Csa2G151060 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa2G151060
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionPutative retroelement pol polyprotein
LocationChr2 : 9058452 .. 9058736 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAAAACCCACCCTTCATCCCAATTCCTCTTCATCCATCAACCAGACGACGAATTTCTCCACCATCGAGCAATATTCCAATCCCTACTTTCTACACCATTCAAACAACACGAGTATCGTTCTCGTATCCAACCTCCTTACTGAAACAAATTATGCCTCTTGGAGTCAAGCGATGAAAATCAGATTAATCGGGAAGAACAAACTTGGCTTCACCGATGACAGTATCACACGTCCCAAAACTTGGCTTCACCTAAGTGACACTTTAACTCTCAAGACAAGTTAA

mRNA sequence

ATGGCAAAACCCACCCTTCATCCCAATTCCTCTTCATCCATCAACCAGACGACGAATTTCTCCACCATCGAGCAATATTCCAATCCCTACTTTCTACACCATTCAAACAACACGAGTATCGTTCTCGTATCCAACCTCCTTACTGAAACAAATTATGCCTCTTGGAGTCAAGCGATGAAAATCAGATTAATCGGGAAGAACAAACTTGGCTTCACCGATGACAGTATCACACGTCCCAAAACTTGGCTTCACCTAAGTGACACTTTAACTCTCAAGACAAGTTAA

Coding sequence (CDS)

ATGGCAAAACCCACCCTTCATCCCAATTCCTCTTCATCCATCAACCAGACGACGAATTTCTCCACCATCGAGCAATATTCCAATCCCTACTTTCTACACCATTCAAACAACACGAGTATCGTTCTCGTATCCAACCTCCTTACTGAAACAAATTATGCCTCTTGGAGTCAAGCGATGAAAATCAGATTAATCGGGAAGAACAAACTTGGCTTCACCGATGACAGTATCACACGTCCCAAAACTTGGCTTCACCTAAGTGACACTTTAACTCTCAAGACAAGTTAA

Protein sequence

MAKPTLHPNSSSSINQTTNFSTIEQYSNPYFLHHSNNTSIVLVSNLLTETNYASWSQAMKIRLIGKNKLGFTDDSITRPKTWLHLSDTLTLKTS*
Homology
[Close]
BLAST of Csa2G151060 vs. TrEMBL
Match: A0A0A0LI19_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G151060 PE=4 SV=1)

HSP 1 Score: 193.0 bits (489), Expect = 1.7e-46
Identity = 94/94 (100.00%), Postives = 94/94 (100.00%), Query Frame = 1 

Query: 1  MAKPTLHPNSSSSINQTTNFSTIEQYSNPYFLHHSNNTSIVLVSNLLTETNYASWSQAMK 60
          MAKPTLHPNSSSSINQTTNFSTIEQYSNPYFLHHSNNTSIVLVSNLLTETNYASWSQAMK
Sbjct: 1  MAKPTLHPNSSSSINQTTNFSTIEQYSNPYFLHHSNNTSIVLVSNLLTETNYASWSQAMK 60

Query: 61 IRLIGKNKLGFTDDSITRPKTWLHLSDTLTLKTS 95
          IRLIGKNKLGFTDDSITRPKTWLHLSDTLTLKTS
Sbjct: 61 IRLIGKNKLGFTDDSITRPKTWLHLSDTLTLKTS 94

[Close]
BLAST of Csa2G151060 vs. TrEMBL
Match: A0A151R855_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_040198 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 7.4e-10
Identity = 33/56 (58.93%), Postives = 42/56 (75.00%), Query Frame = 1 

Query: 24 EQYSNPYFLHHSNNTSIVLVSNLLTETNYASWSQAMKIRLIGKNKLGFTDDSITRP 80
          ++YSNP FLH S+N S ++VS  LTE+N+ SWS AM++ L GKNKLGF D SI  P
Sbjct: 3  DEYSNPLFLHPSDNPSSIVVSQPLTESNWRSWSNAMRMTLKGKNKLGFIDGSILEP 58

[Close]
BLAST of Csa2G151060 vs. TrEMBL
Match: A0A151QT53_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_045698 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 1.7e-09
Identity = 32/59 (54.24%), Postives = 45/59 (76.27%), Query Frame = 1 

Query: 21 STIEQYSNPYFLHHSNNTSIVLVSNLLTETNYASWSQAMKIRLIGKNKLGFTDDSITRP 80
          +T ++Y++P FLH S+N S V+VS  LTE+N+ SWS AM++ L GKNKLGF D S+ +P
Sbjct: 5  TTKDEYADPLFLHPSDNPSSVVVSQPLTESNWRSWSNAMRMALEGKNKLGFIDGSVPKP 63

[Close]
BLAST of Csa2G151060 vs. TrEMBL
Match: A5C6P3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_018454 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 4.1e-08
Identity = 29/57 (50.88%), Postives = 41/57 (71.93%), Query Frame = 1 

Query: 23 IEQYSNPYFLHHSNNTSIVLVSNLLTETNYASWSQAMKIRLIGKNKLGFTDDSITRP 80
          +E  S+PYFLH+ ++  + LVSNLLT  NY +W +AM + L  KNK+GF D +I+RP
Sbjct: 22 VEDSSSPYFLHNGDHPGLNLVSNLLTGANYHTWRRAMLMALTAKNKVGFVDGTISRP 78

[Close]
BLAST of Csa2G151060 vs. TrEMBL
Match: A0A0B2QT14_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_026755 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 5.3e-08
Identity = 30/71 (42.25%), Postives = 47/71 (66.20%), Query Frame = 1 

Query: 9  NSSSSINQTTNFSTIEQYSNPYFLHHSNNTSIVLVSNLLTETNYASWSQAMKIRLIGKNK 68
          +S+ S+  T+  S+I+ +SNPYF+H + N S  +V+ +L  +NY  W+QAM +    KNK
Sbjct: 8  SSTPSLAVTSTVSSIQDFSNPYFIHSNENPSSKIVTAMLDGSNYHDWAQAMTMVFEMKNK 67

Query: 69 LGFTDDSITRP 80
          LGF D +I +P
Sbjct: 68 LGFIDGTIQKP 78

[Close]
BLAST of Csa2G151060 vs. NCBI nr
Match: gi|700206396|gb|KGN61515.1| (hypothetical protein Csa_2G151060 [Cucumis sativus])

HSP 1 Score: 193.0 bits (489), Expect = 2.4e-46
Identity = 94/94 (100.00%), Postives = 94/94 (100.00%), Query Frame = 1 

Query: 1  MAKPTLHPNSSSSINQTTNFSTIEQYSNPYFLHHSNNTSIVLVSNLLTETNYASWSQAMK 60
          MAKPTLHPNSSSSINQTTNFSTIEQYSNPYFLHHSNNTSIVLVSNLLTETNYASWSQAMK
Sbjct: 1  MAKPTLHPNSSSSINQTTNFSTIEQYSNPYFLHHSNNTSIVLVSNLLTETNYASWSQAMK 60

Query: 61 IRLIGKNKLGFTDDSITRPKTWLHLSDTLTLKTS 95
          IRLIGKNKLGFTDDSITRPKTWLHLSDTLTLKTS
Sbjct: 61 IRLIGKNKLGFTDDSITRPKTWLHLSDTLTLKTS 94

[Close]
BLAST of Csa2G151060 vs. NCBI nr
Match: gi|778668587|ref|XP_011649121.1| (PREDICTED: uncharacterized protein LOC105434586 [Cucumis sativus])

HSP 1 Score: 82.4 bits (202), Expect = 4.6e-13
Identity = 40/74 (54.05%), Postives = 53/74 (71.62%), Query Frame = 1 

Query: 7  HPNSSSS-INQTTNFSTIEQYSNPYFLHHSNNTSIVLVSNLLTETNYASWSQAMKIRLIG 66
          +PNS+ S  +  T+F   + Y NPYFLHH++NT++VLV+  LTE NY SWS+AM I L  
Sbjct: 18 NPNSNQSDTSAQTSFDQNQGYLNPYFLHHNDNTNLVLVTEQLTEENYVSWSRAMTIGLSV 77

Query: 67 KNKLGFTDDSITRP 80
          KNK+GF D +I RP
Sbjct: 78 KNKIGFVDGTIARP 91

[Close]
BLAST of Csa2G151060 vs. NCBI nr
Match: gi|778697558|ref|XP_011654348.1| (PREDICTED: uncharacterized protein LOC105435350 [Cucumis sativus])

HSP 1 Score: 80.1 bits (196), Expect = 2.3e-12
Identity = 39/84 (46.43%), Postives = 57/84 (67.86%), Query Frame = 1 

Query: 2  AKPTLHPNSSSSINQTTNFST--------IEQYSNPYFLHHSNNTSIVLVSNLLTETNYA 61
          + P L P+SSS +  +++           I QY NPYFLH+SNNT++V+VS+LLTE+NY 
Sbjct: 4  SNPILQPSSSSILEYSSSTVNPTPIPPFVIAQYENPYFLHNSNNTNLVIVSDLLTESNYT 63

Query: 62 SWSQAMKIRLIGKNKLGFTDDSIT 78
          SW++A  + L  KNK+GF D ++T
Sbjct: 64 SWNRAFLLGLTVKNKVGFVDGTLT 87

[Close]
BLAST of Csa2G151060 vs. NCBI nr
Match: gi|719982241|ref|XP_010250376.1| (PREDICTED: uncharacterized protein LOC104592635 [Nelumbo nucifera])

HSP 1 Score: 72.4 bits (176), Expect = 4.8e-10
Identity = 32/58 (55.17%), Postives = 43/58 (74.14%), Query Frame = 1 

Query: 22 TIEQYSNPYFLHHSNNTSIVLVSNLLTETNYASWSQAMKIRLIGKNKLGFTDDSITRP 80
          T +   +PY+LHH +N  ++LV+N+LT  NYASWS+AMK+ L  KNKLGF D SI +P
Sbjct: 30 TTDDPRSPYYLHHFDNPGMILVTNVLTGENYASWSRAMKMALSAKNKLGFVDGSIEKP 87

[Close]
BLAST of Csa2G151060 vs. NCBI nr
Match: gi|848904241|ref|XP_012851790.1| (PREDICTED: uncharacterized protein LOC105971482 [Erythranthe guttata])

HSP 1 Score: 72.0 bits (175), Expect = 6.3e-10
Identity = 34/59 (57.63%), Postives = 43/59 (72.88%), Query Frame = 1 

Query: 21 STIEQYSNPYFLHHSNNTSIVLVSNLLTETNYASWSQAMKIRLIGKNKLGFTDDSITRP 80
          S ++  S+P FLH SN  +++LVS LLTE NYASWS+AM I LI KNK+GF D +I  P
Sbjct: 7  SPLDDVSHPMFLHSSNGPNLILVSQLLTEDNYASWSRAMTISLIVKNKIGFIDGTIFEP 65

The following BLAST results are available for this feature:
BLAST of Csa2G151060 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LI19_CUCSA1.7e-46100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_2G151060 PE=4 SV=1[more]
A0A151R855_CAJCA7.4e-1058.93Uncharacterized protein OS=Cajanus cajan GN=KK1_040198 PE=4 SV=1[more]
A0A151QT53_CAJCA1.7e-0954.24Uncharacterized protein OS=Cajanus cajan GN=KK1_045698 PE=4 SV=1[more]
A5C6P3_VITVI4.1e-0850.88Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_018454 PE=4 SV=1[more]
A0A0B2QT14_GLYSO5.3e-0842.25Uncharacterized protein OS=Glycine soja GN=glysoja_026755 PE=4 SV=1[more]
BLAST of Csa2G151060 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700206396|gb|KGN61515.1|2.4e-46100.00hypothetical protein Csa_2G151060 [Cucumis sativus][more]
gi|778668587|ref|XP_011649121.1|4.6e-1354.05PREDICTED: uncharacterized protein LOC105434586 [Cucumis sativus][more]
gi|778697558|ref|XP_011654348.1|2.3e-1246.43PREDICTED: uncharacterized protein LOC105435350 [Cucumis sativus][more]
gi|719982241|ref|XP_010250376.1|4.8e-1055.17PREDICTED: uncharacterized protein LOC104592635 [Nelumbo nucifera][more]
gi|848904241|ref|XP_012851790.1|6.3e-1057.63PREDICTED: uncharacterized protein LOC105971482 [Erythranthe guttata][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa2G151060.1Csa2G151060.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa2G151060Cucumber (Gy14) v1cgycuB296
Csa2G151060Melon (DHL92) v3.5.1cumeB134
Csa2G151060Watermelon (Charleston Gray)cuwcgB158
Csa2G151060Cucumber (Gy14) v2cgybcuB056
Csa2G151060Melon (DHL92) v3.6.1cumedB127