Csa2G076020 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa2G076020
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Transcriptional regulator ATRX; contains IPR000330 (SNF2-related), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)
Location	Chr2 : 6322857 .. 6323084 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTTTTCTGCTGCAGATTTCTGGAATAAGATTTATGTGGGAAAATATCATTCAATCAATACGGAAAGTGAAGTCTGGGGATAAAGGACTTGGATGCATTCTTGCTCATACAATGGGCCTTGGTAAAACTTTTCAGGTATTTGTTTCTTTGAGCTGTTACAGGCCCTTGTTTATTTATATGAAAGGTGGTTCTTTGATTTCCCCCCTCTATAAAGAAGATAAATAA

mRNA sequence

ATGGTTTTTCTGCTGCAGATTTCTGGAATAAGATTTATGTGGGAAAATATCATTCAATCAATACGGAAAGTGAAGTCTGGGGATAAAGGACTTGGATGCATTCTTGCTCATACAATGGGCCTTGGTAAAACTTTTCAGGTATTTGTTTCTTTGAGCTGTTACAGGCCCTTGTTTATTTATATGAAAGGTGGTTCTTTGATTTCCCCCCTCTATAAAGAAGATAAATAA

Coding sequence (CDS)

ATGGTTTTTCTGCTGCAGATTTCTGGAATAAGATTTATGTGGGAAAATATCATTCAATCAATACGGAAAGTGAAGTCTGGGGATAAAGGACTTGGATGCATTCTTGCTCATACAATGGGCCTTGGTAAAACTTTTCAGGTATTTGTTTCTTTGAGCTGTTACAGGCCCTTGTTTATTTATATGAAAGGTGGTTCTTTGATTTCCCCCCTCTATAAAGAAGATAAATAA

Protein sequence

MVFLLQISGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVFVSLSCYRPLFIYMKGGSLISPLYKEDK*

Homology

[Close]

BLAST of Csa2G076020 vs. Swiss-Prot
Match: CHR20_ARATH (Protein CHROMATIN REMODELING 20 OS=Arabidopsis thaliana GN=ATRX PE=2 SV=2)

HSP 1 Score: 85.9 bits (211), Expect = 2.1e-16
Identity = 42/66 (63.64%), Postives = 51/66 (77.27%), Query Frame = 1


Query: 6   QISGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVFVSL-SCYRPLFIYMKGG 65
           Q++GIRFMWENIIQSI +VKSGDKGLGCILAHTMGLGKTFQV   L +  R + + +K  
Sbjct: 723 QVTGIRFMWENIIQSISRVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRCVDLGLKTA 782

Query: 66  SLISPL 71
            +++P+
Sbjct: 783 LIVTPV 788

[Close]

BLAST of Csa2G076020 vs. Swiss-Prot
Match: ARIP4_XENTR (Helicase ARIP4 OS=Xenopus tropicalis GN=rad54l2 PE=2 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 1.0e-07
Identity = 25/42 (59.52%), Postives = 32/42 (76.19%), Query Frame = 1


Query: 6   QISGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQV 48
           QI GIRF+++N+++S+ +  SG  G GCILAH+MGLGKT QV
Sbjct: 273 QIGGIRFLYDNLVESLERF-SGSSGFGCILAHSMGLGKTLQV 313

[Close]

BLAST of Csa2G076020 vs. Swiss-Prot
Match: ARIP4_HUMAN (Helicase ARIP4 OS=Homo sapiens GN=RAD54L2 PE=1 SV=4)

HSP 1 Score: 55.5 bits (132), Expect = 3.0e-07
Identity = 24/42 (57.14%), Postives = 32/42 (76.19%), Query Frame = 1


Query: 6   QISGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQV 48
           QI GIRF+++N+++S+ + K+   G GCILAH+MGLGKT QV
Sbjct: 275 QIGGIRFLYDNLVESLERFKTSS-GFGCILAHSMGLGKTLQV 315

[Close]

BLAST of Csa2G076020 vs. Swiss-Prot
Match: ARIP4_MOUSE (Helicase ARIP4 OS=Mus musculus GN=Rad54l2 PE=1 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 3.0e-07
Identity = 24/42 (57.14%), Postives = 32/42 (76.19%), Query Frame = 1


Query: 6   QISGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQV 48
           QI GIRF+++N+++S+ + K+   G GCILAH+MGLGKT QV
Sbjct: 274 QIGGIRFLYDNLVESLERFKTSS-GFGCILAHSMGLGKTLQV 314

[Close]

BLAST of Csa2G076020 vs. Swiss-Prot
Match: ATRX_HUMAN (Transcriptional regulator ATRX OS=Homo sapiens GN=ATRX PE=1 SV=5)

HSP 1 Score: 52.0 bits (123), Expect = 3.4e-06
Identity = 23/42 (54.76%), Postives = 28/42 (66.67%), Query Frame = 1


Query: 6    QISGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQV 48
            Q+ G++FMW+   +S++K K    G GCILAH MGLGKT QV
Sbjct: 1564 QVDGVQFMWDCCCESVKKTKKSP-GSGCILAHCMGLGKTLQV 1604

[Close]

BLAST of Csa2G076020 vs. TrEMBL
Match: A0A0A0LH69_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G076020 PE=4 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 5.3e-35
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 1


Query: 1  MVFLLQISGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVFVSLSCYRPLFIY 60
          MVFLLQISGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVFVSLSCYRPLFIY
Sbjct: 1  MVFLLQISGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVFVSLSCYRPLFIY 60

Query: 61 MKGGSLISPLYKEDK 76
          MKGGSLISPLYKEDK
Sbjct: 61 MKGGSLISPLYKEDK 75

[Close]

BLAST of Csa2G076020 vs. TrEMBL
Match: A0A0L9THU5_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan845s001500 PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 1.6e-15
Identity = 45/66 (68.18%), Postives = 54/66 (81.82%), Query Frame = 1


Query: 6   QISGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVFVSL-SCYRPLFIYMKGG 65
           QISGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQV   L +  R + + ++  
Sbjct: 734 QISGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRCVDLGLRTA 793

Query: 66  SLISPL 71
            +++P+
Sbjct: 794 LIVTPV 799

[Close]

BLAST of Csa2G076020 vs. TrEMBL
Match: V7BDN3_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_007G116600g PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 1.6e-15
Identity = 45/66 (68.18%), Postives = 54/66 (81.82%), Query Frame = 1


Query: 6   QISGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVFVSL-SCYRPLFIYMKGG 65
           QISGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQV   L +  R + + ++  
Sbjct: 396 QISGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRCVDLGLRTA 455

Query: 66  SLISPL 71
            +++P+
Sbjct: 456 LIVTPV 461

[Close]

BLAST of Csa2G076020 vs. TrEMBL
Match: A0A0S3SQ35_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.08G159600 PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 1.6e-15
Identity = 45/66 (68.18%), Postives = 54/66 (81.82%), Query Frame = 1


Query: 6   QISGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVFVSL-SCYRPLFIYMKGG 65
           QISGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQV   L +  R + + ++  
Sbjct: 734 QISGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRCVDLGLRTA 793

Query: 66  SLISPL 71
            +++P+
Sbjct: 794 LIVTPV 799

[Close]

BLAST of Csa2G076020 vs. TrEMBL
Match: V7BGF9_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_007G116600g PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 1.6e-15
Identity = 45/66 (68.18%), Postives = 54/66 (81.82%), Query Frame = 1


Query: 6   QISGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVFVSL-SCYRPLFIYMKGG 65
           QISGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQV   L +  R + + ++  
Sbjct: 610 QISGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRCVDLGLRTA 669

Query: 66  SLISPL 71
            +++P+
Sbjct: 670 LIVTPV 675

[Close]

BLAST of Csa2G076020 vs. TAIR10
Match: AT1G08600.3 (AT1G08600.3 P-loop containing nucleoside triphosphate hydrolases superfamily protein)

HSP 1 Score: 85.9 bits (211), Expect = 1.2e-17
Identity = 42/66 (63.64%), Postives = 51/66 (77.27%), Query Frame = 1


Query: 6   QISGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVFVSL-SCYRPLFIYMKGG 65
           Q++GIRFMWENIIQSI +VKSGDKGLGCILAHTMGLGKTFQV   L +  R + + +K  
Sbjct: 723 QVTGIRFMWENIIQSISRVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRCVDLGLKTA 782

Query: 66  SLISPL 71
            +++P+
Sbjct: 783 LIVTPV 788

[Close]

BLAST of Csa2G076020 vs. NCBI nr
Match: gi|700206176|gb|KGN61295.1| (hypothetical protein Csa_2G076020 [Cucumis sativus])

HSP 1 Score: 154.5 bits (389), Expect = 7.7e-35
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 1


Query: 1  MVFLLQISGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVFVSLSCYRPLFIY 60
          MVFLLQISGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVFVSLSCYRPLFIY
Sbjct: 1  MVFLLQISGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVFVSLSCYRPLFIY 60

Query: 61 MKGGSLISPLYKEDK 76
          MKGGSLISPLYKEDK
Sbjct: 61 MKGGSLISPLYKEDK 75

[Close]

BLAST of Csa2G076020 vs. NCBI nr
Match: gi|951024627|ref|XP_014513464.1| (PREDICTED: protein CHROMATIN REMODELING 20 isoform X2 [Vigna radiata var. radiata])

HSP 1 Score: 89.7 bits (221), Expect = 2.3e-15
Identity = 45/66 (68.18%), Postives = 54/66 (81.82%), Query Frame = 1


Query: 6   QISGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVFVSL-SCYRPLFIYMKGG 65
           QISGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQV   L +  R + + ++  
Sbjct: 635 QISGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRCVDLGLRTA 694

Query: 66  SLISPL 71
            +++P+
Sbjct: 695 LIVTPV 700

[Close]

BLAST of Csa2G076020 vs. NCBI nr
Match: gi|920683242|gb|KOM29987.1| (hypothetical protein LR48_Vigan845s001500 [Vigna angularis])

HSP 1 Score: 89.7 bits (221), Expect = 2.3e-15
Identity = 45/66 (68.18%), Postives = 54/66 (81.82%), Query Frame = 1


Query: 6   QISGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVFVSL-SCYRPLFIYMKGG 65
           QISGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQV   L +  R + + ++  
Sbjct: 734 QISGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRCVDLGLRTA 793

Query: 66  SLISPL 71
            +++P+
Sbjct: 794 LIVTPV 799

[Close]

BLAST of Csa2G076020 vs. NCBI nr
Match: gi|302143565|emb|CBI22318.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 89.7 bits (221), Expect = 2.3e-15
Identity = 44/66 (66.67%), Postives = 54/66 (81.82%), Query Frame = 1


Query: 6   QISGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVFVSL-SCYRPLFIYMKGG 65
           QI+GIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQV   L +  R + + ++  
Sbjct: 709 QITGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSIDLGLRTA 768

Query: 66  SLISPL 71
            +++P+
Sbjct: 769 LIVTPV 774

[Close]

BLAST of Csa2G076020 vs. NCBI nr
Match: gi|951024624|ref|XP_014513463.1| (PREDICTED: protein CHROMATIN REMODELING 20 isoform X1 [Vigna radiata var. radiata])

HSP 1 Score: 89.7 bits (221), Expect = 2.3e-15
Identity = 45/66 (68.18%), Postives = 54/66 (81.82%), Query Frame = 1


Query: 6   QISGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVFVSL-SCYRPLFIYMKGG 65
           QISGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQV   L +  R + + ++  
Sbjct: 737 QISGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRCVDLGLRTA 796

Query: 66  SLISPL 71
            +++P+
Sbjct: 797 LIVTPV 802

The following BLAST results are available for this feature:

BLAST of Csa2G076020 vs. Swiss-Prot


Match Name	E-value	Identity	Description
CHR20_ARATH	2.1e-16	63.64	Protein CHROMATIN REMODELING 20 OS=Arabidopsis thaliana GN=ATRX PE=2 SV=2	[more]
ARIP4_XENTR	1.0e-07	59.52	Helicase ARIP4 OS=Xenopus tropicalis GN=rad54l2 PE=2 SV=1	[more]
ARIP4_HUMAN	3.0e-07	57.14	Helicase ARIP4 OS=Homo sapiens GN=RAD54L2 PE=1 SV=4	[more]
ARIP4_MOUSE	3.0e-07	57.14	Helicase ARIP4 OS=Mus musculus GN=Rad54l2 PE=1 SV=1	[more]
ATRX_HUMAN	3.4e-06	54.76	Transcriptional regulator ATRX OS=Homo sapiens GN=ATRX PE=1 SV=5	[more]

BLAST of Csa2G076020 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LH69_CUCSA	5.3e-35	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G076020 PE=4 SV=1	[more]
A0A0L9THU5_PHAAN	1.6e-15	68.18	Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan845s001500 PE=4 SV=1	[more]
V7BDN3_PHAVU	1.6e-15	68.18	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_007G116600g PE=4 SV=1	[more]
A0A0S3SQ35_PHAAN	1.6e-15	68.18	Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.08G159600 PE=...	[more]
V7BGF9_PHAVU	1.6e-15	68.18	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_007G116600g PE=4 SV=1	[more]

BLAST of Csa2G076020 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G08600.3	1.2e-17	63.64	P-loop containing nucleoside triphosphate hydrolases superfamily pro...	[more]

BLAST of Csa2G076020 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700206176\|gb\|KGN61295.1\|	7.7e-35	100.00	hypothetical protein Csa_2G076020 [Cucumis sativus]	[more]
gi\|951024627\|ref\|XP_014513464.1\|	2.3e-15	68.18	PREDICTED: protein CHROMATIN REMODELING 20 isoform X2 [Vigna radiata var. radiat...	[more]
gi\|920683242\|gb\|KOM29987.1\|	2.3e-15	68.18	hypothetical protein LR48_Vigan845s001500 [Vigna angularis]	[more]
gi\|302143565\|emb\|CBI22318.3\|	2.3e-15	66.67	unnamed protein product [Vitis vinifera]	[more]
gi\|951024624\|ref\|XP_014513463.1\|	2.3e-15	68.18	PREDICTED: protein CHROMATIN REMODELING 20 isoform X1 [Vigna radiata var. radiat...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR027417	P-loop_NTPase

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005524	ATP binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa2G076020.1	Csa2G076020.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR027417	P-loop containing nucleoside triphosphate hydrolase	unknown	SSF52540	P-loop containing nucleoside triphosphate hydrolases	coord: 6..54 score: 6.6
None	No IPR available	PANTHER	PTHR10799	SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY-RELATED	coord: 6..47 score: 1.2
None	No IPR available	PANTHER	PTHR10799:SF350	TRANSCRIPTIONAL REGULATOR ATRX HOMOLOG	coord: 6..47 score: 1.2

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa2G076020	ClCG11G010390	Watermelon (Charleston Gray)	cuwcgB103
Csa2G076020	Lsi11G008990	Bottle gourd (USVL1VR-Ls)	culsiB098
Csa2G076020	MELO3C008639.2	Melon (DHL92) v3.6.1	cumedB129
Csa2G076020	Cla97C11G216610	Watermelon (97103) v2	cuwmbB109
Csa2G076020	Bhi06G000939	Wax gourd	cuwgoB139
Csa2G076020	Cucsa.178290	Cucumber (Gy14) v1	cgycuB274
Csa2G076020	CmaCh12G009740	Cucurbita maxima (Rimu)	cmacuB165
Csa2G076020	CmoCh12G009780	Cucurbita moschata (Rifu)	cmocuB150
Csa2G076020	Cp4.1LG07g08170	Cucurbita pepo (Zucchini)	cpecuB811
Csa2G076020	Carg23458	Silver-seed gourd	carcuB0514

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa2G076020	Melon (DHL92) v3.5.1	cumeB137
Csa2G076020	Watermelon (97103) v1	cuwmB156
Csa2G076020	Cucurbita pepo (Zucchini)	cpecuB098
Csa2G076020	Cucumber (Gy14) v2	cgybcuB056
Csa2G076020	Melon (DHL92) v3.6.1	cumedB135
Csa2G076020	Silver-seed gourd	carcuB0184
Csa2G076020	Cucurbita maxima (Rimu)	cmacuB786
Csa2G076020	Cucurbita moschata (Rifu)	cmocuB779