Csa2G072470 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa2G072470
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr2 : 5611735 .. 5611923 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTGAGGGACGAATCATGGTAAGAGATTTGTTTATTGATTTGATGATGGATCTGAACCTGACGGAAGAACTCAACAACATGAGGTATGTAGTCCCAGCTCCGTTGAACTGTGGTGGCATTTTCATGTTGAAGCCTAATCTGCGTGGAAAATCTTGGCCACTATATCACAATCAGGATGTACCATAG

mRNA sequence

ATGGTTGAGGGACGAATCATGGTAAGAGATTTGTTTATTGATTTGATGATGGATCTGAACCTGACGGAAGAACTCAACAACATGAGGTATGTAGTCCCAGCTCCGTTGAACTGTGGTGGCATTTTCATGTTGAAGCCTAATCTGCGTGGAAAATCTTGGCCACTATATCACAATCAGGATGTACCATAG

Coding sequence (CDS)

ATGGTTGAGGGACGAATCATGGTAAGAGATTTGTTTATTGATTTGATGATGGATCTGAACCTGACGGAAGAACTCAACAACATGAGGTATGTAGTCCCAGCTCCGTTGAACTGTGGTGGCATTTTCATGTTGAAGCCTAATCTGCGTGGAAAATCTTGGCCACTATATCACAATCAGGATGTACCATAG

Protein sequence

MVEGRIMVRDLFIDLMMDLNLTEELNNMRYVVPAPLNCGGIFMLKPNLRGKSWPLYHNQDVP*
Homology
[Close]
BLAST of Csa2G072470 vs. TrEMBL
Match: A0A0A0LHH4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G072470 PE=4 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 1.1e-28
Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = 1 

Query: 1  MVEGRIMVRDLFIDLMMDLNLTEELNNMRYVVPAPLNCGGIFMLKPNLRGKSWPLYHNQD 60
          MVEGRIMVRDLFIDLMMDLNLTEELNNMRYVVPAPLNCGGIFMLKPNLRGKSWPLYHNQD
Sbjct: 1  MVEGRIMVRDLFIDLMMDLNLTEELNNMRYVVPAPLNCGGIFMLKPNLRGKSWPLYHNQD 60

Query: 61 VP 63
          VP
Sbjct: 61 VP 62

[Close]
BLAST of Csa2G072470 vs. NCBI nr
Match: gi|700206114|gb|KGN61233.1| (hypothetical protein Csa_2G072470 [Cucumis sativus])

HSP 1 Score: 133.3 bits (334), Expect = 1.5e-28
Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = 1 

Query: 1  MVEGRIMVRDLFIDLMMDLNLTEELNNMRYVVPAPLNCGGIFMLKPNLRGKSWPLYHNQD 60
          MVEGRIMVRDLFIDLMMDLNLTEELNNMRYVVPAPLNCGGIFMLKPNLRGKSWPLYHNQD
Sbjct: 1  MVEGRIMVRDLFIDLMMDLNLTEELNNMRYVVPAPLNCGGIFMLKPNLRGKSWPLYHNQD 60

Query: 61 VP 63
          VP
Sbjct: 61 VP 62

The following BLAST results are available for this feature:
BLAST of Csa2G072470 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LHH4_CUCSA1.1e-28100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_2G072470 PE=4 SV=1[more]
BLAST of Csa2G072470 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700206114|gb|KGN61233.1|1.5e-28100.00hypothetical protein Csa_2G072470 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa2G072470.1Csa2G072470.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa2G072470CSPI02G06940Wild cucumber (PI 183967)cpicuB065
Csa2G072470CsGy2G007160Cucumber (Gy14) v2cgybcuB056
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa2G072470Melon (DHL92) v3.5.1cumeB133
Csa2G072470Watermelon (Charleston Gray)cuwcgB103
Csa2G072470Watermelon (97103) v1cuwmB163
Csa2G072470Cucurbita pepo (Zucchini)cpecuB098
Csa2G072470Cucurbita pepo (Zucchini)cpecuB811
Csa2G072470Bottle gourd (USVL1VR-Ls)culsiB098
Csa2G072470Melon (DHL92) v3.6.1cumedB132
Csa2G072470Silver-seed gourdcarcuB0005
Csa2G072470Silver-seed gourdcarcuB0184
Csa2G072470Watermelon (97103) v2cuwmbB109
Csa2G072470Cucumber (Gy14) v1cgycuB274
Csa2G072470Cucurbita maxima (Rimu)cmacuB165
Csa2G072470Cucurbita maxima (Rimu)cmacuB786
Csa2G072470Cucurbita moschata (Rifu)cmocuB150
Csa2G072470Cucurbita moschata (Rifu)cmocuB779