Csa2G083720 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa2G083720
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Putative uncharacterized protein At2g38430/T19C21.8
Location	Chr2 : 6766678 .. 6767418 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGGGCATTTTAGATCTTATAAACTCTGCTGTTTTAGACCAAGATGTGATGGGTGGCTTAAGATGGCCTTTGGAGAAAGCTTCCTCTGGCGATAGATTCAGATTGGATAGAGTGTGGCATACTGTTGCCAAGTCTTATGTAAGCCCAGTTGTGAGGCTCAAACTAAGAAATGTCGATCGATATGATTTTGGAACCTCGGTTGGTGAAGCCTCAAAAGAGGTTATTTTGAAGCTGAAACAAGTAACTTCAGAACTACTGGTAAGCATCCTCATTACTTATTTTGGGTTGGGTTGGGTTGGGTTGGACGGAAGAAAATTATAGACTCGTTGGTTGGGCTGGTTCATGGTGGAGAAATATACAATCCAAATAAAGGGTTGCGTATAGAAAGTGCTTGAATAACTCAACTTAACGCCCCTACTGACTGTGTTGGCATTTCTATTTTTCTTTCTAAGAAAGGTTTTAATTTGATTATTTGATAACGTTTACGTGGAAGTTGAAATGCTGCATGTTTAATTACTGTTTTCATCATGTCTGTTCATTTTTTATTGTAGAGAGAGGAAGCTCAATATGATGTTATCTCTGATACGCTTAATGACACCCTGAAGCTGATTTGGAACAACTTTGTATGTTATGCATCTTGTTCATCCCCTATTGTTTCAGTATGATGTAGTTTTTAGGCTCAGTGCAGTTACTTTGATGCAAGCTAAGGCCAAGATTTTCCTTCGCTGTGGTGTGTGA

mRNA sequence

ATGGAGGGCATTTTAGATCTTATAAACTCTGCTGTTTTAGACCAAGATGTGATGGGTGGCTTAAGATGGCCTTTGGAGAAAGCTTCCTCTGGCGATAGATTCAGATTGGATAGAGTGTGGCATACTGTTGCCAAGTCTTATGTAAGCCCAGTTGTGAGGCTCAAACTAAGAAATGTCGATCGATATGATTTTGGAACCTCGGTTGGTGAAGCCTCAAAAGAGGTTATTTTGAAGCTGAAACAAGTAACTTCAGAACTACTGAGAGAGGAAGCTCAATATGATGTTATCTCTGATACGCTTAATGACACCCTGAAGCTGATTTGGAACAACTTTTATGATGTAGTTTTTAGGCTCAGTGCAGTTACTTTGATGCAAGCTAAGGCCAAGATTTTCCTTCGCTGTGGTGTGTGA

Coding sequence (CDS)

ATGGAGGGCATTTTAGATCTTATAAACTCTGCTGTTTTAGACCAAGATGTGATGGGTGGCTTAAGATGGCCTTTGGAGAAAGCTTCCTCTGGCGATAGATTCAGATTGGATAGAGTGTGGCATACTGTTGCCAAGTCTTATGTAAGCCCAGTTGTGAGGCTCAAACTAAGAAATGTCGATCGATATGATTTTGGAACCTCGGTTGGTGAAGCCTCAAAAGAGGTTATTTTGAAGCTGAAACAAGTAACTTCAGAACTACTGAGAGAGGAAGCTCAATATGATGTTATCTCTGATACGCTTAATGACACCCTGAAGCTGATTTGGAACAACTTTTATGATGTAGTTTTTAGGCTCAGTGCAGTTACTTTGATGCAAGCTAAGGCCAAGATTTTCCTTCGCTGTGGTGTGTGA

Protein sequence

MEGILDLINSAVLDQDVMGGLRWPLEKASSGDRFRLDRVWHTVAKSYVSPVVRLKLRNVDRYDFGTSVGEASKEVILKLKQVTSELLREEAQYDVISDTLNDTLKLIWNNFYDVVFRLSAVTLMQAKAKIFLRCGV*

Homology

[Close]

BLAST of Csa2G083720 vs. TrEMBL
Match: A0A0A0LHA6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G083720 PE=4 SV=1)

HSP 1 Score: 269.2 bits (687), Expect = 2.7e-69
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 1


Query: 1   MEGILDLINSAVLDQDVMGGLRWPLEKASSGDRFRLDRVWHTVAKSYVSPVVRLKLRNVD 60
           MEGILDLINSAVLDQDVMGGLRWPLEKASSGDRFRLDRVWHTVAKSYVSPVVRLKLRNVD
Sbjct: 1   MEGILDLINSAVLDQDVMGGLRWPLEKASSGDRFRLDRVWHTVAKSYVSPVVRLKLRNVD 60

Query: 61  RYDFGTSVGEASKEVILKLKQVTSELLREEAQYDVISDTLNDTLKLIWNNFYDVVFRLSA 120
           RYDFGTSVGEASKEVILKLKQVTSELLREEAQYDVISDTLNDTLKLIWNNFYDVVFRLSA
Sbjct: 61  RYDFGTSVGEASKEVILKLKQVTSELLREEAQYDVISDTLNDTLKLIWNNFYDVVFRLSA 120

Query: 121 VTLMQAKAKIFLRCGV 137
           VTLMQAKAKIFLRCGV
Sbjct: 121 VTLMQAKAKIFLRCGV 136

[Close]

BLAST of Csa2G083720 vs. TrEMBL
Match: A0A061F8D4_THECC (Uncharacterized protein isoform 1 OS=Theobroma cacao GN=TCM_026052 PE=4 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 2.3e-28
Identity = 65/111 (58.56%), Postives = 86/111 (77.48%), Query Frame = 1


Query: 1   MEGILDLINSAVLDQDVMGGLRWPLEKASSGDRFRLDRVWHTVAKSYVSPVVRLKLRNVD 60
           ++ I +LI+SAVLD DV GGLRWPL KAS+GDR+ +  VWHT+A +Y    +RLK+R  D
Sbjct: 282 IQNIRNLIDSAVLDPDVKGGLRWPLGKASTGDRYSVVGVWHTMATTYQGSSMRLKVRYAD 341

Query: 61  RYDFGTSVGEASKEVILKLKQVTSELLREEAQYDVISDTLNDTLKLIWNNF 112
           R+DF T+ GE+SKEV+LKLK + S LL +EA+ +VISD L DTL+LIW +F
Sbjct: 342 RFDFRTAYGESSKEVVLKLKGMVSGLLEQEAETNVISDMLKDTLRLIWQHF 392

[Close]

BLAST of Csa2G083720 vs. TrEMBL
Match: A0A067JLW5_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23611 PE=4 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 1.5e-27
Identity = 61/111 (54.95%), Postives = 83/111 (74.77%), Query Frame = 1


Query: 1   MEGILDLINSAVLDQDVMGGLRWPLEKASSGDRFRLDRVWHTVAKSYVSPVVRLKLRNVD 60
           M  I DLI+SAVLD DV GGLRWPL K +SG+R+ +  VWHT+AK+Y +P VRLK+R+ D
Sbjct: 286 MNKIRDLIDSAVLDSDVKGGLRWPLGKTTSGNRYTVVGVWHTIAKAYKNPSVRLKVRHAD 345

Query: 61  RYDFGTSVGEASKEVILKLKQVTSELLREEAQYDVISDTLNDTLKLIWNNF 112
           R+DF T  GE+++E+ LKLK V S+L  + A+ D +S+ L D L+LIW +F
Sbjct: 346 RFDFRTGTGESTREIYLKLKGVVSQLQEQGAESDAVSNMLKDNLRLIWEHF 396

[Close]

BLAST of Csa2G083720 vs. TrEMBL
Match: A0A0A0LHP7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G083700 PE=4 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 2.5e-27
Identity = 63/87 (72.41%), Postives = 74/87 (85.06%), Query Frame = 1


Query: 1   MEGILDLINSAVLDQDVMGGLRWPLEKASSGDRFRLDRVWHTVAKSYVSPVVRLKLRNVD 60
           MEGI+ LINSAVLDQD+MGGLRWPL KA+SG+RFR+  VWHTV+K YV+P +RL+LRN +
Sbjct: 279 MEGIVGLINSAVLDQDMMGGLRWPLGKATSGNRFRVVEVWHTVSKYYVNPFLRLQLRNAN 338

Query: 61  RYDFGTSVGEASKEVILKLKQVTSELL 88
           RYD  TS+GEASKEV L LK VT ELL
Sbjct: 339 RYDLSTSIGEASKEVTLNLKHVTFELL 365

[Close]

BLAST of Csa2G083720 vs. TrEMBL
Match: M5WB14_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa006260mg PE=4 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 4.3e-27
Identity = 59/111 (53.15%), Postives = 83/111 (74.77%), Query Frame = 1


Query: 1   MEGILDLINSAVLDQDVMGGLRWPLEKASSGDRFRLDRVWHTVAKSYVSPVVRLKLRNVD 60
           M+ I DLI+SAVLD DV GGLRWPL K SSGDR+++  +WH +A  Y +P +RLK+R+ D
Sbjct: 302 MQSIRDLISSAVLDPDVKGGLRWPLGKESSGDRYKVVGIWHVIANMYTNPSLRLKVRHAD 361

Query: 61  RYDFGTSVGEASKEVILKLKQVTSELLREEAQYDVISDTLNDTLKLIWNNF 112
           R+DF TS GEA+ EV L LK+V S+L  E+ ++  IS+ L + +++IW+NF
Sbjct: 362 RFDFRTSTGEATWEVSLMLKKVVSKLQEEKVEFSSISEILEENMRMIWDNF 412

[Close]

BLAST of Csa2G083720 vs. TAIR10
Match: AT3G54310.1 (AT3G54310.1 unknown protein)

HSP 1 Score: 103.6 bits (257), Expect = 9.9e-23
Identity = 51/107 (47.66%), Postives = 69/107 (64.49%), Query Frame = 1


Query: 6   DLINSAVLDQDVMGGLRWPLEKASSGDRFRLDRVWHTVAKSYVSPVVRLKLRNVDRYDFG 65
           +L +SAV+D  V GGL+WPL K+S  DR+ +  VWHTV  +Y++  +RL++R  DRYDF 
Sbjct: 248 ELTDSAVVDPTVKGGLKWPLGKSSCADRYIVCGVWHTVTTTYINQTMRLQIREADRYDFR 307

Query: 66  TSVGEASKEVILKLKQVTSELLREE-AQYDVISDTLNDTLKLIWNNF 112
           T VG  S EV  KLK +++ LL+EE  +   +SD L D LK +W  F
Sbjct: 308 TGVGGTSSEVNFKLKALSTILLKEEDVERKCVSDMLKDCLKAVWEYF 354

[Close]

BLAST of Csa2G083720 vs. TAIR10
Match: AT2G38430.1 (AT2G38430.1 unknown protein)

HSP 1 Score: 75.5 bits (184), Expect = 2.9e-14
Identity = 37/103 (35.92%), Postives = 57/103 (55.34%), Query Frame = 1


Query: 7   LINSAVLDQDVMGGLRWPLEKASSGDRFRLDRVWHTVAKSYVSPVVRLKLRNVDRYDFGT 66
           L+ SA +D +V GGLRWP  KA S D ++   V H  A  Y +  +RL++R  DR++  T
Sbjct: 282 LLESATVDPNVKGGLRWPFGKALSEDGYKEFEVCHVRATIYKNKTLRLRVRETDRFNETT 341

Query: 67  SVGEASKEVILKLKQVTSELLREEAQYDVISDTLNDTLKLIWN 110
             GE  +EV L LK + +++  +  +   + + L D L  IW+
Sbjct: 342 GTGETKREVSLTLKDIDTKIQEQNTERGCVLEMLRDALGTIWD 384

[Close]

BLAST of Csa2G083720 vs. NCBI nr
Match: gi|700206206|gb|KGN61325.1| (hypothetical protein Csa_2G083720 [Cucumis sativus])

HSP 1 Score: 269.2 bits (687), Expect = 3.8e-69
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 1


Query: 1   MEGILDLINSAVLDQDVMGGLRWPLEKASSGDRFRLDRVWHTVAKSYVSPVVRLKLRNVD 60
           MEGILDLINSAVLDQDVMGGLRWPLEKASSGDRFRLDRVWHTVAKSYVSPVVRLKLRNVD
Sbjct: 1   MEGILDLINSAVLDQDVMGGLRWPLEKASSGDRFRLDRVWHTVAKSYVSPVVRLKLRNVD 60

Query: 61  RYDFGTSVGEASKEVILKLKQVTSELLREEAQYDVISDTLNDTLKLIWNNFYDVVFRLSA 120
           RYDFGTSVGEASKEVILKLKQVTSELLREEAQYDVISDTLNDTLKLIWNNFYDVVFRLSA
Sbjct: 61  RYDFGTSVGEASKEVILKLKQVTSELLREEAQYDVISDTLNDTLKLIWNNFYDVVFRLSA 120

Query: 121 VTLMQAKAKIFLRCGV 137
           VTLMQAKAKIFLRCGV
Sbjct: 121 VTLMQAKAKIFLRCGV 136

[Close]

BLAST of Csa2G083720 vs. NCBI nr
Match: gi|778674115|ref|XP_011650137.1| (PREDICTED: uncharacterized protein LOC105434728 [Cucumis sativus])

HSP 1 Score: 206.8 bits (525), Expect = 2.3e-50
Identity = 112/136 (82.35%), Postives = 112/136 (82.35%), Query Frame = 1


Query: 1   MEGILDLINSAVLDQDVMGGLRWPLEKASSGDRFRLDRVWHTVAKSYVSPVVRLKLRNVD 60
           MEGILDLINSAVLDQDVMGGLRWPLEKASSGDRFRLDRVWHTVAKSYVSPVVRLKLRNVD
Sbjct: 271 MEGILDLINSAVLDQDVMGGLRWPLEKASSGDRFRLDRVWHTVAKSYVSPVVRLKLRNVD 330

Query: 61  RYDFGTSVGEASKEVILKLKQVTSELLREEAQYDVISDTLNDTLKLIWNNFYDVVFRLSA 120
           RYDFGTSVGEASKEVILKLKQVTSELL                        YDVVFRLSA
Sbjct: 331 RYDFGTSVGEASKEVILKLKQVTSELL------------------------YDVVFRLSA 382

Query: 121 VTLMQAKAKIFLRCGV 137
           VTLMQAKAKIFLRCGV
Sbjct: 391 VTLMQAKAKIFLRCGV 382

[Close]

BLAST of Csa2G083720 vs. NCBI nr
Match: gi|778668027|ref|XP_011649026.1| (PREDICTED: uncharacterized protein LOC101218529 [Cucumis sativus])

HSP 1 Score: 159.1 bits (401), Expect = 5.6e-36
Identity = 77/111 (69.37%), Postives = 91/111 (81.98%), Query Frame = 1


Query: 1   MEGILDLINSAVLDQDVMGGLRWPLEKASSGDRFRLDRVWHTVAKSYVSPVVRLKLRNVD 60
           MEGI+ LINSAVLDQD+MGGLRWPL KA+SG+RFR+  VWHTV+K YV+P +RL+LRN +
Sbjct: 279 MEGIVGLINSAVLDQDMMGGLRWPLGKATSGNRFRVVEVWHTVSKYYVNPFLRLQLRNAN 338

Query: 61  RYDFGTSVGEASKEVILKLKQVTSELLREEAQYDVISDTLNDTLKLIWNNF 112
           RYD  TS+GEASKEV L LK VT ELLRE+ +YDVI D L D LKL W +F
Sbjct: 339 RYDLSTSIGEASKEVTLNLKHVTFELLREKVEYDVIIDMLKDHLKLFWKHF 389

[Close]

BLAST of Csa2G083720 vs. NCBI nr
Match: gi|659082381|ref|XP_008441810.1| (PREDICTED: uncharacterized protein LOC103485862 isoform X1 [Cucumis melo])

HSP 1 Score: 157.1 bits (396), Expect = 2.1e-35
Identity = 76/111 (68.47%), Postives = 92/111 (82.88%), Query Frame = 1


Query: 1   MEGILDLINSAVLDQDVMGGLRWPLEKASSGDRFRLDRVWHTVAKSYVSPVVRLKLRNVD 60
           MEGI+ LINSAVLDQD+MGGLRWPL KA+SGDRFR+  VWHTV+K YV+P+++L+LRN +
Sbjct: 279 MEGIVGLINSAVLDQDMMGGLRWPLGKATSGDRFRVLEVWHTVSKYYVNPLLKLQLRNAN 338

Query: 61  RYDFGTSVGEASKEVILKLKQVTSELLREEAQYDVISDTLNDTLKLIWNNF 112
           RYD  TS+GEASKEV L LK+VT ELLRE+ +Y VI D L D LKL W +F
Sbjct: 339 RYDLRTSIGEASKEVTLSLKRVTFELLREKVEYGVIFDMLKDHLKLFWKHF 389

[Close]

BLAST of Csa2G083720 vs. NCBI nr
Match: gi|590641497|ref|XP_007030247.1| (Uncharacterized protein isoform 1 [Theobroma cacao])

HSP 1 Score: 133.3 bits (334), Expect = 3.3e-28
Identity = 65/111 (58.56%), Postives = 86/111 (77.48%), Query Frame = 1


Query: 1   MEGILDLINSAVLDQDVMGGLRWPLEKASSGDRFRLDRVWHTVAKSYVSPVVRLKLRNVD 60
           ++ I +LI+SAVLD DV GGLRWPL KAS+GDR+ +  VWHT+A +Y    +RLK+R  D
Sbjct: 282 IQNIRNLIDSAVLDPDVKGGLRWPLGKASTGDRYSVVGVWHTMATTYQGSSMRLKVRYAD 341

Query: 61  RYDFGTSVGEASKEVILKLKQVTSELLREEAQYDVISDTLNDTLKLIWNNF 112
           R+DF T+ GE+SKEV+LKLK + S LL +EA+ +VISD L DTL+LIW +F
Sbjct: 342 RFDFRTAYGESSKEVVLKLKGMVSGLLEQEAETNVISDMLKDTLRLIWQHF 392

The following BLAST results are available for this feature:

BLAST of Csa2G083720 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LHA6_CUCSA	2.7e-69	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G083720 PE=4 SV=1	[more]
A0A061F8D4_THECC	2.3e-28	58.56	Uncharacterized protein isoform 1 OS=Theobroma cacao GN=TCM_026052 PE=4 SV=1	[more]
A0A067JLW5_JATCU	1.5e-27	54.95	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23611 PE=4 SV=1	[more]
A0A0A0LHP7_CUCSA	2.5e-27	72.41	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G083700 PE=4 SV=1	[more]
M5WB14_PRUPE	4.3e-27	53.15	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa006260mg PE=4 SV=1	[more]

BLAST of Csa2G083720 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G54310.1	9.9e-23	47.66	unknown protein	[more]
AT2G38430.1	2.9e-14	35.92	unknown protein	[more]

BLAST of Csa2G083720 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700206206\|gb\|KGN61325.1\|	3.8e-69	100.00	hypothetical protein Csa_2G083720 [Cucumis sativus]	[more]
gi\|778674115\|ref\|XP_011650137.1\|	2.3e-50	82.35	PREDICTED: uncharacterized protein LOC105434728 [Cucumis sativus]	[more]
gi\|778668027\|ref\|XP_011649026.1\|	5.6e-36	69.37	PREDICTED: uncharacterized protein LOC101218529 [Cucumis sativus]	[more]
gi\|659082381\|ref\|XP_008441810.1\|	2.1e-35	68.47	PREDICTED: uncharacterized protein LOC103485862 isoform X1 [Cucumis melo]	[more]
gi\|590641497\|ref\|XP_007030247.1\|	3.3e-28	58.56	Uncharacterized protein isoform 1 [Theobroma cacao]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa2G083720.1	Csa2G083720.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR35481	FAMILY NOT NAMED	coord: 1..118 score: 2.7

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa2G083720	Lsi11G009200	Bottle gourd (USVL1VR-Ls)	culsiB098

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa2G083720	Cucurbita pepo (Zucchini)	cpecuB098
Csa2G083720	Cucurbita pepo (Zucchini)	cpecuB811
Csa2G083720	Cucumber (Gy14) v2	cgybcuB056
Csa2G083720	Melon (DHL92) v3.6.1	cumedB129
Csa2G083720	Melon (DHL92) v3.6.1	cumedB135
Csa2G083720	Silver-seed gourd	carcuB0514
Csa2G083720	Watermelon (97103) v2	cuwmbB109
Csa2G083720	Wax gourd	cuwgoB139
Csa2G083720	Cucumber (Gy14) v1	cgycuB396
Csa2G083720	Cucurbita maxima (Rimu)	cmacuB165
Csa2G083720	Cucurbita maxima (Rimu)	cmacuB786
Csa2G083720	Cucurbita moschata (Rifu)	cmocuB150
Csa2G083720	Cucurbita moschata (Rifu)	cmocuB779
Csa2G083720	Cucurbita moschata (Rifu)	cmocuB787
Csa2G083720	Melon (DHL92) v3.5.1	cumeB142
Csa2G083720	Watermelon (Charleston Gray)	cuwcgB103