Csa2G055030 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa2G055030
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr2 : 4193845 .. 4194054 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGAAGAATTGGAGAAGAAGACGAGAAGAAAACAATAAAAAGAGAAGCAGATCTGCTGAAGAAGAACGAAACAGAAGAGAGAAGAGAAGGATATATGTTGAAGAAGAACGATGGAGAAGAGGGAGAAGAAGACAAGGAGAAGAGAAGTAGGCAGAGAGGAGAAACAGTGAAGAACGGTGGAGAAGAGGAGAAAAAAATGAAAAGGTAA

mRNA sequence

ATGAGAAGAATTGGAGAAGAAGACGAGAAGAAAACAATAAAAAGAGAAGCAGATCTGCTGAAGAAGAACGAAACAGAAGAGAGAAGAGAAGGATATATGTTGAAGAAGAACGATGGAGAAGAGGGAGAAGAAGACAAGGAGAAGAGAAGTAGGCAGAGAGGAGAAACAGTGAAGAACGGTGGAGAAGAGGAGAAAAAAATGAAAAGGTAA

Coding sequence (CDS)

ATGAGAAGAATTGGAGAAGAAGACGAGAAGAAAACAATAAAAAGAGAAGCAGATCTGCTGAAGAAGAACGAAACAGAAGAGAGAAGAGAAGGATATATGTTGAAGAAGAACGATGGAGAAGAGGGAGAAGAAGACAAGGAGAAGAGAAGTAGGCAGAGAGGAGAAACAGTGAAGAACGGTGGAGAAGAGGAGAAAAAAATGAAAAGGTAA

Protein sequence

MRRIGEEDEKKTIKREADLLKKNETEERREGYMLKKNDGEEGEEDKEKRSRQRGETVKNGGEEEKKMKR*
Homology
[Close]
BLAST of Csa2G055030 vs. TrEMBL
Match: A0A0A0LGQ9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G055030 PE=4 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 7.4e-31
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 1 

Query: 1  MRRIGEEDEKKTIKREADLLKKNETEERREGYMLKKNDGEEGEEDKEKRSRQRGETVKNG 60
          MRRIGEEDEKKTIKREADLLKKNETEERREGYMLKKNDGEEGEEDKEKRSRQRGETVKNG
Sbjct: 1  MRRIGEEDEKKTIKREADLLKKNETEERREGYMLKKNDGEEGEEDKEKRSRQRGETVKNG 60

Query: 61 GEEEKKMKR 70
          GEEEKKMKR
Sbjct: 61 GEEEKKMKR 69

[Close]
BLAST of Csa2G055030 vs. NCBI nr
Match: gi|700205996|gb|KGN61115.1| (hypothetical protein Csa_2G055030 [Cucumis sativus])

HSP 1 Score: 140.6 bits (353), Expect = 1.1e-30
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 1 

Query: 1  MRRIGEEDEKKTIKREADLLKKNETEERREGYMLKKNDGEEGEEDKEKRSRQRGETVKNG 60
          MRRIGEEDEKKTIKREADLLKKNETEERREGYMLKKNDGEEGEEDKEKRSRQRGETVKNG
Sbjct: 1  MRRIGEEDEKKTIKREADLLKKNETEERREGYMLKKNDGEEGEEDKEKRSRQRGETVKNG 60

Query: 61 GEEEKKMKR 70
          GEEEKKMKR
Sbjct: 61 GEEEKKMKR 69

The following BLAST results are available for this feature:
BLAST of Csa2G055030 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LGQ9_CUCSA7.4e-31100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_2G055030 PE=4 SV=1[more]
BLAST of Csa2G055030 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700205996|gb|KGN61115.1|1.1e-30100.00hypothetical protein Csa_2G055030 [Cucumis sativus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa2G055030.1Csa2G055030.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableunknownCoilCoilcoord: 10..30
scor