Csa2G072430 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa2G072430
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionDefensin-like protein 51
LocationChr2 : 5577280 .. 5577599 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAACCCAAAAGCTTGCTACAATATCAATTGTTGTTTTGGTGATATTCCCATGTATTGTATCGACAAGTATGCTCTTTTAACTCATAATTCCTCTCATTTCACAAAACTGTTTTTGCTAGAACAATGTTTAATACAATGTTATTTTTGGTAATATGCAGCAAAAGGAGACGTTTTGAATGTGCATTGTGTTCGACCATGCTATGATACTTATGATGACGAGTCATGTTATAATGATTGCATTCGAGAGAATCTTGGTGCTGGGTTTTGTTACCCAAAGCTACCTAGCACTGATAAAGATTGTTGTTGCAATGATTGA

mRNA sequence

ATGGCAACCCAAAAGCTTGCTACAATATCAATTGTTGTTTTGGTGATATTCCCATGTATTGTATCGACAACAAAAGGAGACGTTTTGAATGTGCATTGTGTTCGACCATGCTATGATACTTATGATGACGAGTCATGTTATAATGATTGCATTCGAGAGAATCTTGGTGCTGGGTTTTGTTACCCAAAGCTACCTAGCACTGATAAAGATTGTTGTTGCAATGATTGA

Coding sequence (CDS)

ATGGCAACCCAAAAGCTTGCTACAATATCAATTGTTGTTTTGGTGATATTCCCATGTATTGTATCGACAACAAAAGGAGACGTTTTGAATGTGCATTGTGTTCGACCATGCTATGATACTTATGATGACGAGTCATGTTATAATGATTGCATTCGAGAGAATCTTGGTGCTGGGTTTTGTTACCCAAAGCTACCTAGCACTGATAAAGATTGTTGTTGCAATGATTGA

Protein sequence

MATQKLATISIVVLVIFPCIVSTTKGDVLNVHCVRPCYDTYDDESCYNDCIRENLGAGFCYPKLPSTDKDCCCND*
Homology
[Close]
BLAST of Csa2G072430 vs. TrEMBL
Match: A0A0A0LJG5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G072430 PE=4 SV=1)

HSP 1 Score: 167.5 bits (423), Expect = 6.1e-39
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 1 

Query: 1  MATQKLATISIVVLVIFPCIVSTTKGDVLNVHCVRPCYDTYDDESCYNDCIRENLGAGFC 60
          MATQKLATISIVVLVIFPCIVSTTKGDVLNVHCVRPCYDTYDDESCYNDCIRENLGAGFC
Sbjct: 1  MATQKLATISIVVLVIFPCIVSTTKGDVLNVHCVRPCYDTYDDESCYNDCIRENLGAGFC 60

Query: 61 YPKLPSTDKDCCCND 76
          YPKLPSTDKDCCCND
Sbjct: 61 YPKLPSTDKDCCCND 75

[Close]
BLAST of Csa2G072430 vs. TrEMBL
Match: A0A0A0LHG9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G071930 PE=4 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 5.3e-35
Identity = 69/74 (93.24%), Postives = 71/74 (95.95%), Query Frame = 1 

Query: 1  MATQKLATISIVVLVIFPCIVSTTKGDVLNVHCVRPCYDTYDDESCYNDCIRENLGAGFC 60
          MATQKLATISIVVL+IF CI STTKGDVLNVHCVRPC DTYDDESCYNDCI+ENLGAGFC
Sbjct: 1  MATQKLATISIVVLMIFACIASTTKGDVLNVHCVRPCSDTYDDESCYNDCIQENLGAGFC 60

Query: 61 YPKLPSTDKDCCCN 75
          YPKLPSTDKDCCCN
Sbjct: 61 YPKLPSTDKDCCCN 74

[Close]
BLAST of Csa2G072430 vs. TrEMBL
Match: A0A0A0LKF5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G070930 PE=4 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 1.5e-24
Identity = 49/52 (94.23%), Postives = 50/52 (96.15%), Query Frame = 1 

Query: 23 TTKGDVLNVHCVRPCYDTYDDESCYNDCIRENLGAGFCYPKLPSTDKDCCCN 75
          T KGD+LNVHCVRPC DTYDDESCYNDCIRENLGAGFCYPKLPSTDKDCCCN
Sbjct: 2  TAKGDILNVHCVRPCSDTYDDESCYNDCIRENLGAGFCYPKLPSTDKDCCCN 53

[Close]
BLAST of Csa2G072430 vs. TrEMBL
Match: A0A0A0L1R8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G339000 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 1.0e-09
Identity = 37/77 (48.05%), Postives = 47/77 (61.04%), Query Frame = 1 

Query: 1  MATQKLATISIVVLVIFPCIVSTTKGDVLNVHCVRPCYDTYDDESCYNDCIRENLGAGFC 60
          M TQKL  +S++V V F C  S+ +GD L  +CV PC +   D  C   CI ++ GAGFC
Sbjct: 1  MVTQKLFIVSMLVAVTFSCFASSMEGDDL-WNCVIPCSNNNGDILCNTACIEQDEGAGFC 60

Query: 61 YPKLP--STDKDCCCND 76
           PKLP  S  K CCCN+
Sbjct: 61 VPKLPGISDMKVCCCNN 76

[Close]
BLAST of Csa2G072430 vs. NCBI nr
Match: gi|700206110|gb|KGN61229.1| (hypothetical protein Csa_2G072430 [Cucumis sativus])

HSP 1 Score: 167.5 bits (423), Expect = 8.8e-39
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 1 

Query: 1  MATQKLATISIVVLVIFPCIVSTTKGDVLNVHCVRPCYDTYDDESCYNDCIRENLGAGFC 60
          MATQKLATISIVVLVIFPCIVSTTKGDVLNVHCVRPCYDTYDDESCYNDCIRENLGAGFC
Sbjct: 1  MATQKLATISIVVLVIFPCIVSTTKGDVLNVHCVRPCYDTYDDESCYNDCIRENLGAGFC 60

Query: 61 YPKLPSTDKDCCCND 76
          YPKLPSTDKDCCCND
Sbjct: 61 YPKLPSTDKDCCCND 75

[Close]
BLAST of Csa2G072430 vs. NCBI nr
Match: gi|700206109|gb|KGN61228.1| (hypothetical protein Csa_2G071930 [Cucumis sativus])

HSP 1 Score: 154.5 bits (389), Expect = 7.7e-35
Identity = 69/74 (93.24%), Postives = 71/74 (95.95%), Query Frame = 1 

Query: 1  MATQKLATISIVVLVIFPCIVSTTKGDVLNVHCVRPCYDTYDDESCYNDCIRENLGAGFC 60
          MATQKLATISIVVL+IF CI STTKGDVLNVHCVRPC DTYDDESCYNDCI+ENLGAGFC
Sbjct: 1  MATQKLATISIVVLMIFACIASTTKGDVLNVHCVRPCSDTYDDESCYNDCIQENLGAGFC 60

Query: 61 YPKLPSTDKDCCCN 75
          YPKLPSTDKDCCCN
Sbjct: 61 YPKLPSTDKDCCCN 74

[Close]
BLAST of Csa2G072430 vs. NCBI nr
Match: gi|700206108|gb|KGN61227.1| (hypothetical protein Csa_2G070930 [Cucumis sativus])

HSP 1 Score: 119.8 bits (299), Expect = 2.1e-24
Identity = 49/52 (94.23%), Postives = 50/52 (96.15%), Query Frame = 1 

Query: 23 TTKGDVLNVHCVRPCYDTYDDESCYNDCIRENLGAGFCYPKLPSTDKDCCCN 75
          T KGD+LNVHCVRPC DTYDDESCYNDCIRENLGAGFCYPKLPSTDKDCCCN
Sbjct: 2  TAKGDILNVHCVRPCSDTYDDESCYNDCIRENLGAGFCYPKLPSTDKDCCCN 53

[Close]
BLAST of Csa2G072430 vs. NCBI nr
Match: gi|700199339|gb|KGN54497.1| (hypothetical protein Csa_4G339000 [Cucumis sativus])

HSP 1 Score: 70.5 bits (171), Expect = 1.5e-09
Identity = 37/77 (48.05%), Postives = 47/77 (61.04%), Query Frame = 1 

Query: 1  MATQKLATISIVVLVIFPCIVSTTKGDVLNVHCVRPCYDTYDDESCYNDCIRENLGAGFC 60
          M TQKL  +S++V V F C  S+ +GD L  +CV PC +   D  C   CI ++ GAGFC
Sbjct: 1  MVTQKLFIVSMLVAVTFSCFASSMEGDDL-WNCVIPCSNNNGDILCNTACIEQDEGAGFC 60

Query: 61 YPKLP--STDKDCCCND 76
           PKLP  S  K CCCN+
Sbjct: 61 VPKLPGISDMKVCCCNN 76

The following BLAST results are available for this feature:
BLAST of Csa2G072430 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LJG5_CUCSA6.1e-39100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_2G072430 PE=4 SV=1[more]
A0A0A0LHG9_CUCSA5.3e-3593.24Uncharacterized protein OS=Cucumis sativus GN=Csa_2G071930 PE=4 SV=1[more]
A0A0A0LKF5_CUCSA1.5e-2494.23Uncharacterized protein OS=Cucumis sativus GN=Csa_2G070930 PE=4 SV=1[more]
A0A0A0L1R8_CUCSA1.0e-0948.05Uncharacterized protein OS=Cucumis sativus GN=Csa_4G339000 PE=4 SV=1[more]
BLAST of Csa2G072430 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700206110|gb|KGN61229.1|8.8e-39100.00hypothetical protein Csa_2G072430 [Cucumis sativus][more]
gi|700206109|gb|KGN61228.1|7.7e-3593.24hypothetical protein Csa_2G071930 [Cucumis sativus][more]
gi|700206108|gb|KGN61227.1|2.1e-2494.23hypothetical protein Csa_2G070930 [Cucumis sativus][more]
gi|700199339|gb|KGN54497.1|1.5e-0948.05hypothetical protein Csa_4G339000 [Cucumis sativus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa2G072430.1Csa2G072430.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePRODOMPD864278coord: 20..73
score: 5.

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa2G072430Watermelon (97103) v2cuwmbB109
Csa2G072430Cucumber (Gy14) v1cgycuB274
Csa2G072430Cucurbita maxima (Rimu)cmacuB165
Csa2G072430Cucurbita maxima (Rimu)cmacuB786
Csa2G072430Cucurbita moschata (Rifu)cmocuB150
Csa2G072430Cucurbita moschata (Rifu)cmocuB779
Csa2G072430Melon (DHL92) v3.5.1cumeB133
Csa2G072430Watermelon (Charleston Gray)cuwcgB103
Csa2G072430Watermelon (97103) v1cuwmB163
Csa2G072430Cucurbita pepo (Zucchini)cpecuB098
Csa2G072430Cucurbita pepo (Zucchini)cpecuB811
Csa2G072430Bottle gourd (USVL1VR-Ls)culsiB098
Csa2G072430Cucumber (Gy14) v2cgybcuB056
Csa2G072430Melon (DHL92) v3.6.1cumedB132
Csa2G072430Silver-seed gourdcarcuB0005
Csa2G072430Silver-seed gourdcarcuB0184