Csa2G136680 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa2G136680
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr2 : 8465595 .. 8465969 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCATTCAAGAAAAGCAAGAGACAAACTGTGGCTAATCGACAAGCAGCAGCGTACACGAAGATCAACTTCCGACGGCCAAGAGTGGTGGACAATTTTTAGTCGACATACAGTGGCTAATCGAAAAAGGGATGAAGTACCACGTAGATCGGCAAGCAACTTTGATCACCTACGACGAGAGCTAGTGGTAATGCGTTTGGCTGGTCAGCACTCAGTCACAGTAGTCATCGACGTTGGCAGTAGAAAGATAGAGAGATATTGCAACGTAAGGAGAGGGCATCAGAGAGATTTCGAGAAGAGGGGGATGCTAGGCTTCCACGAAGAAGACTTCTCCAATTCCCTCTCTTTTTTTCTTCTTTTCATTAATTTAAAATAA

mRNA sequence

ATGCATTCAAGAAAAGCAAGAGACAAACTGTGGCTAATCGACAAGCAGCAGCGTACACGAAGATCAACTTCCGACGGCCAAGAGTGGTGGACAATTTTTAGTCGACATACAGTGGCTAATCGAAAAAGGGATGAAGTACCACGTAGATCGGCAAGCAACTTTGATCACCTACGACGAGAGCTAGTGGTAATGCGTTTGGCTGGTCAGCACTCAGTCACAGTAGTCATCGACGTTGGCAGTAGAAAGATAGAGAGATATTGCAACGTAAGGAGAGGGCATCAGAGAGATTTCGAGAAGAGGGGGATGCTAGGCTTCCACGAAGAAGACTTCTCCAATTCCCTCTCTTTTTTTCTTCTTTTCATTAATTTAAAATAA

Coding sequence (CDS)

ATGCATTCAAGAAAAGCAAGAGACAAACTGTGGCTAATCGACAAGCAGCAGCGTACACGAAGATCAACTTCCGACGGCCAAGAGTGGTGGACAATTTTTAGTCGACATACAGTGGCTAATCGAAAAAGGGATGAAGTACCACGTAGATCGGCAAGCAACTTTGATCACCTACGACGAGAGCTAGTGGTAATGCGTTTGGCTGGTCAGCACTCAGTCACAGTAGTCATCGACGTTGGCAGTAGAAAGATAGAGAGATATTGCAACGTAAGGAGAGGGCATCAGAGAGATTTCGAGAAGAGGGGGATGCTAGGCTTCCACGAAGAAGACTTCTCCAATTCCCTCTCTTTTTTTCTTCTTTTCATTAATTTAAAATAA

Protein sequence

MHSRKARDKLWLIDKQQRTRRSTSDGQEWWTIFSRHTVANRKRDEVPRRSASNFDHLRRELVVMRLAGQHSVTVVIDVGSRKIERYCNVRRGHQRDFEKRGMLGFHEEDFSNSLSFFLLFINLK*

Homology

[Close]

BLAST of Csa2G136680 vs. TrEMBL
Match: A0A0A0LL48_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G136680 PE=4 SV=1)

HSP 1 Score: 255.8 bits (652), Expect = 2.8e-65
Identity = 124/124 (100.00%), Postives = 124/124 (100.00%), Query Frame = 1


Query: 1   MHSRKARDKLWLIDKQQRTRRSTSDGQEWWTIFSRHTVANRKRDEVPRRSASNFDHLRRE 60
           MHSRKARDKLWLIDKQQRTRRSTSDGQEWWTIFSRHTVANRKRDEVPRRSASNFDHLRRE
Sbjct: 1   MHSRKARDKLWLIDKQQRTRRSTSDGQEWWTIFSRHTVANRKRDEVPRRSASNFDHLRRE 60

Query: 61  LVVMRLAGQHSVTVVIDVGSRKIERYCNVRRGHQRDFEKRGMLGFHEEDFSNSLSFFLLF 120
           LVVMRLAGQHSVTVVIDVGSRKIERYCNVRRGHQRDFEKRGMLGFHEEDFSNSLSFFLLF
Sbjct: 61  LVVMRLAGQHSVTVVIDVGSRKIERYCNVRRGHQRDFEKRGMLGFHEEDFSNSLSFFLLF 120

Query: 121 INLK 125
           INLK
Sbjct: 121 INLK 124

[Close]

BLAST of Csa2G136680 vs. NCBI nr
Match: gi|700206343|gb|KGN61462.1| (hypothetical protein Csa_2G136680 [Cucumis sativus])

HSP 1 Score: 255.8 bits (652), Expect = 4.0e-65
Identity = 124/124 (100.00%), Postives = 124/124 (100.00%), Query Frame = 1


Query: 1   MHSRKARDKLWLIDKQQRTRRSTSDGQEWWTIFSRHTVANRKRDEVPRRSASNFDHLRRE 60
           MHSRKARDKLWLIDKQQRTRRSTSDGQEWWTIFSRHTVANRKRDEVPRRSASNFDHLRRE
Sbjct: 1   MHSRKARDKLWLIDKQQRTRRSTSDGQEWWTIFSRHTVANRKRDEVPRRSASNFDHLRRE 60

Query: 61  LVVMRLAGQHSVTVVIDVGSRKIERYCNVRRGHQRDFEKRGMLGFHEEDFSNSLSFFLLF 120
           LVVMRLAGQHSVTVVIDVGSRKIERYCNVRRGHQRDFEKRGMLGFHEEDFSNSLSFFLLF
Sbjct: 61  LVVMRLAGQHSVTVVIDVGSRKIERYCNVRRGHQRDFEKRGMLGFHEEDFSNSLSFFLLF 120

Query: 121 INLK 125
           INLK
Sbjct: 121 INLK 124

The following BLAST results are available for this feature:

BLAST of Csa2G136680 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LL48_CUCSA	2.8e-65	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G136680 PE=4 SV=1	[more]

BLAST of Csa2G136680 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700206343\|gb\|KGN61462.1\|	4.0e-65	100.00	hypothetical protein Csa_2G136680 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR007295	Domain of unknown function DUF402

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa2G136680.1	Csa2G136680.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007295	Domain of unknown function DUF402	GENE3D	G3DSA:2.40.380.10		coord: 10..96 score: 3.

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa2G136680	Watermelon (97103) v1	cuwmB131
Csa2G136680	Watermelon (97103) v1	cuwmB167
Csa2G136680	Cucurbita pepo (Zucchini)	cpecuB131
Csa2G136680	Cucurbita pepo (Zucchini)	cpecuB305
Csa2G136680	Bottle gourd (USVL1VR-Ls)	culsiB090
Csa2G136680	Cucumber (Gy14) v2	cgybcuB056
Csa2G136680	Melon (DHL92) v3.6.1	cumedB127
Csa2G136680	Melon (DHL92) v3.6.1	cumedB140
Csa2G136680	Silver-seed gourd	carcuB0253
Csa2G136680	Silver-seed gourd	carcuB1089
Csa2G136680	Watermelon (97103) v2	cuwmbB141
Csa2G136680	Wax gourd	cuwgoB125
Csa2G136680	Cucumber (Gy14) v1	cgycuB361
Csa2G136680	Cucumber (Gy14) v1	cgycuB382
Csa2G136680	Cucurbita maxima (Rimu)	cmacuB237
Csa2G136680	Cucurbita maxima (Rimu)	cmacuB354
Csa2G136680	Cucurbita maxima (Rimu)	cmacuB884
Csa2G136680	Cucurbita moschata (Rifu)	cmocuB224
Csa2G136680	Cucurbita moschata (Rifu)	cmocuB344
Csa2G136680	Cucurbita moschata (Rifu)	cmocuB871
Csa2G136680	Melon (DHL92) v3.5.1	cumeB134
Csa2G136680	Melon (DHL92) v3.5.1	cumeB148
Csa2G136680	Watermelon (Charleston Gray)	cuwcgB145
Csa2G136680	Watermelon (Charleston Gray)	cuwcgB147