Csa2G062640 (gene) Cucumber (Chinese Long) v2

NameCsa2G062640
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr2 : 5201407 .. 5201637 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAAGGCCAATTGCTGCTACTATTGGAGATGTTACCACGTCCATCCCGGGGGGCTTAAGTTTGCTTTCTCTCATTCTTCTATCCATCTCTCTCCTATCAATGATAATATTTGCTTGTAGCAACTTCTTTAATACTCGAAGGAGAAGAGGTGGCGATGATGGTGGTGCAGGTGGTTGTGCTTGTGGTGGAGGAGGCTGCGGTGGTGGAGGTTGCGGTGGTGGAGATTGA

mRNA sequence

ATGGGAAGGCCAATTGCTGCTACTATTGGAGATGTTACCACGTCCATCCCGGGGGGCTTAAGTTTGCTTTCTCTCATTCTTCTATCCATCTCTCTCCTATCAATGATAATATTTGCTTGTAGCAACTTCTTTAATACTCGAAGGAGAAGAGGTGGCGATGATGGTGGTGCAGGTGGTTGTGCTTGTGGTGGAGGAGGCTGCGGTGGTGGAGGTTGCGGTGGTGGAGATTGA

Coding sequence (CDS)

ATGGGAAGGCCAATTGCTGCTACTATTGGAGATGTTACCACGTCCATCCCGGGGGGCTTAAGTTTGCTTTCTCTCATTCTTCTATCCATCTCTCTCCTATCAATGATAATATTTGCTTGTAGCAACTTCTTTAATACTCGAAGGAGAAGAGGTGGCGATGATGGTGGTGCAGGTGGTTGTGCTTGTGGTGGAGGAGGCTGCGGTGGTGGAGGTTGCGGTGGTGGAGATTGA

Protein sequence

MGRPIAATIGDVTTSIPGGLSLLSLILLSISLLSMIIFACSNFFNTRRRRGGDDGGAGGCACGGGGCGGGGCGGGD*
BLAST of Csa2G062640 vs. NCBI nr
Match: gi|985434705|ref|XP_015382723.1| (PREDICTED: loricrin-like [Citrus sinensis])

HSP 1 Score: 67.0 bits (162), Expect = 1.6e-08
Identity = 39/92 (42.39%), Postives = 51/92 (55.43%), Query Frame = 1

Query: 1  MGRPIAATIGDV-TTSIPGGLSLLSLILLSISLLSMIIFACSNFFNTRRRR--------- 60
          M R +    G V   S  GG+  L +++ S+S++SM+IFAC +  N ++RR         
Sbjct: 1  MARELLVLAGAVHAESYFGGILFLCMVVASVSMISMVIFACGDDSNPKKRRTNYGGGGCG 60

Query: 61 ----GGDDGGAGGCAC---GGGGCGGGGCGGG 76
              GG  GG GG AC   GGGGCGGGG GGG
Sbjct: 61 GCGGGGACGGGGGGACGGGGGGGCGGGGGGGG 92

BLAST of Csa2G062640 vs. NCBI nr
Match: gi|985434705|ref|XP_015382723.1| (PREDICTED: loricrin-like [Citrus sinensis])

HSP 1 Score: 51.2 bits (121), Expect = 9.3e-04
Identity = 33/103 (32.04%), Postives = 45/103 (43.69%), Query Frame = 1

Query: 1   MGRPIAATIGDV-TTSIPGGLSLLSLILLSISLLSMIIFACSNFFNTRRRR--------- 60
           M R +    G V   S  GG+  L +++ S+S++SM+IFAC +  N ++RR         
Sbjct: 1   MARELLVLAGAVHAESYFGGILFLCMVVASVSMISMVIFACGDDSNPKKRRTNYGGGGCG 60

Query: 61  ----------------------GGDDGGAGGCACGGGGCGGGG 72
                                 G   GG GG   GGGGCGGGG
Sbjct: 61  GCGGGGACGGGGGGACGGGGGGGCGGGGGGGGGGGGGGCGGGG 103


HSP 2 Score: 65.1 bits (157), Expect = 6.2e-08
Identity = 33/76 (43.42%), Postives = 50/76 (65.79%), Query Frame = 1

Query: 9  IGDVTTSIPGG--LSLLSLILLSISLLSMIIFACSNFFNTRRR----RGGDDGGAGGC-- 68
          +GD  ++I G   + ++ ++++SI ++SM+IFAC +  N R++     GG +GG GGC  
Sbjct: 8  VGDGGSAIEGSGLMIMVGMVVVSILMISMVIFACGDSSNGRKKSHWVSGGHNGGGGGCGG 67

Query: 69 -ACGGGGCGGGGCGGG 76
             GGGGCGGGG GGG
Sbjct: 68 DGGGGGGCGGGGDGGG 83

BLAST of Csa2G062640 vs. NCBI nr
Match: gi|697095740|ref|XP_009612867.1| (PREDICTED: acanthoscurrin-1-like [Nicotiana tomentosiformis])

HSP 1 Score: 64.7 bits (156), Expect = 8.1e-08
Identity = 35/94 (37.23%), Postives = 51/94 (54.26%), Query Frame = 1

Query: 9   IGDVTTSIPGG--LSLLSLILLSISLLSMIIFACSNFFNTRRRR--------------GG 68
           +GD  ++I G   + ++ ++++SI ++SM+IFAC +  N R++               GG
Sbjct: 8   VGDGGSAIEGSGLMIMVGMVVVSILMISMVIFACGDSSNGRKKSHWVSGGHNGGGGGCGG 67

Query: 69  DDGGAGGCA-----------CGGGGCGGGGCGGG 76
           D GG GGC            CGGGG GGGGCGGG
Sbjct: 68  DGGGGGGCGGGGDGGGGGGGCGGGGGGGGGCGGG 101


HSP 2 Score: 37.4 bits (85), Expect = 1.4e+01
Identity = 14/19 (73.68%), Postives = 14/19 (73.68%), Query Frame = 1

Query: 51  GGDDGGAGGCACGGGGCGG 70
           GG  GG GGC  GGGGCGG
Sbjct: 89  GGGGGGGGGCGGGGGGCGG 107


HSP 3 Score: 65.1 bits (157), Expect = 6.2e-08
Identity = 32/71 (45.07%), Postives = 43/71 (60.56%), Query Frame = 1

Query: 18 GGLSLLSLILLSISLLSMIIFACSNFFNTRRRR------GGDDG-------GAGGCACGG 76
          GG+  L +++ S S++SM+IFAC +  + ++ R      GG  G       G GGC  GG
Sbjct: 19 GGIFSLCMVVASFSMISMVIFACGDDGSPKKNRTSGGFVGGGAGLGGLGGAGGGGCGGGG 78

BLAST of Csa2G062640 vs. NCBI nr
Match: gi|567908975|ref|XP_006446801.1| (hypothetical protein CICLE_v10017260mg [Citrus clementina])

HSP 1 Score: 61.6 bits (148), Expect = 6.9e-07
Identity = 31/83 (37.35%), Postives = 42/83 (50.60%), Query Frame = 1

Query: 18  GGLSLLSLILLSISLLSMIIFACSNFFNTRRRR-------------------------GG 76
           GG+  L +++ S S++SM+IFAC +  + ++ R                         GG
Sbjct: 19  GGIFSLCMVVASFSMISMVIFACGDDGSPKKNRTSGGFVGGGAGLGGLGGAGGGGCGGGG 78


HSP 2 Score: 43.1 bits (100), Expect = 2.5e-01
Identity = 19/25 (76.00%), Postives = 19/25 (76.00%), Query Frame = 1

Query: 51  GGDDGGAGGCACGGGGCGGGGCGGG 76
           GG  GG GG  CGGGGCGGGG GGG
Sbjct: 84  GGCGGGGGG--CGGGGCGGGGGGGG 106


HSP 3 Score: 63.2 bits (152), Expect = 2.4e-07
Identity = 33/83 (39.76%), Postives = 49/83 (59.04%), Query Frame = 1

Query: 1  MGRPIAATIG----DVTTSIPGGLSLLSLILLSISLLSMIIFACSNFFNTRRRR----GG 60
          +GR   A  G    DV+ S+ G   +  + + ++++++ ++F C++    RRRR    GG
Sbjct: 10 LGRGFTAAAGGSVPDVSRSVVG---IALVFVAAVAIVAFVVFNCADGSGGRRRRTGGGGG 69

Query: 61 DDGGAGGCACGGGGCGGGGCGGG 76
            GG GGC  GGGG GGGGCGGG
Sbjct: 70 GGGGGGGCGGGGGGGGGGGCGGG 89

BLAST of Csa2G062640 vs. NCBI nr
Match: gi|920682155|gb|KOM28927.1| (hypothetical protein LR48_Vigan618s000900 [Vigna angularis])

HSP 1 Score: 60.8 bits (146), Expect = 1.2e-06
Identity = 33/62 (53.23%), Postives = 42/62 (67.74%), Query Frame = 1

Query: 22 LLSLILLSISLLSMIIFAC-SNFFNTRRRR-------GGDDGGAGGCACGGGGCGGGGCG 76
          L  +I+ S+S++S+IIFAC  +  +T+RRR       GG  GG GG  CGGGG GGGGCG
Sbjct: 29 LFLMIIASLSIISIIIFACGDDNKDTKRRRGDGGGGDGGGGGGGGGGGCGGGG-GGGGCG 88

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
gi|985434705|ref|XP_015382723.1|1.6e-0842.39PREDICTED: loricrin-like [Citrus sinensis][more]
gi|985434705|ref|XP_015382723.1|9.3e-0432.04PREDICTED: loricrin-like [Citrus sinensis][more]
gi|697095740|ref|XP_009612867.1|8.1e-0837.23PREDICTED: acanthoscurrin-1-like [Nicotiana tomentosiformis][more]
gi|567908975|ref|XP_006446801.1|6.9e-0737.35hypothetical protein CICLE_v10017260mg [Citrus clementina][more]
gi|920682155|gb|KOM28927.1|1.2e-0653.23hypothetical protein LR48_Vigan618s000900 [Vigna angularis][more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa2G062640.1Csa2G062640.1mRNA


The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None