Csa2G023840 (gene) Cucumber (Chinese Long) v2

NameCsa2G023840
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionLipoxygenase; contains IPR008976 (Lipase/lipooxygenase, PLAT/LH2)
LocationChr2 : 2762705 .. 2763016 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AAATCCTCTCTTCTTAAAGATAATAACAATATGTTGATTGGAAGCATTGTTGGAGCCATCTCTGGACTGAAACATGGAGGGAAGAAAATCAATGGAACTGTGGTTTTAGTGAGAGACAATGTCTTAGATTTCAATGATTTTGGTTCCACTGTTCTTGATAATCTCCATGAGCTTTTAGGCGGCGGCGTTTCTCTTCAACTCGTTAGCGCTCAACACGGTGACCCTTGTGAGTTCTTTTTTTGTCTTAACCATCGGTCTTTGATGTTTCTTTGTTTTGATTTTTCACCAACTTTCAAACAAAACCGTATATGA

mRNA sequence

ATGTTGATTGGAAGCATTGTTGGAGCCATCTCTGGACTGAAACATGGAGGGAAGAAAATCAATGGAACTGTGGTTTTAGTGAGAGACAATGTCTTAGATTTCAATGATTTTGGTTCCACTGTTCTTGATAATCTCCATGAGCTTTTAGGCGGCGGCGTTTCTCTTCAACTCGTTAGCGCTCAACACGGTGACCCTTGTGAGTTCTTTTTTTGTCTTAACCATCGGTCTTTGATGTTTCTTTGTTTTGATTTTTCACCAACTTTCAAACAAAACCGTATATGA

Coding sequence (CDS)

ATGTTGATTGGAAGCATTGTTGGAGCCATCTCTGGACTGAAACATGGAGGGAAGAAAATCAATGGAACTGTGGTTTTAGTGAGAGACAATGTCTTAGATTTCAATGATTTTGGTTCCACTGTTCTTGATAATCTCCATGAGCTTTTAGGCGGCGGCGTTTCTCTTCAACTCGTTAGCGCTCAACACGGTGACCCTTGTGAGTTCTTTTTTTGTCTTAACCATCGGTCTTTGATGTTTCTTTGTTTTGATTTTTCACCAACTTTCAAACAAAACCGTATATGA

Protein sequence

MLIGSIVGAISGLKHGGKKINGTVVLVRDNVLDFNDFGSTVLDNLHELLGGGVSLQLVSAQHGDPCEFFFCLNHRSLMFLCFDFSPTFKQNRI*
BLAST of Csa2G023840 vs. Swiss-Prot
Match: LOX15_SOLTU (Probable linoleate 9S-lipoxygenase 5 OS=Solanum tuberosum GN=LOX1.5 PE=2 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 2.5e-11
Identity = 36/66 (54.55%), Postives = 44/66 (66.67%), Query Frame = 1

Query: 1  MLIGSIVGAISGLKH-GGKKINGTVVLVRDNVLDFNDFGSTVLDNLHELLGGGVSLQLVS 60
          ML+  IV AISG     GKK+ GT+VL++ NVLDFND  +++LD + E LG  VSLQL+S
Sbjct: 1  MLLEKIVEAISGRSEDNGKKVKGTIVLMKKNVLDFNDVNASLLDGVLEFLGKRVSLQLIS 60

Query: 61 AQHGDP 66
            H DP
Sbjct: 61 VVHADP 66

BLAST of Csa2G023840 vs. Swiss-Prot
Match: LOX2_ORYSJ (Linoleate 9S-lipoxygenase 2 OS=Oryza sativa subsp. japonica GN=LOX1.1 PE=2 SV=2)

HSP 1 Score: 63.9 bits (154), Expect = 1.1e-09
Identity = 30/64 (46.88%), Postives = 45/64 (70.31%), Query Frame = 1

Query: 2  LIGSIVGAISGLKHGGKKINGTVVLVRDNVLDFNDFGSTVLDNLHELLGGGVSLQLVSAQ 61
          ++G I+G ++G K+   ++ G++VL+R N LD NDFG+TV+D + E LG GV+ QLVS+ 
Sbjct: 1  MLGGIIGGLTGNKNA--RLKGSLVLMRKNALDINDFGATVIDGISEFLGRGVTCQLVSSS 60

Query: 62 HGDP 66
            DP
Sbjct: 61 LVDP 62

BLAST of Csa2G023840 vs. Swiss-Prot
Match: LOX3_ORYSJ (Putative linoleate 9S-lipoxygenase 3 OS=Oryza sativa subsp. japonica GN=Os03g0700400 PE=3 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 1.4e-09
Identity = 32/64 (50.00%), Postives = 42/64 (65.62%), Query Frame = 1

Query: 2  LIGSIVGAISGLKHGGKKINGTVVLVRDNVLDFNDFGSTVLDNLHELLGGGVSLQLVSAQ 61
          ++G I+  I+G     + + GTVVL+R NVLD NDFG+TV+D L E LG GV+ QL+S+ 
Sbjct: 1  MLGGIIDTITGSSKQSR-LKGTVVLMRKNVLDLNDFGATVIDGLGEFLGKGVTCQLISST 60

Query: 62 HGDP 66
            DP
Sbjct: 61 AVDP 63

BLAST of Csa2G023840 vs. Swiss-Prot
Match: LOX14_SOLTU (Probable linoleate 9S-lipoxygenase 4 OS=Solanum tuberosum GN=LOX1.4 PE=2 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 3.1e-09
Identity = 28/64 (43.75%), Postives = 39/64 (60.94%), Query Frame = 1

Query: 2  LIGSIVGAISGLKHGGKKINGTVVLVRDNVLDFNDFGSTVLDNLHELLGGGVSLQLVSAQ 61
          ++G IVG + G  H  KK+ GTVV+++ N LDF D   ++ D + E LG  VS QL+S+ 
Sbjct: 1  MLGQIVGGLIGGHHDSKKVKGTVVMMKKNALDFTDLAGSLTDKIFEALGQKVSFQLISSV 60

Query: 62 HGDP 66
            DP
Sbjct: 61 QSDP 64

BLAST of Csa2G023840 vs. Swiss-Prot
Match: LOX1_HORVU (Linoleate 9S-lipoxygenase 1 OS=Hordeum vulgare GN=LOX1.1 PE=1 SV=2)

HSP 1 Score: 62.0 bits (149), Expect = 4.0e-09
Identity = 28/60 (46.67%), Postives = 41/60 (68.33%), Query Frame = 1

Query: 1  MLIGSIVGAISGLKHGGKKINGTVVLVRDNVLDFNDFGSTVLDNLHELLGGGVSLQLVSA 60
          ML+G ++  ++G     + + GTVVL+R NVLD NDFG+T++D + E LG GV+ QL+S+
Sbjct: 1  MLLGGLIDTLTGANKSAR-LKGTVVLMRKNVLDLNDFGATIIDGIGEFLGKGVTCQLISS 59

BLAST of Csa2G023840 vs. TrEMBL
Match: A0A0A0LJN2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G023840 PE=4 SV=1)

HSP 1 Score: 193.4 bits (490), Expect = 1.3e-46
Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 1

Query: 1  MLIGSIVGAISGLKHGGKKINGTVVLVRDNVLDFNDFGSTVLDNLHELLGGGVSLQLVSA 60
          MLIGSIVGAISGLKHGGKKINGTVVLVRDNVLDFNDFGSTVLDNLHELLGGGVSLQLVSA
Sbjct: 1  MLIGSIVGAISGLKHGGKKINGTVVLVRDNVLDFNDFGSTVLDNLHELLGGGVSLQLVSA 60

Query: 61 QHGDPCEFFFCLNHRSLMFLCFDFSPTFKQNRI 94
          QHGDPCEFFFCLNHRSLMFLCFDFSPTFKQNRI
Sbjct: 61 QHGDPCEFFFCLNHRSLMFLCFDFSPTFKQNRI 93

BLAST of Csa2G023840 vs. TrEMBL
Match: D5FUD9_VITVI (Lipoxygenase OS=Vitis vinifera GN=LOXC PE=2 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 1.7e-14
Identity = 45/64 (70.31%), Postives = 54/64 (84.38%), Query Frame = 1

Query: 2  LIGSIVGAISGLKHGGKKINGTVVLVRDNVLDFNDFGSTVLDNLHELLGGGVSLQLVSAQ 61
          +I SIVGAI+G ++  KKI GTVVL++ NVLDFNDF ++VLD +HELLG GVSLQLVSA 
Sbjct: 1  MIHSIVGAITG-ENDKKKIKGTVVLMKKNVLDFNDFNASVLDRVHELLGQGVSLQLVSAV 60

Query: 62 HGDP 66
          HGDP
Sbjct: 61 HGDP 63

BLAST of Csa2G023840 vs. TrEMBL
Match: F6HZ10_VITVI (Lipoxygenase OS=Vitis vinifera GN=VIT_14s0128g00780 PE=3 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 1.7e-14
Identity = 45/64 (70.31%), Postives = 54/64 (84.38%), Query Frame = 1

Query: 2  LIGSIVGAISGLKHGGKKINGTVVLVRDNVLDFNDFGSTVLDNLHELLGGGVSLQLVSAQ 61
          +I SIVGAI+G ++  KKI GTVVL++ NVLDFNDF ++VLD +HELLG GVSLQLVSA 
Sbjct: 1  MIHSIVGAITG-ENDKKKIKGTVVLMKKNVLDFNDFNASVLDRVHELLGQGVSLQLVSAV 60

Query: 62 HGDP 66
          HGDP
Sbjct: 61 HGDP 63

BLAST of Csa2G023840 vs. TrEMBL
Match: T1WJG4_VITVI (Lipoxygenase OS=Vitis vinifera GN=LOX1 PE=2 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 1.7e-14
Identity = 45/64 (70.31%), Postives = 54/64 (84.38%), Query Frame = 1

Query: 2  LIGSIVGAISGLKHGGKKINGTVVLVRDNVLDFNDFGSTVLDNLHELLGGGVSLQLVSAQ 61
          +I SIVGAI+G ++  KKI GTVVL++ NVLDFNDF ++VLD +HELLG GVSLQLVSA 
Sbjct: 1  MIHSIVGAITG-ENDKKKIKGTVVLMKKNVLDFNDFNASVLDRVHELLGQGVSLQLVSAV 60

Query: 62 HGDP 66
          HGDP
Sbjct: 61 HGDP 63

BLAST of Csa2G023840 vs. TrEMBL
Match: S4UL92_MALDO (Lipoxygenase OS=Malus domestica GN=LOX1a PE=2 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 7.9e-12
Identity = 38/68 (55.88%), Postives = 53/68 (77.94%), Query Frame = 1

Query: 2  LIGSIVGAISGLKHGGK----KINGTVVLVRDNVLDFNDFGSTVLDNLHELLGGGVSLQL 61
          ++ +++G I+G +  G+    KINGTVVL++ NVLDFNDF ++VLD +HEL+G  VSLQL
Sbjct: 1  MLHNLLGKITGQQQDGESNIGKINGTVVLMKKNVLDFNDFNASVLDRVHELVGQRVSLQL 60

Query: 62 VSAQHGDP 66
          +SA HGDP
Sbjct: 61 ISAVHGDP 68

BLAST of Csa2G023840 vs. TAIR10
Match: AT1G55020.1 (AT1G55020.1 lipoxygenase 1)

HSP 1 Score: 58.9 bits (141), Expect = 1.9e-09
Identity = 27/47 (57.45%), Postives = 35/47 (74.47%), Query Frame = 1

Query: 18 KKINGTVVLVRDNVLDFNDFGSTVLDNLHELLGGGVSLQLVSAQHGD 65
          KK+ GTVVL++ NVLDFNDF ++ LD LHE LG  ++L+LVS+   D
Sbjct: 19 KKVKGTVVLMKKNVLDFNDFNASFLDRLHEFLGNKITLRLVSSDVTD 65

BLAST of Csa2G023840 vs. TAIR10
Match: AT3G22400.1 (AT3G22400.1 PLAT/LH2 domain-containing lipoxygenase family protein)

HSP 1 Score: 48.9 bits (115), Expect = 2.0e-06
Identity = 23/47 (48.94%), Postives = 33/47 (70.21%), Query Frame = 1

Query: 19 KINGTVVLVRDNVLDFNDFGSTVLDNLHELLGGGVSLQLVSAQHGDP 66
          KI G VV+++ N+LDF D  +++LD ++ELLG  VSL L+S+   DP
Sbjct: 34 KIEGEVVVMKKNLLDFKDVMASLLDRVNELLGRRVSLHLISSHQPDP 80

BLAST of Csa2G023840 vs. NCBI nr
Match: gi|700205798|gb|KGN60917.1| (hypothetical protein Csa_2G023840 [Cucumis sativus])

HSP 1 Score: 193.4 bits (490), Expect = 1.8e-46
Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 1

Query: 1  MLIGSIVGAISGLKHGGKKINGTVVLVRDNVLDFNDFGSTVLDNLHELLGGGVSLQLVSA 60
          MLIGSIVGAISGLKHGGKKINGTVVLVRDNVLDFNDFGSTVLDNLHELLGGGVSLQLVSA
Sbjct: 1  MLIGSIVGAISGLKHGGKKINGTVVLVRDNVLDFNDFGSTVLDNLHELLGGGVSLQLVSA 60

Query: 61 QHGDPCEFFFCLNHRSLMFLCFDFSPTFKQNRI 94
          QHGDPCEFFFCLNHRSLMFLCFDFSPTFKQNRI
Sbjct: 61 QHGDPCEFFFCLNHRSLMFLCFDFSPTFKQNRI 93

BLAST of Csa2G023840 vs. NCBI nr
Match: gi|449442807|ref|XP_004139172.1| (PREDICTED: probable linoleate 9S-lipoxygenase 5 [Cucumis sativus])

HSP 1 Score: 132.5 bits (332), Expect = 3.9e-28
Identity = 66/69 (95.65%), Postives = 67/69 (97.10%), Query Frame = 1

Query: 1  MLIGSIVGAISGLKHGGKKINGTVVLVRDNVLDFNDFGSTVLDNLHELLGGGVSLQLVSA 60
          MLIGSIVGAISGLKHGGKKINGTVVLVRDNVLDFNDFGSTVLDNLHELLGGGVSLQLVSA
Sbjct: 1  MLIGSIVGAISGLKHGGKKINGTVVLVRDNVLDFNDFGSTVLDNLHELLGGGVSLQLVSA 60

Query: 61 QHGDPCEFF 70
          QHGDP + F
Sbjct: 61 QHGDPSKGF 69

BLAST of Csa2G023840 vs. NCBI nr
Match: gi|659070309|ref|XP_008454481.1| (PREDICTED: linoleate 9S-lipoxygenase 6-like [Cucumis melo])

HSP 1 Score: 129.4 bits (324), Expect = 3.3e-27
Identity = 64/69 (92.75%), Postives = 67/69 (97.10%), Query Frame = 1

Query: 1  MLIGSIVGAISGLKHGGKKINGTVVLVRDNVLDFNDFGSTVLDNLHELLGGGVSLQLVSA 60
          MLIGSIVGAISGLKHGGKKI+GTVVL+RDNVLDFNDFGSTVLDNLHELLGGGVSLQLVSA
Sbjct: 1  MLIGSIVGAISGLKHGGKKIHGTVVLMRDNVLDFNDFGSTVLDNLHELLGGGVSLQLVSA 60

Query: 61 QHGDPCEFF 70
          QHGDP + F
Sbjct: 61 QHGDPSKEF 69

BLAST of Csa2G023840 vs. NCBI nr
Match: gi|296088356|emb|CBI36801.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 86.7 bits (213), Expect = 2.4e-14
Identity = 45/64 (70.31%), Postives = 54/64 (84.38%), Query Frame = 1

Query: 2  LIGSIVGAISGLKHGGKKINGTVVLVRDNVLDFNDFGSTVLDNLHELLGGGVSLQLVSAQ 61
          +I SIVGAI+G ++  KKI GTVVL++ NVLDFNDF ++VLD +HELLG GVSLQLVSA 
Sbjct: 1  MIHSIVGAITG-ENDKKKIKGTVVLMKKNVLDFNDFNASVLDRVHELLGQGVSLQLVSAV 60

Query: 62 HGDP 66
          HGDP
Sbjct: 61 HGDP 63

BLAST of Csa2G023840 vs. NCBI nr
Match: gi|534471270|gb|AGU28274.1| (lipoxygenase 1 [Vitis vinifera])

HSP 1 Score: 86.7 bits (213), Expect = 2.4e-14
Identity = 45/64 (70.31%), Postives = 54/64 (84.38%), Query Frame = 1

Query: 2  LIGSIVGAISGLKHGGKKINGTVVLVRDNVLDFNDFGSTVLDNLHELLGGGVSLQLVSAQ 61
          +I SIVGAI+G ++  KKI GTVVL++ NVLDFNDF ++VLD +HELLG GVSLQLVSA 
Sbjct: 1  MIHSIVGAITG-ENDKKKIKGTVVLMKKNVLDFNDFNASVLDRVHELLGQGVSLQLVSAV 60

Query: 62 HGDP 66
          HGDP
Sbjct: 61 HGDP 63

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
LOX15_SOLTU2.5e-1154.55Probable linoleate 9S-lipoxygenase 5 OS=Solanum tuberosum GN=LOX1.5 PE=2 SV=1[more]
LOX2_ORYSJ1.1e-0946.88Linoleate 9S-lipoxygenase 2 OS=Oryza sativa subsp. japonica GN=LOX1.1 PE=2 SV=2[more]
LOX3_ORYSJ1.4e-0950.00Putative linoleate 9S-lipoxygenase 3 OS=Oryza sativa subsp. japonica GN=Os03g070... [more]
LOX14_SOLTU3.1e-0943.75Probable linoleate 9S-lipoxygenase 4 OS=Solanum tuberosum GN=LOX1.4 PE=2 SV=1[more]
LOX1_HORVU4.0e-0946.67Linoleate 9S-lipoxygenase 1 OS=Hordeum vulgare GN=LOX1.1 PE=1 SV=2[more]
Match NameE-valueIdentityDescription
A0A0A0LJN2_CUCSA1.3e-46100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_2G023840 PE=4 SV=1[more]
D5FUD9_VITVI1.7e-1470.31Lipoxygenase OS=Vitis vinifera GN=LOXC PE=2 SV=1[more]
F6HZ10_VITVI1.7e-1470.31Lipoxygenase OS=Vitis vinifera GN=VIT_14s0128g00780 PE=3 SV=1[more]
T1WJG4_VITVI1.7e-1470.31Lipoxygenase OS=Vitis vinifera GN=LOX1 PE=2 SV=1[more]
S4UL92_MALDO7.9e-1255.88Lipoxygenase OS=Malus domestica GN=LOX1a PE=2 SV=1[more]
Match NameE-valueIdentityDescription
AT1G55020.11.9e-0957.45 lipoxygenase 1[more]
AT3G22400.12.0e-0648.94 PLAT/LH2 domain-containing lipoxygenase family protein[more]
Match NameE-valueIdentityDescription
gi|700205798|gb|KGN60917.1|1.8e-46100.00hypothetical protein Csa_2G023840 [Cucumis sativus][more]
gi|449442807|ref|XP_004139172.1|3.9e-2895.65PREDICTED: probable linoleate 9S-lipoxygenase 5 [Cucumis sativus][more]
gi|659070309|ref|XP_008454481.1|3.3e-2792.75PREDICTED: linoleate 9S-lipoxygenase 6-like [Cucumis melo][more]
gi|296088356|emb|CBI36801.3|2.4e-1470.31unnamed protein product [Vitis vinifera][more]
gi|534471270|gb|AGU28274.1|2.4e-1470.31lipoxygenase 1 [Vitis vinifera][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR000907LipOase
IPR001024PLAT/LH2_dom
Vocabulary: Molecular Function
TermDefinition
GO:0016702oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen
GO:0046872metal ion binding
GO:0005515protein binding
Vocabulary: Biological Process
TermDefinition
GO:0055114oxidation-reduction process
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0031408 oxylipin biosynthetic process
cellular_component GO:0005575 cellular_component
molecular_function GO:0046872 metal ion binding
molecular_function GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen
molecular_function GO:0005515 protein binding

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa2G023840.1Csa2G023840.1mRNA


Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000907LipoxygenasePANTHERPTHR11771LIPOXYGENASEcoord: 1..65
score: 9.0
IPR001024PLAT/LH2 domainGENE3DG3DSA:2.60.60.20coord: 22..62
score: 4.
IPR001024PLAT/LH2 domainunknownSSF49723Lipase/lipooxygenase domain (PLAT/LH2 domain)coord: 18..64
score: 1.1
NoneNo IPR availablePANTHERPTHR11771:SF48LINOLEATE 9S-LIPOXYGENASE 1coord: 1..65
score: 9.0