Csa2G023840 (gene) Cucumber (Chinese Long) v2
The following sequences are available for this feature:
Legend: five_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below.AAATCCTCTCTTCTTAAAGATAATAACAATATGTTGATTGGAAGCATTGTTGGAGCCATCTCTGGACTGAAACATGGAGGGAAGAAAATCAATGGAACTGTGGTTTTAGTGAGAGACAATGTCTTAGATTTCAATGATTTTGGTTCCACTGTTCTTGATAATCTCCATGAGCTTTTAGGCGGCGGCGTTTCTCTTCAACTCGTTAGCGCTCAACACGGTGACCCTTGTGAGTTCTTTTTTTGTCTTAACCATCGGTCTTTGATGTTTCTTTGTTTTGATTTTTCACCAACTTTCAAACAAAACCGTATATGA ATGTTGATTGGAAGCATTGTTGGAGCCATCTCTGGACTGAAACATGGAGGGAAGAAAATCAATGGAACTGTGGTTTTAGTGAGAGACAATGTCTTAGATTTCAATGATTTTGGTTCCACTGTTCTTGATAATCTCCATGAGCTTTTAGGCGGCGGCGTTTCTCTTCAACTCGTTAGCGCTCAACACGGTGACCCTTGTGAGTTCTTTTTTTGTCTTAACCATCGGTCTTTGATGTTTCTTTGTTTTGATTTTTCACCAACTTTCAAACAAAACCGTATATGA ATGTTGATTGGAAGCATTGTTGGAGCCATCTCTGGACTGAAACATGGAGGGAAGAAAATCAATGGAACTGTGGTTTTAGTGAGAGACAATGTCTTAGATTTCAATGATTTTGGTTCCACTGTTCTTGATAATCTCCATGAGCTTTTAGGCGGCGGCGTTTCTCTTCAACTCGTTAGCGCTCAACACGGTGACCCTTGTGAGTTCTTTTTTTGTCTTAACCATCGGTCTTTGATGTTTCTTTGTTTTGATTTTTCACCAACTTTCAAACAAAACCGTATATGA MLIGSIVGAISGLKHGGKKINGTVVLVRDNVLDFNDFGSTVLDNLHELLGGGVSLQLVSAQHGDPCEFFFCLNHRSLMFLCFDFSPTFKQNRI*
BLAST of Csa2G023840 vs. Swiss-Prot
Match: LOX15_SOLTU (Probable linoleate 9S-lipoxygenase 5 OS=Solanum tuberosum GN=LOX1.5 PE=2 SV=1) HSP 1 Score: 69.3 bits (168), Expect = 2.5e-11 Identity = 36/66 (54.55%), Postives = 44/66 (66.67%), Query Frame = 1
BLAST of Csa2G023840 vs. Swiss-Prot
Match: LOX2_ORYSJ (Linoleate 9S-lipoxygenase 2 OS=Oryza sativa subsp. japonica GN=LOX1.1 PE=2 SV=2) HSP 1 Score: 63.9 bits (154), Expect = 1.1e-09 Identity = 30/64 (46.88%), Postives = 45/64 (70.31%), Query Frame = 1
BLAST of Csa2G023840 vs. Swiss-Prot
Match: LOX3_ORYSJ (Putative linoleate 9S-lipoxygenase 3 OS=Oryza sativa subsp. japonica GN=Os03g0700400 PE=3 SV=1) HSP 1 Score: 63.5 bits (153), Expect = 1.4e-09 Identity = 32/64 (50.00%), Postives = 42/64 (65.62%), Query Frame = 1
BLAST of Csa2G023840 vs. Swiss-Prot
Match: LOX14_SOLTU (Probable linoleate 9S-lipoxygenase 4 OS=Solanum tuberosum GN=LOX1.4 PE=2 SV=1) HSP 1 Score: 62.4 bits (150), Expect = 3.1e-09 Identity = 28/64 (43.75%), Postives = 39/64 (60.94%), Query Frame = 1
BLAST of Csa2G023840 vs. Swiss-Prot
Match: LOX1_HORVU (Linoleate 9S-lipoxygenase 1 OS=Hordeum vulgare GN=LOX1.1 PE=1 SV=2) HSP 1 Score: 62.0 bits (149), Expect = 4.0e-09 Identity = 28/60 (46.67%), Postives = 41/60 (68.33%), Query Frame = 1
BLAST of Csa2G023840 vs. TrEMBL
Match: A0A0A0LJN2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G023840 PE=4 SV=1) HSP 1 Score: 193.4 bits (490), Expect = 1.3e-46 Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 1
BLAST of Csa2G023840 vs. TrEMBL
Match: D5FUD9_VITVI (Lipoxygenase OS=Vitis vinifera GN=LOXC PE=2 SV=1) HSP 1 Score: 86.7 bits (213), Expect = 1.7e-14 Identity = 45/64 (70.31%), Postives = 54/64 (84.38%), Query Frame = 1
BLAST of Csa2G023840 vs. TrEMBL
Match: F6HZ10_VITVI (Lipoxygenase OS=Vitis vinifera GN=VIT_14s0128g00780 PE=3 SV=1) HSP 1 Score: 86.7 bits (213), Expect = 1.7e-14 Identity = 45/64 (70.31%), Postives = 54/64 (84.38%), Query Frame = 1
BLAST of Csa2G023840 vs. TrEMBL
Match: T1WJG4_VITVI (Lipoxygenase OS=Vitis vinifera GN=LOX1 PE=2 SV=1) HSP 1 Score: 86.7 bits (213), Expect = 1.7e-14 Identity = 45/64 (70.31%), Postives = 54/64 (84.38%), Query Frame = 1
BLAST of Csa2G023840 vs. TrEMBL
Match: S4UL92_MALDO (Lipoxygenase OS=Malus domestica GN=LOX1a PE=2 SV=1) HSP 1 Score: 77.8 bits (190), Expect = 7.9e-12 Identity = 38/68 (55.88%), Postives = 53/68 (77.94%), Query Frame = 1
BLAST of Csa2G023840 vs. TAIR10
Match: AT1G55020.1 (AT1G55020.1 lipoxygenase 1) HSP 1 Score: 58.9 bits (141), Expect = 1.9e-09 Identity = 27/47 (57.45%), Postives = 35/47 (74.47%), Query Frame = 1
BLAST of Csa2G023840 vs. TAIR10
Match: AT3G22400.1 (AT3G22400.1 PLAT/LH2 domain-containing lipoxygenase family protein) HSP 1 Score: 48.9 bits (115), Expect = 2.0e-06 Identity = 23/47 (48.94%), Postives = 33/47 (70.21%), Query Frame = 1
BLAST of Csa2G023840 vs. NCBI nr
Match: gi|700205798|gb|KGN60917.1| (hypothetical protein Csa_2G023840 [Cucumis sativus]) HSP 1 Score: 193.4 bits (490), Expect = 1.8e-46 Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 1
BLAST of Csa2G023840 vs. NCBI nr
Match: gi|449442807|ref|XP_004139172.1| (PREDICTED: probable linoleate 9S-lipoxygenase 5 [Cucumis sativus]) HSP 1 Score: 132.5 bits (332), Expect = 3.9e-28 Identity = 66/69 (95.65%), Postives = 67/69 (97.10%), Query Frame = 1
BLAST of Csa2G023840 vs. NCBI nr
Match: gi|659070309|ref|XP_008454481.1| (PREDICTED: linoleate 9S-lipoxygenase 6-like [Cucumis melo]) HSP 1 Score: 129.4 bits (324), Expect = 3.3e-27 Identity = 64/69 (92.75%), Postives = 67/69 (97.10%), Query Frame = 1
BLAST of Csa2G023840 vs. NCBI nr
Match: gi|296088356|emb|CBI36801.3| (unnamed protein product [Vitis vinifera]) HSP 1 Score: 86.7 bits (213), Expect = 2.4e-14 Identity = 45/64 (70.31%), Postives = 54/64 (84.38%), Query Frame = 1
BLAST of Csa2G023840 vs. NCBI nr
Match: gi|534471270|gb|AGU28274.1| (lipoxygenase 1 [Vitis vinifera]) HSP 1 Score: 86.7 bits (213), Expect = 2.4e-14 Identity = 45/64 (70.31%), Postives = 54/64 (84.38%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene:
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