Csa2G055060 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa2G055060
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr2 : 4210988 .. 4212024 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTGATATCAAGAGCCGTTTGAATCTGGACAATGTTTTAGTAGTTACCCGACGCTTCTTTCATGACGATTGGAACAAAATTCTAAGCAATCAATGGGAACAACTTAATGAAGGTTTTTCTTATAGACCCTTTCATTCTGACAAAGTCCTTGTGCACTTTCAAGAACCCTATTTAGCAAAGCTTCCCTGTAGAAATAAAGGCTGGTCAACCGTTGGAAATTTCTTTGTCAAATTTGAAATGTGGTCCCCTTCATCCCATGCAGGACGGAGGCTCTTATTCCAAGCTATGGAGGTTGGACAAAATTTAGGGGTATCCCTCTTCACTTGTGGAATATGGAAACTTTCTCTCAAATTGGAAATGCATGTGGGGGTTTGCTACAGGTGGCATCTGAAACGAAACTGGGTCTAAACCTGGCCTATTTTTGTCAATTCCCCAACCTGATTGAAGCTAAAGTAAAAGTTAAATATAATTACCCAGGCTTCGTTCCGGCATACATTCGTATTACAGATGACTTGGGTAACAGCTTTCCTATTCAAATTGTATCTCACACTCAAGGCAAATGGTTGGTAGAAAGAAACGTGAGGAAGCATGGGATCTTTAAATCTCAAGCTACCACTAGTTTTGGTGAATTCAATCCAAATGCAAAACAATTTACGTTCATCGGTAGCGAAGGTCTGCCACCGAAACATCCAACTTCGAGCAAGAATAAGGTTTTAAATGATGAAATAAAAAATGGTTTAAATGCAAGTAATTATGAATATTTATTTCCAGCTTCTCAAGAAATCTCTAAATCATGCCCCATTCAATGTGAAAGATTAAGATCTTGTCAAGATTAATTCACCAATGACACAGCTATTAATGACATGTTGAATAAAGGCAAGAGTCCCTTATTGCATCAATTTGAAATTTCACTATAAGAATTCGGGGTTTTATCGACGCAGAAATGTGTTGCAAAAAAGCAATTATGCGTGAGCACAACCTTCACTGATGCAGAGAAGCATGTCGACGCAGGCGTCGTAAATGACGCGTTGTAA

mRNA sequence

ATGGTTGATATCAAGAGCCGCTTCGTTCCGGCATACATTCGTATTACAGATGACTTGGGTAACAGCTTTCCTATTCAAATTGTATCTCACACTCAAGGCAAATGGTTGGTAGAAAGAAACGTGAGGAAGCATGGGATCTTTAAATCTCAAGCTACCACTAGTTTTGGTGAATTCAATCCAAATGCAAAACAATTTACGTTCATCGGTAGCGAAGGTCTGCCACCGAAACATCCAACTTCGAGCAAGAATAAGGTTTTAAATGATGAAATAAAAAATGGTTTAAATGCAAAATTCGGGGTTTTATCGACGCAGAAATGTGTTGCAAAAAAGCAATTATGCGTGAGCACAACCTTCACTGATGCAGAGAAGCATGTCGACGCAGGCGTCGTAAATGACGCGTTGTAA

Coding sequence (CDS)

ATGGTTGATATCAAGAGCCGCTTCGTTCCGGCATACATTCGTATTACAGATGACTTGGGTAACAGCTTTCCTATTCAAATTGTATCTCACACTCAAGGCAAATGGTTGGTAGAAAGAAACGTGAGGAAGCATGGGATCTTTAAATCTCAAGCTACCACTAGTTTTGGTGAATTCAATCCAAATGCAAAACAATTTACGTTCATCGGTAGCGAAGGTCTGCCACCGAAACATCCAACTTCGAGCAAGAATAAGGTTTTAAATGATGAAATAAAAAATGGTTTAAATGCAAAATTCGGGGTTTTATCGACGCAGAAATGTGTTGCAAAAAAGCAATTATGCGTGAGCACAACCTTCACTGATGCAGAGAAGCATGTCGACGCAGGCGTCGTAAATGACGCGTTGTAA

Protein sequence

MVDIKSRFVPAYIRITDDLGNSFPIQIVSHTQGKWLVERNVRKHGIFKSQATTSFGEFNPNAKQFTFIGSEGLPPKHPTSSKNKVLNDEIKNGLNAKFGVLSTQKCVAKKQLCVSTTFTDAEKHVDAGVVNDAL*
Homology
[Close]
BLAST of Csa2G055060 vs. TrEMBL
Match: A0A0A0LH82_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G055060 PE=4 SV=1)

HSP 1 Score: 273.5 bits (698), Expect = 1.4e-70
Identity = 134/134 (100.00%), Postives = 134/134 (100.00%), Query Frame = 1 

Query: 1   MVDIKSRFVPAYIRITDDLGNSFPIQIVSHTQGKWLVERNVRKHGIFKSQATTSFGEFNP 60
           MVDIKSRFVPAYIRITDDLGNSFPIQIVSHTQGKWLVERNVRKHGIFKSQATTSFGEFNP
Sbjct: 1   MVDIKSRFVPAYIRITDDLGNSFPIQIVSHTQGKWLVERNVRKHGIFKSQATTSFGEFNP 60

Query: 61  NAKQFTFIGSEGLPPKHPTSSKNKVLNDEIKNGLNAKFGVLSTQKCVAKKQLCVSTTFTD 120
           NAKQFTFIGSEGLPPKHPTSSKNKVLNDEIKNGLNAKFGVLSTQKCVAKKQLCVSTTFTD
Sbjct: 61  NAKQFTFIGSEGLPPKHPTSSKNKVLNDEIKNGLNAKFGVLSTQKCVAKKQLCVSTTFTD 120

Query: 121 AEKHVDAGVVNDAL 135
           AEKHVDAGVVNDAL
Sbjct: 121 AEKHVDAGVVNDAL 134

[Close]
BLAST of Csa2G055060 vs. TrEMBL
Match: E5GB30_CUCME (Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 3.8e-07
Identity = 30/78 (38.46%), Postives = 46/78 (58.97%), Query Frame = 1 

Query: 3   DIKSRFVPAYIRITDDLGNSFPIQIVSHTQGKWLVERNVRKHGIFKSQATTSFGEFNPNA 62
           D  S F+PA+I++ D    S+ IQ++  T+GKW + RN   HG F  +A   F EFN N+
Sbjct: 265 DNYSGFIPAFIKLIDKEERSYIIQVIVKTEGKWHLGRNPSIHGTFTREAARRFDEFNLNS 324

Query: 63  KQFTFIGSEGLPPKHPTS 81
           +Q+ F G+  + P+   S
Sbjct: 325 EQYFFEGNLAISPEKAVS 342

[Close]
BLAST of Csa2G055060 vs. NCBI nr
Match: gi|700205999|gb|KGN61118.1| (hypothetical protein Csa_2G055060 [Cucumis sativus])

HSP 1 Score: 273.5 bits (698), Expect = 2.0e-70
Identity = 134/134 (100.00%), Postives = 134/134 (100.00%), Query Frame = 1 

Query: 1   MVDIKSRFVPAYIRITDDLGNSFPIQIVSHTQGKWLVERNVRKHGIFKSQATTSFGEFNP 60
           MVDIKSRFVPAYIRITDDLGNSFPIQIVSHTQGKWLVERNVRKHGIFKSQATTSFGEFNP
Sbjct: 1   MVDIKSRFVPAYIRITDDLGNSFPIQIVSHTQGKWLVERNVRKHGIFKSQATTSFGEFNP 60

Query: 61  NAKQFTFIGSEGLPPKHPTSSKNKVLNDEIKNGLNAKFGVLSTQKCVAKKQLCVSTTFTD 120
           NAKQFTFIGSEGLPPKHPTSSKNKVLNDEIKNGLNAKFGVLSTQKCVAKKQLCVSTTFTD
Sbjct: 61  NAKQFTFIGSEGLPPKHPTSSKNKVLNDEIKNGLNAKFGVLSTQKCVAKKQLCVSTTFTD 120

Query: 121 AEKHVDAGVVNDAL 135
           AEKHVDAGVVNDAL
Sbjct: 121 AEKHVDAGVVNDAL 134

[Close]
BLAST of Csa2G055060 vs. NCBI nr
Match: gi|659071590|ref|XP_008460776.1| (PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103499536 [Cucumis melo])

HSP 1 Score: 91.3 bits (225), Expect = 1.4e-15
Identity = 47/122 (38.52%), Postives = 64/122 (52.46%), Query Frame = 1 

Query: 6   SRFVPAYIRITDDLGNSFPIQIVSHTQGKWLVERNVRKHGIFKSQATTSFGEFNPNAKQF 65
           S F+PA +RI D+ GN F IQ+V+H +GKWL+ERNVR HG FK QA  +F EFNP ++QF
Sbjct: 341 SGFLPANVRIFDNEGNKFSIQVVTHPEGKWLIERNVRLHGTFKRQAAAAFDEFNPESEQF 400

Query: 66  TFIGSEGLPPKHPTSSKNKVLNDEIKNGLNAKFGVLSTQKCVAKKQLCVSTTFTDAEKHV 125
            F G E + P    +S +   +         K  ++   K      L       D+  H 
Sbjct: 401 FFEGMEAISPDFLATSSDGRKSSTPDQPSALKSVIIKPDKIATSPSLLNEEAVNDSNVHA 460

Query: 126 DA 128
            A
Sbjct: 461 TA 462

[Close]
BLAST of Csa2G055060 vs. NCBI nr
Match: gi|307135793|gb|ADN33672.1| (hypothetical protein [Cucumis melo subsp. melo])

HSP 1 Score: 62.8 bits (151), Expect = 5.4e-07
Identity = 30/78 (38.46%), Postives = 46/78 (58.97%), Query Frame = 1 

Query: 3   DIKSRFVPAYIRITDDLGNSFPIQIVSHTQGKWLVERNVRKHGIFKSQATTSFGEFNPNA 62
           D  S F+PA+I++ D    S+ IQ++  T+GKW + RN   HG F  +A   F EFN N+
Sbjct: 265 DNYSGFIPAFIKLIDKEERSYIIQVIVKTEGKWHLGRNPSIHGTFTREAARRFDEFNLNS 324

Query: 63  KQFTFIGSEGLPPKHPTS 81
           +Q+ F G+  + P+   S
Sbjct: 325 EQYFFEGNLAISPEKAVS 342

The following BLAST results are available for this feature:
BLAST of Csa2G055060 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LH82_CUCSA1.4e-70100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_2G055060 PE=4 SV=1[more]
E5GB30_CUCME3.8e-0738.46Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
BLAST of Csa2G055060 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700205999|gb|KGN61118.1|2.0e-70100.00hypothetical protein Csa_2G055060 [Cucumis sativus][more]
gi|659071590|ref|XP_008460776.1|1.4e-1538.52PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103499536 [Cucumis me... [more]
gi|307135793|gb|ADN33672.1|5.4e-0738.46hypothetical protein [Cucumis melo subsp. melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU174147cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa2G055060.1Csa2G055060.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU174147CU174147transcribed_cluster