Csa2G100570 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa2G100570
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein; contains IPR005162 (Retrotransposon gag protein)
LocationChr2 : 7542933 .. 7543406 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTAACAAGAATAAAGTCCTTCTAAACAATGTTGCCCCTGGACAAGAAATCTTCGCCCTAATAGTCCATGACCTAAATAGACCCATTAAGGTTTATGCTTCACCAAACTTATATGACTTTGACTCTAGTATCGTCTATCATGTATTTGGTGAAAATGCACAATTTGAGATTAAGCTAGTCAGATAACAGATCCAGAACACTGGCCAATTTGATGGATACCCAGGCAAAGACCCGACGAGTACATCAAAAGCTTCTACTCTATATGTGATTAATTTCACATACCAGGCAAATCGCAAGAACAACTTTACCCTCTTTCCATTGACTATGAGGGATGAGGCAAAGATATGGGCTAACTCCTTGGAAACTAGAGAGGTGAGAACTTGGGAACAACTGATTGAGAAATTTATGAAAAAGTTCTTCCAACTTCACGAGAATTCAAGGCGAATGAGGGACATCATGAACTTCCAATAG

mRNA sequence

ATGTCTAACAAGAATAAAGTCCTTCTAAACAATGTTGCCCCTGGACAAGAAATCTTCGCCCTAATAGTCCATGACCTAAATAGACCCATTAAGATCCAGAACACTGGCCAATTTGATGGATACCCAGGCAAAGACCCGACGAGTACATCAAAAGCTTCTACTCTATATGTGATTAATTTCACATACCAGGCAAATCGCAAGAACAACTTTACCCTCTTTCCATTGACTATGAGGGATGAGGCAAAGATATGGGCTAACTCCTTGGAAACTAGAGAGGTGAGAACTTGGGAACAACTGATTGAGAAATTTATGAAAAAGTTCTTCCAACTTCACGAGAATTCAAGGCGAATGAGGGACATCATGAACTTCCAATAG

Coding sequence (CDS)

ATGTCTAACAAGAATAAAGTCCTTCTAAACAATGTTGCCCCTGGACAAGAAATCTTCGCCCTAATAGTCCATGACCTAAATAGACCCATTAAGATCCAGAACACTGGCCAATTTGATGGATACCCAGGCAAAGACCCGACGAGTACATCAAAAGCTTCTACTCTATATGTGATTAATTTCACATACCAGGCAAATCGCAAGAACAACTTTACCCTCTTTCCATTGACTATGAGGGATGAGGCAAAGATATGGGCTAACTCCTTGGAAACTAGAGAGGTGAGAACTTGGGAACAACTGATTGAGAAATTTATGAAAAAGTTCTTCCAACTTCACGAGAATTCAAGGCGAATGAGGGACATCATGAACTTCCAATAG

Protein sequence

MSNKNKVLLNNVAPGQEIFALIVHDLNRPIKIQNTGQFDGYPGKDPTSTSKASTLYVINFTYQANRKNNFTLFPLTMRDEAKIWANSLETREVRTWEQLIEKFMKKFFQLHENSRRMRDIMNFQ*
Homology
[Close]
BLAST of Csa2G100570 vs. TrEMBL
Match: A0A0A0LHG4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G100570 PE=4 SV=1)

HSP 1 Score: 255.0 bits (650), Expect = 4.8e-65
Identity = 124/124 (100.00%), Postives = 124/124 (100.00%), Query Frame = 1 

Query: 1   MSNKNKVLLNNVAPGQEIFALIVHDLNRPIKIQNTGQFDGYPGKDPTSTSKASTLYVINF 60
           MSNKNKVLLNNVAPGQEIFALIVHDLNRPIKIQNTGQFDGYPGKDPTSTSKASTLYVINF
Sbjct: 1   MSNKNKVLLNNVAPGQEIFALIVHDLNRPIKIQNTGQFDGYPGKDPTSTSKASTLYVINF 60

Query: 61  TYQANRKNNFTLFPLTMRDEAKIWANSLETREVRTWEQLIEKFMKKFFQLHENSRRMRDI 120
           TYQANRKNNFTLFPLTMRDEAKIWANSLETREVRTWEQLIEKFMKKFFQLHENSRRMRDI
Sbjct: 61  TYQANRKNNFTLFPLTMRDEAKIWANSLETREVRTWEQLIEKFMKKFFQLHENSRRMRDI 120

Query: 121 MNFQ 125
           MNFQ
Sbjct: 121 MNFQ 124

[Close]
BLAST of Csa2G100570 vs. TrEMBL
Match: A5C7P4_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_024470 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 7.0e-08
Identity = 28/52 (53.85%), Postives = 36/52 (69.23%), Query Frame = 1 

Query: 72  LFPLTMRDEAKIWANSLETREVRTWEQLIEKFMKKFFQLHENSRRMRDIMNF 124
           LFP T++D+AKIW NSL TR +RTW  L  +F+KKFF  H+ +   R I NF
Sbjct: 642 LFPFTLKDKAKIWLNSLRTRSIRTWTDLQAEFLKKFFPTHKTNGLKRQISNF 693

[Close]
BLAST of Csa2G100570 vs. TrEMBL
Match: A5BNE4_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_028330 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 9.2e-08
Identity = 28/52 (53.85%), Postives = 35/52 (67.31%), Query Frame = 1 

Query: 72  LFPLTMRDEAKIWANSLETREVRTWEQLIEKFMKKFFQLHENSRRMRDIMNF 124
           LFP T++D+AKIW NSL TR +RTW  L  +F+KKFF  H  +   R I NF
Sbjct: 34  LFPFTLKDKAKIWLNSLRTRSIRTWTNLQAEFLKKFFPTHRTNGLKRQISNF 85

[Close]
BLAST of Csa2G100570 vs. TrEMBL
Match: A5AVP3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_004072 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 9.2e-08
Identity = 28/52 (53.85%), Postives = 35/52 (67.31%), Query Frame = 1 

Query: 72  LFPLTMRDEAKIWANSLETREVRTWEQLIEKFMKKFFQLHENSRRMRDIMNF 124
           LFP T++D+AKIW NSL TR +RTW  L  +F+KKFF  H  +   R I NF
Sbjct: 124 LFPFTLKDKAKIWLNSLRTRSIRTWTDLQAEFLKKFFPTHRTNGLKRQISNF 175

[Close]
BLAST of Csa2G100570 vs. TrEMBL
Match: A5C995_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_020470 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 1.2e-07
Identity = 28/52 (53.85%), Postives = 35/52 (67.31%), Query Frame = 1 

Query: 72  LFPLTMRDEAKIWANSLETREVRTWEQLIEKFMKKFFQLHENSRRMRDIMNF 124
           LFP T++D+AKIW NSL  R +RTW  L  +F+KKFF  HE +   R I NF
Sbjct: 196 LFPFTLKDKAKIWLNSLRPRSIRTWTDLQAEFLKKFFPTHETNGLKRQISNF 247

[Close]
BLAST of Csa2G100570 vs. NCBI nr
Match: gi|700206256|gb|KGN61375.1| (hypothetical protein Csa_2G100570 [Cucumis sativus])

HSP 1 Score: 255.0 bits (650), Expect = 6.9e-65
Identity = 124/124 (100.00%), Postives = 124/124 (100.00%), Query Frame = 1 

Query: 1   MSNKNKVLLNNVAPGQEIFALIVHDLNRPIKIQNTGQFDGYPGKDPTSTSKASTLYVINF 60
           MSNKNKVLLNNVAPGQEIFALIVHDLNRPIKIQNTGQFDGYPGKDPTSTSKASTLYVINF
Sbjct: 1   MSNKNKVLLNNVAPGQEIFALIVHDLNRPIKIQNTGQFDGYPGKDPTSTSKASTLYVINF 60

Query: 61  TYQANRKNNFTLFPLTMRDEAKIWANSLETREVRTWEQLIEKFMKKFFQLHENSRRMRDI 120
           TYQANRKNNFTLFPLTMRDEAKIWANSLETREVRTWEQLIEKFMKKFFQLHENSRRMRDI
Sbjct: 61  TYQANRKNNFTLFPLTMRDEAKIWANSLETREVRTWEQLIEKFMKKFFQLHENSRRMRDI 120

Query: 121 MNFQ 125
           MNFQ
Sbjct: 121 MNFQ 124

[Close]
BLAST of Csa2G100570 vs. NCBI nr
Match: gi|802538129|ref|XP_012067037.1| (PREDICTED: uncharacterized protein LOC105629978 [Jatropha curcas])

HSP 1 Score: 67.8 bits (164), Expect = 1.6e-08
Identity = 37/96 (38.54%), Postives = 57/96 (59.38%), Query Frame = 1 

Query: 32  IQNTGQFDGYPGKDPTSTSKASTLYVINFTYQANRKN----NFTLFPLTMRDEAKIWANS 91
           IQN+ QF G P +DP S   AS L + + T++ N          LFP T++D+AK W NS
Sbjct: 81  IQNSVQFYGLPNEDPNSHI-ASFLEICD-TFKMNSVTADAIKLRLFPFTLKDKAKAWLNS 140

Query: 92  LETREVRTWEQLIEKFMKKFFQLHENSRRMRDIMNF 124
           L    + TWEQL + F+ K+F L + ++ +++I +F
Sbjct: 141 LPPNSITTWEQLAQAFLSKYFPLAKTAKLIKEITSF 174

[Close]
BLAST of Csa2G100570 vs. NCBI nr
Match: gi|802562772|ref|XP_012066545.1| (PREDICTED: uncharacterized protein LOC105629545 [Jatropha curcas])

HSP 1 Score: 66.6 bits (161), Expect = 3.5e-08
Identity = 36/96 (37.50%), Postives = 56/96 (58.33%), Query Frame = 1 

Query: 32  IQNTGQFDGYPGKDPTSTSKASTLYVINFTYQANRKN----NFTLFPLTMRDEAKIWANS 91
           IQN+ QF G P +DP S  + ++   I  T++ N          LFP T++D+AK W NS
Sbjct: 30  IQNSVQFYGLPNEDPNS--RIASFLEICDTFKMNSVPVDAIKLRLFPFTLKDKAKAWLNS 89

Query: 92  LETREVRTWEQLIEKFMKKFFQLHENSRRMRDIMNF 124
           L    + TWEQL + F+ K+F L + +R +++I +F
Sbjct: 90  LPPNCMTTWEQLAQAFLSKYFPLAKTARLIKEITSF 123

[Close]
BLAST of Csa2G100570 vs. NCBI nr
Match: gi|147821064|emb|CAN73138.1| (hypothetical protein VITISV_024470 [Vitis vinifera])

HSP 1 Score: 65.1 bits (157), Expect = 1.0e-07
Identity = 28/52 (53.85%), Postives = 36/52 (69.23%), Query Frame = 1 

Query: 72  LFPLTMRDEAKIWANSLETREVRTWEQLIEKFMKKFFQLHENSRRMRDIMNF 124
           LFP T++D+AKIW NSL TR +RTW  L  +F+KKFF  H+ +   R I NF
Sbjct: 642 LFPFTLKDKAKIWLNSLRTRSIRTWTDLQAEFLKKFFPTHKTNGLKRQISNF 693

[Close]
BLAST of Csa2G100570 vs. NCBI nr
Match: gi|802647417|ref|XP_012079828.1| (PREDICTED: uncharacterized protein LOC105640191 [Jatropha curcas])

HSP 1 Score: 64.7 bits (156), Expect = 1.3e-07
Identity = 35/95 (36.84%), Postives = 55/95 (57.89%), Query Frame = 1 

Query: 32  IQNTGQFDGYPGKDPTSTSKASTLYVINFTYQANRKNN---FTLFPLTMRDEAKIWANSL 91
           IQN+ QF G P +DP S   AS L + + +   +   +     L P T++D+AK W NSL
Sbjct: 46  IQNSVQFYGLPNEDPNSHI-ASFLEICDTSKMNSVPADAIKLRLLPFTLKDKAKAWLNSL 105

Query: 92  ETREVRTWEQLIEKFMKKFFQLHENSRRMRDIMNF 124
               + TWEQL + F+ K+F L + +R +++I +F
Sbjct: 106 SANSITTWEQLAQAFLSKYFPLAKTARLIKEITSF 139

The following BLAST results are available for this feature:
BLAST of Csa2G100570 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LHG4_CUCSA4.8e-65100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_2G100570 PE=4 SV=1[more]
A5C7P4_VITVI7.0e-0853.85Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_024470 PE=4 SV=1[more]
A5BNE4_VITVI9.2e-0853.85Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_028330 PE=4 SV=1[more]
A5AVP3_VITVI9.2e-0853.85Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_004072 PE=4 SV=1[more]
A5C995_VITVI1.2e-0753.85Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_020470 PE=4 SV=1[more]
BLAST of Csa2G100570 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700206256|gb|KGN61375.1|6.9e-65100.00hypothetical protein Csa_2G100570 [Cucumis sativus][more]
gi|802538129|ref|XP_012067037.1|1.6e-0838.54PREDICTED: uncharacterized protein LOC105629978 [Jatropha curcas][more]
gi|802562772|ref|XP_012066545.1|3.5e-0837.50PREDICTED: uncharacterized protein LOC105629545 [Jatropha curcas][more]
gi|147821064|emb|CAN73138.1|1.0e-0753.85hypothetical protein VITISV_024470 [Vitis vinifera][more]
gi|802647417|ref|XP_012079828.1|1.3e-0736.84PREDICTED: uncharacterized protein LOC105640191 [Jatropha curcas][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR005162Retrotrans_gag_dom
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa2G100570.1Csa2G100570.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005162Retrotransposon gag domainPFAMPF03732Retrotrans_gagcoord: 72..124
score: 2.

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa2G100570Wax gourdcuwgoB140
Csa2G100570Cucumber (Gy14) v1cgycuB292
Csa2G100570Cucurbita maxima (Rimu)cmacuB441
Csa2G100570Cucurbita maxima (Rimu)cmacuB793
Csa2G100570Cucurbita moschata (Rifu)cmocuB429
Csa2G100570Cucurbita moschata (Rifu)cmocuB779
Csa2G100570Melon (DHL92) v3.5.1cumeB132
Csa2G100570Watermelon (Charleston Gray)cuwcgB100
Csa2G100570Watermelon (97103) v1cuwmB158
Csa2G100570Cucurbita pepo (Zucchini)cpecuB107
Csa2G100570Cucurbita pepo (Zucchini)cpecuB537
Csa2G100570Bottle gourd (USVL1VR-Ls)culsiB098
Csa2G100570Cucumber (Gy14) v2cgybcuB056
Csa2G100570Melon (DHL92) v3.6.1cumedB135
Csa2G100570Silver-seed gourdcarcuB0719
Csa2G100570Silver-seed gourdcarcuB1082
Csa2G100570Watermelon (97103) v2cuwmbB109
Csa2G100570Watermelon (97103) v2cuwmbB105