Csa2G078060 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa2G078060
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr2 : 6421105 .. 6421455 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGTGGTCAAGTCTATTCCCAACAAAACTGATCAAAAAAACCGAACAAAACCCCCCCCCCCCCCACAACGCCAACAACTCTTGGCTAGAAATATGTGAAGCTATACAATCGACATTCTCATCTCGGTGCACAATCAATCCCTTCCTTGACAACAAGACCCTCATACATGTTTATGATACTACGGTTGCTCAATTCTTATACAACCATGAGGACTGGGAATCGATTCGGAAATTCAACCTACATTTCTTGGATGCATCTCTTATTTCTTCATATCTTTGCCAGCAAACTGCATCTTATGGAGGTTGGATTGATGTTTTTGACCTCCCACCAATTTTATGGAATGAGTAA

mRNA sequence

ATGAAGTGGTCAAGTCTATTCCCAACAAAACTGATCAAAAAAACCGAACAAAACCCCCCCCCCCCCCACAACGCCAACAACTCTTGGCTAGAAATATGTGAAGCTATACAATCGACATTCTCATCTCGGTGCACAATCAATCCCTTCCTTGACAACAAGACCCTCATACATGTTTATGATACTACGGTTGCTCAATTCTTATACAACCATGAGGACTGGGAATCGATTCGGAAATTCAACCTACATTTCTTGGATGCATCTCTTATTTCTTCATATCTTTGCCAGCAAACTGCATCTTATGGAGGTTGGATTGATGTTTTTGACCTCCCACCAATTTTATGGAATGAGTAA

Coding sequence (CDS)

ATGAAGTGGTCAAGTCTATTCCCAACAAAACTGATCAAAAAAACCGAACAAAACCCCCCCCCCCCCCACAACGCCAACAACTCTTGGCTAGAAATATGTGAAGCTATACAATCGACATTCTCATCTCGGTGCACAATCAATCCCTTCCTTGACAACAAGACCCTCATACATGTTTATGATACTACGGTTGCTCAATTCTTATACAACCATGAGGACTGGGAATCGATTCGGAAATTCAACCTACATTTCTTGGATGCATCTCTTATTTCTTCATATCTTTGCCAGCAAACTGCATCTTATGGAGGTTGGATTGATGTTTTTGACCTCCCACCAATTTTATGGAATGAGTAA

Protein sequence

MKWSSLFPTKLIKKTEQNPPPPHNANNSWLEICEAIQSTFSSRCTINPFLDNKTLIHVYDTTVAQFLYNHEDWESIRKFNLHFLDASLISSYLCQQTASYGGWIDVFDLPPILWNE*

Homology

[Close]

BLAST of Csa2G078060 vs. TrEMBL
Match: A0A0A0LKM1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G078060 PE=4 SV=1)

HSP 1 Score: 251.9 bits (642), Expect = 3.8e-64
Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 1


Query: 1   MKWSSLFPTKLIKKTEQNPPPPHNANNSWLEICEAIQSTFSSRCTINPFLDNKTLIHVYD 60
           MKWSSLFPTKLIKKTEQNPPPPHNANNSWLEICEAIQSTFSSRCTINPFLDNKTLIHVYD
Sbjct: 1   MKWSSLFPTKLIKKTEQNPPPPHNANNSWLEICEAIQSTFSSRCTINPFLDNKTLIHVYD 60

Query: 61  TTVAQFLYNHEDWESIRKFNLHFLDASLISSYLCQQTASYGGWIDVFDLPPILWNE 117
           TTVAQFLYNHEDWESIRKFNLHFLDASLISSYLCQQTASYGGWIDVFDLPPILWNE
Sbjct: 61  TTVAQFLYNHEDWESIRKFNLHFLDASLISSYLCQQTASYGGWIDVFDLPPILWNE 116

[Close]

BLAST of Csa2G078060 vs. TrEMBL
Match: A0A0A0KPT1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G314850 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 1.7e-11
Identity = 45/101 (44.55%), Postives = 56/101 (55.45%), Query Frame = 1


Query: 18  NPPPPHNANNSWLEICEAIQSTFSSRCTINPFLDNKTLIHVYDTTVAQFLYNHEDWESIR 77
           N PP H       E+ + I +    R + +    +  LIHVYD TVA+ L+ HED    R
Sbjct: 23  NKPPKH-------EVVKPIPNRSDPRSSPHSNWKSMALIHVYDATVAKSLHKHED----R 82

Query: 78  KFNLHFLDA--SLISSYLCQQTASYGGWIDVFDLPPILWNE 117
              +    +   L SSYLC QTASYGGWID+FDLPPIL  E
Sbjct: 83  ALEISICGSWMQLTSSYLCHQTASYGGWIDIFDLPPILCYE 112

[Close]

BLAST of Csa2G078060 vs. NCBI nr
Match: gi|700206183|gb|KGN61302.1| (hypothetical protein Csa_2G078060 [Cucumis sativus])

HSP 1 Score: 251.9 bits (642), Expect = 5.4e-64
Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 1


Query: 1   MKWSSLFPTKLIKKTEQNPPPPHNANNSWLEICEAIQSTFSSRCTINPFLDNKTLIHVYD 60
           MKWSSLFPTKLIKKTEQNPPPPHNANNSWLEICEAIQSTFSSRCTINPFLDNKTLIHVYD
Sbjct: 1   MKWSSLFPTKLIKKTEQNPPPPHNANNSWLEICEAIQSTFSSRCTINPFLDNKTLIHVYD 60

Query: 61  TTVAQFLYNHEDWESIRKFNLHFLDASLISSYLCQQTASYGGWIDVFDLPPILWNE 117
           TTVAQFLYNHEDWESIRKFNLHFLDASLISSYLCQQTASYGGWIDVFDLPPILWNE
Sbjct: 61  TTVAQFLYNHEDWESIRKFNLHFLDASLISSYLCQQTASYGGWIDVFDLPPILWNE 116

[Close]

BLAST of Csa2G078060 vs. NCBI nr
Match: gi|700195712|gb|KGN50889.1| (hypothetical protein Csa_5G314850 [Cucumis sativus])

HSP 1 Score: 77.0 bits (188), Expect = 2.4e-11
Identity = 45/101 (44.55%), Postives = 56/101 (55.45%), Query Frame = 1


Query: 18  NPPPPHNANNSWLEICEAIQSTFSSRCTINPFLDNKTLIHVYDTTVAQFLYNHEDWESIR 77
           N PP H       E+ + I +    R + +    +  LIHVYD TVA+ L+ HED    R
Sbjct: 23  NKPPKH-------EVVKPIPNRSDPRSSPHSNWKSMALIHVYDATVAKSLHKHED----R 82

Query: 78  KFNLHFLDA--SLISSYLCQQTASYGGWIDVFDLPPILWNE 117
              +    +   L SSYLC QTASYGGWID+FDLPPIL  E
Sbjct: 83  ALEISICGSWMQLTSSYLCHQTASYGGWIDIFDLPPILCYE 112

The following BLAST results are available for this feature:

BLAST of Csa2G078060 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LKM1_CUCSA	3.8e-64	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G078060 PE=4 SV=1	[more]
A0A0A0KPT1_CUCSA	1.7e-11	44.55	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G314850 PE=4 SV=1	[more]

BLAST of Csa2G078060 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700206183\|gb\|KGN61302.1\|	5.4e-64	100.00	hypothetical protein Csa_2G078060 [Cucumis sativus]	[more]
gi\|700195712\|gb\|KGN50889.1\|	2.4e-11	44.55	hypothetical protein Csa_5G314850 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa2G078060.1	Csa2G078060.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa2G078060	CsGy2G007830	Cucumber (Gy14) v2	cgybcuB056

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa2G078060	Watermelon (97103) v2	cuwmbB109
Csa2G078060	Wax gourd	cuwgoB139
Csa2G078060	Cucumber (Gy14) v1	cgycuB274
Csa2G078060	Cucurbita maxima (Rimu)	cmacuB165
Csa2G078060	Cucurbita maxima (Rimu)	cmacuB786
Csa2G078060	Cucurbita moschata (Rifu)	cmocuB150
Csa2G078060	Cucurbita moschata (Rifu)	cmocuB779
Csa2G078060	Melon (DHL92) v3.5.1	cumeB137
Csa2G078060	Watermelon (Charleston Gray)	cuwcgB103
Csa2G078060	Watermelon (97103) v1	cuwmB156
Csa2G078060	Cucurbita pepo (Zucchini)	cpecuB098
Csa2G078060	Cucurbita pepo (Zucchini)	cpecuB811
Csa2G078060	Bottle gourd (USVL1VR-Ls)	culsiB098
Csa2G078060	Melon (DHL92) v3.6.1	cumedB129
Csa2G078060	Melon (DHL92) v3.6.1	cumedB135
Csa2G078060	Silver-seed gourd	carcuB0514