Csa2G075350 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa2G075350
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr2 : 6122495 .. 6122647 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAACCTCGCAGAATCCAAACGCAAACACCAATTCCAATCCTAATACCATATCGTCGTCAATTCCTATGCTATGGCCGACCATTGATGGCTATCTGTGTTTCTCGGAGGAAGAATTGGTGAGCTATGCCCGTAGACTCTACAAATTTTGA

mRNA sequence

ATGGAAACCTCGCAGAATCCAAACGCAAACACCAATTCCAATCCTAATACCATATCGTCGTCAATTCCTATGCTATGGCCGACCATTGATGGCTATCTGTGTTTCTCGGAGGAAGAATTGGTGAGCTATGCCCGTAGACTCTACAAATTTTGA

Coding sequence (CDS)

ATGGAAACCTCGCAGAATCCAAACGCAAACACCAATTCCAATCCTAATACCATATCGTCGTCAATTCCTATGCTATGGCCGACCATTGATGGCTATCTGTGTTTCTCGGAGGAAGAATTGGTGAGCTATGCCCGTAGACTCTACAAATTTTGA

Protein sequence

METSQNPNANTNSNPNTISSSIPMLWPTIDGYLCFSEEELVSYARRLYKF*

Homology

[Close]

BLAST of Csa2G075350 vs. Swiss-Prot
Match: PEN2_ARATH (Probable gamma-secretase subunit PEN-2 OS=Arabidopsis thaliana GN=At5g09310 PE=2 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 1.0e-06
Identity = 25/47 (53.19%), Postives = 28/47 (59.57%), Query Frame = 1


Query: 4  SQNPNANTNSNPNTISSSIPMLWPTIDGYLCFSEEELVSYARRLYKF 51
          ++NPN N N NP +   S   +WPTIDG L  +EE  V YARR YKF
Sbjct: 16 NRNPNPNPNPNPLSTIISSAQVWPTIDGPLGLTEEASVDYARRFYKF 62

[Close]

BLAST of Csa2G075350 vs. TrEMBL
Match: A0A0A0LMS0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G075350 PE=4 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 5.0e-21
Identity = 50/50 (100.00%), Postives = 50/50 (100.00%), Query Frame = 1


Query: 1  METSQNPNANTNSNPNTISSSIPMLWPTIDGYLCFSEEELVSYARRLYKF 51
          METSQNPNANTNSNPNTISSSIPMLWPTIDGYLCFSEEELVSYARRLYKF
Sbjct: 1  METSQNPNANTNSNPNTISSSIPMLWPTIDGYLCFSEEELVSYARRLYKF 50

[Close]

BLAST of Csa2G075350 vs. TrEMBL
Match: A0A0A0LK38_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G302290 PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 6.0e-14
Identity = 41/50 (82.00%), Postives = 42/50 (84.00%), Query Frame = 1


Query: 1  METSQNPNANTNSNPNTISSSIPMLWPTIDGYLCFSEEELVSYARRLYKF 51
          MET QNPNANTNSNPNTISS I +LWPTIDG L  SEEE VSYARR YKF
Sbjct: 1  METLQNPNANTNSNPNTISSPIRVLWPTIDGSLGLSEEESVSYARRFYKF 50

[Close]

BLAST of Csa2G075350 vs. TrEMBL
Match: G7JBL2_MEDTR (GDP-mannose transporter, putative OS=Medicago truncatula GN=MTR_3g096320 PE=2 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 5.4e-07
Identity = 30/50 (60.00%), Postives = 36/50 (72.00%), Query Frame = 1


Query: 1  METSQNPNANTNSNPNTISSSIPMLWPTIDGYLCFSEEELVSYARRLYKF 51
          ME+SQ+   N N NPN ++ S+P +WPTIDG L  SEEE V YARR YKF
Sbjct: 1  MESSQSHTNNPNPNPNPLALSVP-VWPTIDGPLGLSEEESVKYARRFYKF 49

[Close]

BLAST of Csa2G075350 vs. TrEMBL
Match: W9R8E6_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_020705 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 7.0e-07
Identity = 32/52 (61.54%), Postives = 37/52 (71.15%), Query Frame = 1


Query: 3  TSQNPNANTNSNP----NTISSSIPMLWPTIDGYLCFSEEELVSYARRLYKF 51
          T++NPN N N NP    N+ISSS P+ WPTIDG L  SEEE +SYARR Y F
Sbjct: 8  TTENPNPNPNPNPGRNLNSISSSSPV-WPTIDGSLGLSEEESLSYARRFYNF 58

[Close]

BLAST of Csa2G075350 vs. TrEMBL
Match: I1KBJ6_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_06G153700 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 2.1e-06
Identity = 31/53 (58.49%), Postives = 37/53 (69.81%), Query Frame = 1


Query: 1  METSQNPNANTNSNPN---TISSSIPMLWPTIDGYLCFSEEELVSYARRLYKF 51
          ME SQ  + N N NPN   +++SS+P +WPTIDG L  SEEE V YARR YKF
Sbjct: 1  MEASQGNHPNPNPNPNRNNSVASSVP-VWPTIDGPLGLSEEESVGYARRFYKF 52

[Close]

BLAST of Csa2G075350 vs. TAIR10
Match: AT5G09310.1 (AT5G09310.1 Gamma-secretase aspartyl protease complex, presenilin enhancer-2 subunit (InterPro:IPR019379))

HSP 1 Score: 53.1 bits (126), Expect = 5.7e-08
Identity = 25/47 (53.19%), Postives = 28/47 (59.57%), Query Frame = 1


Query: 4  SQNPNANTNSNPNTISSSIPMLWPTIDGYLCFSEEELVSYARRLYKF 51
          ++NPN N N NP +   S   +WPTIDG L  +EE  V YARR YKF
Sbjct: 16 NRNPNPNPNPNPLSTIISSAQVWPTIDGPLGLTEEASVDYARRFYKF 62

[Close]

BLAST of Csa2G075350 vs. NCBI nr
Match: gi|700206157|gb|KGN61276.1| (hypothetical protein Csa_2G075350 [Cucumis sativus])

HSP 1 Score: 107.5 bits (267), Expect = 7.2e-21
Identity = 50/50 (100.00%), Postives = 50/50 (100.00%), Query Frame = 1


Query: 1  METSQNPNANTNSNPNTISSSIPMLWPTIDGYLCFSEEELVSYARRLYKF 51
          METSQNPNANTNSNPNTISSSIPMLWPTIDGYLCFSEEELVSYARRLYKF
Sbjct: 1  METSQNPNANTNSNPNTISSSIPMLWPTIDGYLCFSEEELVSYARRLYKF 50

[Close]

BLAST of Csa2G075350 vs. NCBI nr
Match: gi|659121942|ref|XP_008460893.1| (PREDICTED: probable gamma-secretase subunit PEN-2 [Cucumis melo])

HSP 1 Score: 86.7 bits (213), Expect = 1.3e-14
Identity = 41/50 (82.00%), Postives = 43/50 (86.00%), Query Frame = 1


Query: 1  METSQNPNANTNSNPNTISSSIPMLWPTIDGYLCFSEEELVSYARRLYKF 51
          METS NPNANTNSNPNTI+S IP+LWPTIDG L  SEEE VSYARR YKF
Sbjct: 1  METSHNPNANTNSNPNTITSPIPVLWPTIDGSLGLSEEESVSYARRFYKF 50

[Close]

BLAST of Csa2G075350 vs. NCBI nr
Match: gi|778670219|ref|XP_011649406.1| (PREDICTED: probable gamma-secretase subunit PEN-2 [Cucumis sativus])

HSP 1 Score: 84.0 bits (206), Expect = 8.5e-14
Identity = 41/50 (82.00%), Postives = 42/50 (84.00%), Query Frame = 1


Query: 1  METSQNPNANTNSNPNTISSSIPMLWPTIDGYLCFSEEELVSYARRLYKF 51
          MET QNPNANTNSNPNTISS I +LWPTIDG L  SEEE VSYARR YKF
Sbjct: 1  METLQNPNANTNSNPNTISSPIRVLWPTIDGSLGLSEEESVSYARRFYKF 50

[Close]

BLAST of Csa2G075350 vs. NCBI nr
Match: gi|357464679|ref|XP_003602621.1| (GDP-mannose transporter, putative [Medicago truncatula])

HSP 1 Score: 60.8 bits (146), Expect = 7.7e-07
Identity = 30/50 (60.00%), Postives = 36/50 (72.00%), Query Frame = 1


Query: 1  METSQNPNANTNSNPNTISSSIPMLWPTIDGYLCFSEEELVSYARRLYKF 51
          ME+SQ+   N N NPN ++ S+P +WPTIDG L  SEEE V YARR YKF
Sbjct: 1  MESSQSHTNNPNPNPNPLALSVP-VWPTIDGPLGLSEEESVKYARRFYKF 49

[Close]

BLAST of Csa2G075350 vs. NCBI nr
Match: gi|703078290|ref|XP_010090846.1| (hypothetical protein L484_020705 [Morus notabilis])

HSP 1 Score: 60.5 bits (145), Expect = 1.0e-06
Identity = 32/52 (61.54%), Postives = 37/52 (71.15%), Query Frame = 1


Query: 3  TSQNPNANTNSNP----NTISSSIPMLWPTIDGYLCFSEEELVSYARRLYKF 51
          T++NPN N N NP    N+ISSS P+ WPTIDG L  SEEE +SYARR Y F
Sbjct: 8  TTENPNPNPNPNPGRNLNSISSSSPV-WPTIDGSLGLSEEESLSYARRFYNF 58

The following BLAST results are available for this feature:

BLAST of Csa2G075350 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PEN2_ARATH	1.0e-06	53.19	Probable gamma-secretase subunit PEN-2 OS=Arabidopsis thaliana GN=At5g09310 PE=2...	[more]

BLAST of Csa2G075350 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LMS0_CUCSA	5.0e-21	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G075350 PE=4 SV=1	[more]
A0A0A0LK38_CUCSA	6.0e-14	82.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G302290 PE=4 SV=1	[more]
G7JBL2_MEDTR	5.4e-07	60.00	GDP-mannose transporter, putative OS=Medicago truncatula GN=MTR_3g096320 PE=2 SV...	[more]
W9R8E6_9ROSA	7.0e-07	61.54	Uncharacterized protein OS=Morus notabilis GN=L484_020705 PE=4 SV=1	[more]
I1KBJ6_SOYBN	2.1e-06	58.49	Uncharacterized protein OS=Glycine max GN=GLYMA_06G153700 PE=4 SV=1	[more]

BLAST of Csa2G075350 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G09310.1	5.7e-08	53.19	Gamma-secretase aspartyl protease complex, presenilin enhancer-2 sub...	[more]

BLAST of Csa2G075350 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700206157\|gb\|KGN61276.1\|	7.2e-21	100.00	hypothetical protein Csa_2G075350 [Cucumis sativus]	[more]
gi\|659121942\|ref\|XP_008460893.1\|	1.3e-14	82.00	PREDICTED: probable gamma-secretase subunit PEN-2 [Cucumis melo]	[more]
gi\|778670219\|ref\|XP_011649406.1\|	8.5e-14	82.00	PREDICTED: probable gamma-secretase subunit PEN-2 [Cucumis sativus]	[more]
gi\|357464679\|ref\|XP_003602621.1\|	7.7e-07	60.00	GDP-mannose transporter, putative [Medicago truncatula]	[more]
gi\|703078290\|ref\|XP_010090846.1\|	1.0e-06	61.54	hypothetical protein L484_020705 [Morus notabilis]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa2G075350.1	Csa2G075350.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa2G075350	Cucurbita moschata (Rifu)	cmocuB150
Csa2G075350	Cucurbita moschata (Rifu)	cmocuB779
Csa2G075350	Melon (DHL92) v3.5.1	cumeB133
Csa2G075350	Watermelon (Charleston Gray)	cuwcgB103
Csa2G075350	Watermelon (97103) v1	cuwmB156
Csa2G075350	Cucurbita pepo (Zucchini)	cpecuB098
Csa2G075350	Cucurbita pepo (Zucchini)	cpecuB811
Csa2G075350	Bottle gourd (USVL1VR-Ls)	culsiB098
Csa2G075350	Cucumber (Gy14) v2	cgybcuB056
Csa2G075350	Melon (DHL92) v3.6.1	cumedB132
Csa2G075350	Silver-seed gourd	carcuB0184
Csa2G075350	Silver-seed gourd	carcuB0736
Csa2G075350	Watermelon (97103) v2	cuwmbB109
Csa2G075350	Wax gourd	cuwgoB139
Csa2G075350	Cucumber (Gy14) v1	cgycuB274
Csa2G075350	Cucurbita maxima (Rimu)	cmacuB165
Csa2G075350	Cucurbita maxima (Rimu)	cmacuB786