Csa2G118290 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa2G118290
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr2 : 7894729 .. 7894932 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGCTCCTCCGTCTTCGATCACCTAATTCCATTATTTCCTCTCAACGAACTCCTCCATCCTTACTGTCTTCACCATTACAGTACATCTTCTTCTTCTTCCTTTTACATGCATTTGTTGTTGCACTTCATCCTGCTTACTGGTTATCTCACGAATGGAACAAAATCCCAAGATCGTCAAGTGACGGTTAATCGAAAACTGTAG

mRNA sequence

ATGAGCTCCTCCGTCTTCGATCACCTAATTCCATTATTTCCTCTCAACGAACTCCTCCATCCTTACTGTCTTCACCATTACAGTACATCTTCTTCTTCTTCCTTTTACATGCATTTGTTGTTGCACTTCATCCTGCTTACTGGTTATCTCACGAATGGAACAAAATCCCAAGATCGTCAAGTGACGGTTAATCGAAAACTGTAG

Coding sequence (CDS)

ATGAGCTCCTCCGTCTTCGATCACCTAATTCCATTATTTCCTCTCAACGAACTCCTCCATCCTTACTGTCTTCACCATTACAGTACATCTTCTTCTTCTTCCTTTTACATGCATTTGTTGTTGCACTTCATCCTGCTTACTGGTTATCTCACGAATGGAACAAAATCCCAAGATCGTCAAGTGACGGTTAATCGAAAACTGTAG

Protein sequence

MSSSVFDHLIPLFPLNELLHPYCLHHYSTSSSSSFYMHLLLHFILLTGYLTNGTKSQDRQVTVNRKL*
Homology
[Close]
BLAST of Csa2G118290 vs. TrEMBL
Match: A0A0A0LN60_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G118290 PE=4 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 5.5e-31
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 1 

Query: 1  MSSSVFDHLIPLFPLNELLHPYCLHHYSTSSSSSFYMHLLLHFILLTGYLTNGTKSQDRQ 60
          MSSSVFDHLIPLFPLNELLHPYCLHHYSTSSSSSFYMHLLLHFILLTGYLTNGTKSQDRQ
Sbjct: 1  MSSSVFDHLIPLFPLNELLHPYCLHHYSTSSSSSFYMHLLLHFILLTGYLTNGTKSQDRQ 60

Query: 61 VTVNRKL 68
          VTVNRKL
Sbjct: 61 VTVNRKL 67

[Close]
BLAST of Csa2G118290 vs. NCBI nr
Match: gi|700206287|gb|KGN61406.1| (hypothetical protein Csa_2G118290 [Cucumis sativus])

HSP 1 Score: 141.0 bits (354), Expect = 7.8e-31
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 1 

Query: 1  MSSSVFDHLIPLFPLNELLHPYCLHHYSTSSSSSFYMHLLLHFILLTGYLTNGTKSQDRQ 60
          MSSSVFDHLIPLFPLNELLHPYCLHHYSTSSSSSFYMHLLLHFILLTGYLTNGTKSQDRQ
Sbjct: 1  MSSSVFDHLIPLFPLNELLHPYCLHHYSTSSSSSFYMHLLLHFILLTGYLTNGTKSQDRQ 60

Query: 61 VTVNRKL 68
          VTVNRKL
Sbjct: 61 VTVNRKL 67

The following BLAST results are available for this feature:
BLAST of Csa2G118290 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LN60_CUCSA5.5e-31100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_2G118290 PE=4 SV=1[more]
BLAST of Csa2G118290 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700206287|gb|KGN61406.1|7.8e-31100.00hypothetical protein Csa_2G118290 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa2G118290.1Csa2G118290.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa2G118290CSPI02G08580Wild cucumber (PI 183967)cpicuB065
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa2G118290Melon (DHL92) v3.6.1cumedB126
Csa2G118290Silver-seed gourdcarcuB0255
Csa2G118290Silver-seed gourdcarcuB1088
Csa2G118290Watermelon (97103) v2cuwmbB148
Csa2G118290Wax gourdcuwgoB122
Csa2G118290Cucumber (Gy14) v1cgycuB382
Csa2G118290Cucurbita maxima (Rimu)cmacuB351
Csa2G118290Cucurbita maxima (Rimu)cmacuB883
Csa2G118290Cucurbita moschata (Rifu)cmocuB340
Csa2G118290Cucurbita moschata (Rifu)cmocuB870
Csa2G118290Melon (DHL92) v3.5.1cumeB135
Csa2G118290Watermelon (Charleston Gray)cuwcgB154
Csa2G118290Watermelon (97103) v1cuwmB173
Csa2G118290Cucurbita pepo (Zucchini)cpecuB128
Csa2G118290Cucurbita pepo (Zucchini)cpecuB304
Csa2G118290Bottle gourd (USVL1VR-Ls)culsiB088
Csa2G118290Cucumber (Gy14) v2cgybcuB056