	cmacuB238
Csa2G166180	Cucurbita maxima (Rimu)	cmacuB350
Csa2G166180	Cucurbita maxima (Rimu)	cmacuB585
Csa2G166180	Cucurbita maxima (Rimu)	cmacuB813
Csa2G166180	Cucurbita maxima (Rimu)	cmacuB881
Csa2G166180	Cucurbita moschata (Rifu)	cmocuB225
Csa2G166180	Cucurbita moschata (Rifu)	cmocuB339
Csa2G166180	Cucurbita moschata (Rifu)	cmocuB576
Csa2G166180	Cucurbita moschata (Rifu)	cmocuB805
Csa2G166180	Cucurbita moschata (Rifu)	cmocuB868
Csa2G166180	Melon (DHL92) v3.5.1	cumeB124
Csa2G166180	Melon (DHL92) v3.5.1	cumeB131
Csa2G166180	Melon (DHL92) v3.5.1	cumeB145
Csa2G166180	Watermelon (Charleston Gray)	cuwcgB136
Csa2G166180	Watermelon (Charleston Gray)	cuwcgB153
Csa2G166180	Watermelon (Charleston Gray)	cuwcgB160
Csa2G166180	Watermelon (97103) v1	cuwmB116
Csa2G166180	Watermelon (97103) v1	cuwmB122
Csa2G166180	Watermelon (97103) v1	cuwmB172
Csa2G166180	Cucurbita pepo (Zucchini)	cpecuB127
Csa2G166180	Cucurbita pepo (Zucchini)	cpecuB306
Csa2G166180	Cucurbita pepo (Zucchini)	cpecuB596
Csa2G166180	Cucurbita pepo (Zucchini)	cpecuB715
Csa2G166180	Cucurbita pepo (Zucchini)	cpecuB849
Csa2G166180	Bottle gourd (USVL1VR-Ls)	culsiB087
Csa2G166180	Bottle gourd (USVL1VR-Ls)	culsiB127
Csa2G166180	Bottle gourd (USVL1VR-Ls)	culsiB129