Csa2G160600 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa2G160600
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr2 : 9218439 .. 9218708 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATATCCCGTTGCTTATGCGTGAAGCCATTTAAAAACCAAAAATAAATAATAACGAAAATGGAATGAGTGTGGGGCCGCCTTGAAGTAACCGAGCCAATGAAAACGGAGAGATTGAAAAGGGTTGGCACATAGGGACCCAGAGAAATCAAAAGGTCGGAGAGAAGGTAGGGGATGATGATGTTTGTGTGGAGCTTTTAGTAGAGGATGATGAGGGTAAAATTGTAAATGAAGGTGTGGTTAAATGGGATTTTATAAGGGAGGCGTGA

mRNA sequence

ATGGATATCCCTAACCGAGCCAATGAAAACGGAGAGATTGAAAAGGGTTGGCACATAGGGACCCAGAGAAATCAAAAGGTCGGAGAGAAGGTAGGGGATGATGATGTTTGTGTGGAGCTTTTAGTAGAGGATGATGAGGGTAAAATTGTAAATGAAGGTGTGGTTAAATGGGATTTTATAAGGGAGGCGTGA

Coding sequence (CDS)

ATGGATATCCCTAACCGAGCCAATGAAAACGGAGAGATTGAAAAGGGTTGGCACATAGGGACCCAGAGAAATCAAAAGGTCGGAGAGAAGGTAGGGGATGATGATGTTTGTGTGGAGCTTTTAGTAGAGGATGATGAGGGTAAAATTGTAAATGAAGGTGTGGTTAAATGGGATTTTATAAGGGAGGCGTGA

Protein sequence

MDIPNRANENGEIEKGWHIGTQRNQKVGEKVGDDDVCVELLVEDDEGKIVNEGVVKWDFIREA*
Homology
[Close]
BLAST of Csa2G160600 vs. TrEMBL
Match: A0A0A0LNJ2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G160600 PE=4 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 2.8e-29
Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 1 

Query: 1  MDIPNRANENGEIEKGWHIGTQRNQKVGEKVGDDDVCVELLVEDDEGKIVNEGVVKWDFI 60
          MDIPNRANENGEIEKGWHIGTQRNQKVGEKVGDDDVCVELLVEDDEGKIVNEGVVKWDFI
Sbjct: 1  MDIPNRANENGEIEKGWHIGTQRNQKVGEKVGDDDVCVELLVEDDEGKIVNEGVVKWDFI 60

Query: 61 REA 64
          REA
Sbjct: 61 REA 63

[Close]
BLAST of Csa2G160600 vs. NCBI nr
Match: gi|700206407|gb|KGN61526.1| (hypothetical protein Csa_2G160600 [Cucumis sativus])

HSP 1 Score: 135.2 bits (339), Expect = 4.1e-29
Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 1 

Query: 1  MDIPNRANENGEIEKGWHIGTQRNQKVGEKVGDDDVCVELLVEDDEGKIVNEGVVKWDFI 60
          MDIPNRANENGEIEKGWHIGTQRNQKVGEKVGDDDVCVELLVEDDEGKIVNEGVVKWDFI
Sbjct: 1  MDIPNRANENGEIEKGWHIGTQRNQKVGEKVGDDDVCVELLVEDDEGKIVNEGVVKWDFI 60

Query: 61 REA 64
          REA
Sbjct: 61 REA 63

The following BLAST results are available for this feature:
BLAST of Csa2G160600 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LNJ2_CUCSA2.8e-29100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_2G160600 PE=4 SV=1[more]
BLAST of Csa2G160600 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700206407|gb|KGN61526.1|4.1e-29100.00hypothetical protein Csa_2G160600 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa2G160600.1Csa2G160600.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa2G160600CsGy2G009790Cucumber (Gy14) v2cgybcuB056
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa2G160600Cucurbita moschata (Rifu)cmocuB225
Csa2G160600Cucurbita moschata (Rifu)cmocuB576
Csa2G160600Cucurbita moschata (Rifu)cmocuB805
Csa2G160600Cucurbita moschata (Rifu)cmocuB868
Csa2G160600Melon (DHL92) v3.5.1cumeB131
Csa2G160600Melon (DHL92) v3.5.1cumeB145
Csa2G160600Watermelon (Charleston Gray)cuwcgB136
Csa2G160600Watermelon (Charleston Gray)cuwcgB153
Csa2G160600Watermelon (Charleston Gray)cuwcgB160
Csa2G160600Watermelon (97103) v1cuwmB122
Csa2G160600Watermelon (97103) v1cuwmB172
Csa2G160600Cucurbita pepo (Zucchini)cpecuB306
Csa2G160600Cucurbita pepo (Zucchini)cpecuB715
Csa2G160600Cucurbita pepo (Zucchini)cpecuB849
Csa2G160600Bottle gourd (USVL1VR-Ls)culsiB127
Csa2G160600Cucumber (Gy14) v2cgybcuB101
Csa2G160600Melon (DHL92) v3.6.1cumedB134
Csa2G160600Melon (DHL92) v3.6.1cumedB137
Csa2G160600Silver-seed gourdcarcuB0261
Csa2G160600Silver-seed gourdcarcuB0974
Csa2G160600Silver-seed gourdcarcuB1090
Csa2G160600Watermelon (97103) v2cuwmbB131
Csa2G160600Watermelon (97103) v2cuwmbB147
Csa2G160600Watermelon (97103) v2cuwmbB154
Csa2G160600Wax gourdcuwgoB121
Csa2G160600Cucumber (Chinese Long) v2cucuB050
Csa2G160600Cucumber (Chinese Long) v2cucuB060
Csa2G160600Cucumber (Gy14) v1cgycuB296
Csa2G160600Cucumber (Gy14) v1cgycuB362
Csa2G160600Cucurbita maxima (Rimu)cmacuB238
Csa2G160600Cucurbita maxima (Rimu)cmacuB585
Csa2G160600Cucurbita maxima (Rimu)cmacuB813
Csa2G160600Cucurbita maxima (Rimu)cmacuB881