Csa2G020880 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa2G020880
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionPutative TIR-NBS-LRR-AAA+ATPase
LocationChr2 : 2471411 .. 2472098 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGGGATTGTACGTTGCTTGAAGAAATTCCAAAGGTTCCAGAAGGAGTAGTTTGTATGGATGCTGGAGGGTGCGTATTATTGACCAGATTTCCTGACTACATACCTGATTTCATATCTTGTGAGGGTAATTTGGTGTGTATCATTTCTTTCTCATGACCTCATCTCTCATGTATTTCGTTTATATAAGAATTAAGTTTACTCTTATTTTGCAGGAAGATGAAAAAAGTTTTGGAGAATTCAAACAACTCATATTAATGAATTATGATATTCCAGATTGGTGCAGGTACAAGAGTATGAACAACTCAATAACATTTAATTTTCCAACTGATTGTCTAAGTGGGAAAAGGAAGGCTTTTATTGTTCCTTGTGTCAAATTTCAATCTAATACTGGTCACACGAGGTGTTGGCTTCATTGTACCGTGTTTGTCAACGATATTGAAGTATGGTGTCGAATGTTAATGCCCAGATCTGACATATTGTGTCTAGATTTGAAGTAATATCATCAGGTGAGTATCTATGGATGCCAGTAGTTGATATTAAGTCCTCAAGAGATATTTTGGATAGAGTTACAGTGTTATTTGATGTTCGTGTTCCAAAGAGGCAACTACTTCATGTTTGTGATCCAAAGTGGGAAGATGAAGTAAGTATAAAAATGTATGGTGTTCACGTGATCATGGAGGAATAA

mRNA sequence

ATGAGGGATTGTACGTTGCTTGAAGAAATTCCAAAGGTTCCAGAAGGAGTAGTTTGTATGGATGCTGGAGGGTGCGTATTATTGACCAGATTTCCTGACTACATACCTGATTTCATATCTTGTGAGGGTAATTTGGAAGATGAAAAAAGTTTTGGAGAATTCAAACAACTCATATTAATGAATTATGATATTCCAGATTGGTGCAGATTTGAAGTAATATCATCAGGTGAGTATCTATGGATGCCAGTAGTTGATATTAAGTCCTCAAGAGATATTTTGGATAGAGTTACAGTGTTATTTGATGTTCGTGTTCCAAAGAGGCAACTACTTCATGTTTGTGATCCAAAGTGGGAAGATGAAGTAAGTATAAAAATGTATGGTGTTCACGTGATCATGGAGGAATAA

Coding sequence (CDS)

ATGAGGGATTGTACGTTGCTTGAAGAAATTCCAAAGGTTCCAGAAGGAGTAGTTTGTATGGATGCTGGAGGGTGCGTATTATTGACCAGATTTCCTGACTACATACCTGATTTCATATCTTGTGAGGGTAATTTGGAAGATGAAAAAAGTTTTGGAGAATTCAAACAACTCATATTAATGAATTATGATATTCCAGATTGGTGCAGATTTGAAGTAATATCATCAGGTGAGTATCTATGGATGCCAGTAGTTGATATTAAGTCCTCAAGAGATATTTTGGATAGAGTTACAGTGTTATTTGATGTTCGTGTTCCAAAGAGGCAACTACTTCATGTTTGTGATCCAAAGTGGGAAGATGAAGTAAGTATAAAAATGTATGGTGTTCACGTGATCATGGAGGAATAA

Protein sequence

MRDCTLLEEIPKVPEGVVCMDAGGCVLLTRFPDYIPDFISCEGNLEDEKSFGEFKQLILMNYDIPDWCRFEVISSGEYLWMPVVDIKSSRDILDRVTVLFDVRVPKRQLLHVCDPKWEDEVSIKMYGVHVIMEE*
Homology
[Close]
BLAST of Csa2G020880 vs. TrEMBL
Match: A0A0A0LFN6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G020880 PE=4 SV=1)

HSP 1 Score: 283.9 bits (725), Expect = 1.0e-73
Identity = 134/134 (100.00%), Postives = 134/134 (100.00%), Query Frame = 1 

Query: 1   MRDCTLLEEIPKVPEGVVCMDAGGCVLLTRFPDYIPDFISCEGNLEDEKSFGEFKQLILM 60
           MRDCTLLEEIPKVPEGVVCMDAGGCVLLTRFPDYIPDFISCEGNLEDEKSFGEFKQLILM
Sbjct: 1   MRDCTLLEEIPKVPEGVVCMDAGGCVLLTRFPDYIPDFISCEGNLEDEKSFGEFKQLILM 60

Query: 61  NYDIPDWCRFEVISSGEYLWMPVVDIKSSRDILDRVTVLFDVRVPKRQLLHVCDPKWEDE 120
           NYDIPDWCRFEVISSGEYLWMPVVDIKSSRDILDRVTVLFDVRVPKRQLLHVCDPKWEDE
Sbjct: 61  NYDIPDWCRFEVISSGEYLWMPVVDIKSSRDILDRVTVLFDVRVPKRQLLHVCDPKWEDE 120

Query: 121 VSIKMYGVHVIMEE 135
           VSIKMYGVHVIMEE
Sbjct: 121 VSIKMYGVHVIMEE 134

[Close]
BLAST of Csa2G020880 vs. TrEMBL
Match: A0A0A0LJK8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G075330 PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 4.7e-18
Identity = 47/86 (54.65%), Postives = 61/86 (70.93%), Query Frame = 1 

Query: 3   DCTLLEEIPKVPEGVVCMDAGGCVLLTRFPDYIPDFISCEGNLEDEKSFGEFKQLILMNY 62
           +C LLEEIPKVP+GVV M+A GC+ LTRFPD IPDFI C+ N+E +K     KQLILMN 
Sbjct: 858 ECKLLEEIPKVPKGVVYMNAIGCISLTRFPDNIPDFICCDDNVEYDKKDQVIKQLILMNC 917

Query: 63  DIPDWCRFEVISSGEYLWMPVVDIKS 89
           DIPDW  ++ +++      P++D  S
Sbjct: 918 DIPDWFSYKSMNNSVTFLFPLIDYLS 943

[Close]
BLAST of Csa2G020880 vs. TrEMBL
Match: A0A0A0LJ96_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G059700 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 4.4e-16
Identity = 43/65 (66.15%), Postives = 51/65 (78.46%), Query Frame = 1 

Query: 7   LEEIPKVPEGVVCMDAGGCVLLTRFPDYIPDFISCEGNLEDEKSFGEFKQLILMNYDIPD 66
           LEEI KVP+GVV MD  GCV L RFP+ IPDFISC+ N+E +K  G  KQLILMN DIPD
Sbjct: 825 LEEILKVPKGVVRMDTRGCVSLARFPNNIPDFISCDDNVEYDKKDGVIKQLILMNCDIPD 884

Query: 67  WCRFE 72
           WC+++
Sbjct: 885 WCKYK 889

[Close]
BLAST of Csa2G020880 vs. TrEMBL
Match: A0A0A0LJ96_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G059700 PE=4 SV=1)

HSP 1 Score: 50.8 bits (120), Expect = 1.5e-03
Identity = 56/200 (28.00%), Postives = 80/200 (40.00%), Query Frame = 1 

Query: 7    LEEIPKVPEGVVCMDAGGCVLLTRF---------------------------------PD 66
            LEEI KVP+GVV MD  GCV L RF                                 PD
Sbjct: 825  LEEILKVPKGVVRMDTRGCVSLARFPNNIPDFISCDDNVEYDKKDGVIKQLILMNCDIPD 884

Query: 67   --------------YIPDFISCEG----------NLEDEKSFGEFKQLILMNYDIPDWCR 126
                          ++ D++S +           ++ ++    +    +L   DI  W R
Sbjct: 885  WCKYKSMNDSVTFDFLADYLSWKRKAFIALCVKFHVTNDHELVKLNCRVLFINDIEVWSR 944

Query: 127  FEV------ISSGEYLWMPVVDIKSSR-------DILDRVTVLFDVRV--PKRQLLHVCD 135
              +      +S GE LWM V+     R       DI+D ++  F + +   K  LL   +
Sbjct: 945  MSISNFNFWLSRGECLWMAVLHPCMHRLINPYGDDIMD-ISPNFSIGILDDKITLLFEVN 1004


HSP 2 Score: 88.6 bits (218), Expect = 6.4e-15
Identity = 42/80 (52.50%), Postives = 56/80 (70.00%), Query Frame = 1 

Query: 3   DCTLLEEIPKVPEGVVCMDAGGCVLLTRFPDYIPDFISCEGNLEDEKSFGEFKQLILMNY 62
           DC LLEEI KVPEGV+CM A G + L RFP+ + DF+SC+ ++E  K  GE KQL+LMN 
Sbjct: 821 DCELLEEISKVPEGVICMSAAGSISLARFPNNLADFMSCDDSVEYCKG-GELKQLVLMNC 880

Query: 63  DIPDWCRFEVISSGEYLWMP 83
            IPDW R++ +S     ++P
Sbjct: 881 HIPDWYRYKSMSDSLTFFLP 899

[Close]
BLAST of Csa2G020880 vs. TrEMBL
Match: E7CHD4_CUCSA (Putative NBS-LRR protein OS=Cucumis sativus PE=3 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 6.4e-15
Identity = 42/80 (52.50%), Postives = 56/80 (70.00%), Query Frame = 1 

Query: 3   DCTLLEEIPKVPEGVVCMDAGGCVLLTRFPDYIPDFISCEGNLEDEKSFGEFKQLILMNY 62
           DC LLEEI KVPEGV+CM A G + L RFP+ + DF+SC+ ++E  K  GE KQL+LMN 
Sbjct: 639 DCELLEEISKVPEGVICMSAAGSISLARFPNNLADFMSCDDSVEYCKG-GELKQLVLMNC 698

Query: 63  DIPDWCRFEVISSGEYLWMP 83
            IPDW R++ +S     ++P
Sbjct: 699 HIPDWYRYKSMSDSLTFFLP 717

[Close]
BLAST of Csa2G020880 vs. NCBI nr
Match: gi|700205746|gb|KGN60865.1| (hypothetical protein Csa_2G020880 [Cucumis sativus])

HSP 1 Score: 283.9 bits (725), Expect = 1.5e-73
Identity = 134/134 (100.00%), Postives = 134/134 (100.00%), Query Frame = 1 

Query: 1   MRDCTLLEEIPKVPEGVVCMDAGGCVLLTRFPDYIPDFISCEGNLEDEKSFGEFKQLILM 60
           MRDCTLLEEIPKVPEGVVCMDAGGCVLLTRFPDYIPDFISCEGNLEDEKSFGEFKQLILM
Sbjct: 1   MRDCTLLEEIPKVPEGVVCMDAGGCVLLTRFPDYIPDFISCEGNLEDEKSFGEFKQLILM 60

Query: 61  NYDIPDWCRFEVISSGEYLWMPVVDIKSSRDILDRVTVLFDVRVPKRQLLHVCDPKWEDE 120
           NYDIPDWCRFEVISSGEYLWMPVVDIKSSRDILDRVTVLFDVRVPKRQLLHVCDPKWEDE
Sbjct: 61  NYDIPDWCRFEVISSGEYLWMPVVDIKSSRDILDRVTVLFDVRVPKRQLLHVCDPKWEDE 120

Query: 121 VSIKMYGVHVIMEE 135
           VSIKMYGVHVIMEE
Sbjct: 121 VSIKMYGVHVIMEE 134

[Close]
BLAST of Csa2G020880 vs. NCBI nr
Match: gi|659071584|ref|XP_008460753.1| (PREDICTED: TMV resistance protein N-like [Cucumis melo])

HSP 1 Score: 100.1 bits (248), Expect = 3.0e-18
Identity = 49/87 (56.32%), Postives = 59/87 (67.82%), Query Frame = 1 

Query: 3   DCTLLEEIPKVPEGVVCMDAGGCVLLTRFPDYIPDFISCEGNLEDE-KSFGEFKQLILMN 62
           DC LLEEIPK+PEG V M+A GCV L RFPD IPDFISC+   E E    G FK L+LMN
Sbjct: 813 DCKLLEEIPKIPEGAVTMNASGCVSLARFPDNIPDFISCKFYEEVEYTKHGVFKNLVLMN 872

Query: 63  YDIPDWCRFEVISSGEYLWMPVVDIKS 89
            DIPDWC+++  ++      PV+D  S
Sbjct: 873 CDIPDWCKYKSTNNSITFLFPVIDYLS 899

[Close]
BLAST of Csa2G020880 vs. NCBI nr
Match: gi|659071584|ref|XP_008460753.1| (PREDICTED: TMV resistance protein N-like [Cucumis melo])

HSP 1 Score: 52.8 bits (125), Expect = 5.6e-04
Identity = 36/82 (43.90%), Postives = 43/82 (52.44%), Query Frame = 1 

Query: 74   SSGEYLWMPVVD------------------IKSSRDILDRVTVLFDVRVPKRQLLHVCDP 133
            S GEYLWM V+D                  I SSR ILD++TVLF+V  P+         
Sbjct: 942  SRGEYLWMQVLDPCVHFNPYGDDLNQPRFRINSSRGILDKITVLFEVITPE--------- 1001

Query: 134  KWE---DEVSIKMYGVHVIMEE 135
            KW+   +  SIKM GVHVIMEE
Sbjct: 1002 KWKYYYEVSSIKMCGVHVIMEE 1014


HSP 2 Score: 99.0 bits (245), Expect = 6.8e-18
Identity = 47/86 (54.65%), Postives = 61/86 (70.93%), Query Frame = 1 

Query: 3   DCTLLEEIPKVPEGVVCMDAGGCVLLTRFPDYIPDFISCEGNLEDEKSFGEFKQLILMNY 62
           +C LLEEIPKVP+GVV M+A GC+ LTRFPD IPDFI C+ N+E +K     KQLILMN 
Sbjct: 858 ECKLLEEIPKVPKGVVYMNAIGCISLTRFPDNIPDFICCDDNVEYDKKDQVIKQLILMNC 917

Query: 63  DIPDWCRFEVISSGEYLWMPVVDIKS 89
           DIPDW  ++ +++      P++D  S
Sbjct: 918 DIPDWFSYKSMNNSVTFLFPLIDYLS 943

[Close]
BLAST of Csa2G020880 vs. NCBI nr
Match: gi|778674065|ref|XP_011650121.1| (PREDICTED: protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1-like [Cucumis sativus])

HSP 1 Score: 92.4 bits (228), Expect = 6.4e-16
Identity = 43/65 (66.15%), Postives = 51/65 (78.46%), Query Frame = 1 

Query: 7   LEEIPKVPEGVVCMDAGGCVLLTRFPDYIPDFISCEGNLEDEKSFGEFKQLILMNYDIPD 66
           LEEI KVP+GVV MD  GCV L RFP+ IPDFISC+ N+E +K  G  KQLILMN DIPD
Sbjct: 636 LEEILKVPKGVVRMDTRGCVSLARFPNNIPDFISCDDNVEYDKKDGVIKQLILMNCDIPD 695

Query: 67  WCRFE 72
           WC+++
Sbjct: 696 WCKYK 700

[Close]
BLAST of Csa2G020880 vs. NCBI nr
Match: gi|778674065|ref|XP_011650121.1| (PREDICTED: protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1-like [Cucumis sativus])

HSP 1 Score: 50.8 bits (120), Expect = 2.1e-03
Identity = 56/200 (28.00%), Postives = 80/200 (40.00%), Query Frame = 1 

Query: 7   LEEIPKVPEGVVCMDAGGCVLLTRF---------------------------------PD 66
           LEEI KVP+GVV MD  GCV L RF                                 PD
Sbjct: 636 LEEILKVPKGVVRMDTRGCVSLARFPNNIPDFISCDDNVEYDKKDGVIKQLILMNCDIPD 695

Query: 67  --------------YIPDFISCEG----------NLEDEKSFGEFKQLILMNYDIPDWCR 126
                         ++ D++S +           ++ ++    +    +L   DI  W R
Sbjct: 696 WCKYKSMNDSVTFDFLADYLSWKRKAFIALCVKFHVTNDHELVKLNCRVLFINDIEVWSR 755

Query: 127 FEV------ISSGEYLWMPVVDIKSSR-------DILDRVTVLFDVRV--PKRQLLHVCD 135
             +      +S GE LWM V+     R       DI+D ++  F + +   K  LL   +
Sbjct: 756 MSISNFNFWLSRGECLWMAVLHPCMHRLINPYGDDIMD-ISPNFSIGILDDKITLLFEVN 815


HSP 2 Score: 92.4 bits (228), Expect = 6.4e-16
Identity = 43/65 (66.15%), Postives = 51/65 (78.46%), Query Frame = 1 

Query: 7   LEEIPKVPEGVVCMDAGGCVLLTRFPDYIPDFISCEGNLEDEKSFGEFKQLILMNYDIPD 66
           LEEI KVP+GVV MD  GCV L RFP+ IPDFISC+ N+E +K  G  KQLILMN DIPD
Sbjct: 825 LEEILKVPKGVVRMDTRGCVSLARFPNNIPDFISCDDNVEYDKKDGVIKQLILMNCDIPD 884

Query: 67  WCRFE 72
           WC+++
Sbjct: 885 WCKYK 889

The following BLAST results are available for this feature:
BLAST of Csa2G020880 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LFN6_CUCSA1.0e-73100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_2G020880 PE=4 SV=1[more]
A0A0A0LJK8_CUCSA4.7e-1854.65Uncharacterized protein OS=Cucumis sativus GN=Csa_2G075330 PE=4 SV=1[more]
A0A0A0LJ96_CUCSA4.4e-1666.15Uncharacterized protein OS=Cucumis sativus GN=Csa_2G059700 PE=4 SV=1[more]
A0A0A0LJ96_CUCSA1.5e-0328.00Uncharacterized protein OS=Cucumis sativus GN=Csa_2G059700 PE=4 SV=1[more]
E7CHD4_CUCSA6.4e-1552.50Putative NBS-LRR protein OS=Cucumis sativus PE=3 SV=1[more]
BLAST of Csa2G020880 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700205746|gb|KGN60865.1|1.5e-73100.00hypothetical protein Csa_2G020880 [Cucumis sativus][more]
gi|659071584|ref|XP_008460753.1|3.0e-1856.32PREDICTED: TMV resistance protein N-like [Cucumis melo][more]
gi|659071584|ref|XP_008460753.1|5.6e-0443.90PREDICTED: TMV resistance protein N-like [Cucumis melo][more]
gi|778674065|ref|XP_011650121.1|6.4e-1666.15PREDICTED: protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1-like [Cucumis sativus][more]
gi|778674065|ref|XP_011650121.1|2.1e-0328.00PREDICTED: protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1-like [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0032559 adenyl ribonucleotide binding
molecular_function GO:0043168 anion binding
molecular_function GO:0032550 purine ribonucleoside binding
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU135479cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa2G020880.1Csa2G020880.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU135479CU135479transcribed_cluster


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa2G020880MELO3C004288Melon (DHL92) v3.5.1cumeB144
Csa2G020880ClCG02G016120Watermelon (Charleston Gray)cuwcgB122
Csa2G020880Lsi11G005050Bottle gourd (USVL1VR-Ls)culsiB098
Csa2G020880MELO3C004311.2Melon (DHL92) v3.6.1cumedB132
Csa2G020880Cla97C02G041950Watermelon (97103) v2cuwmbB118
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa2G020880Silver-seed gourdcarcuB0735
Csa2G020880Cucumber (Gy14) v1cgycuB096
Csa2G020880Cucurbita maxima (Rimu)cmacuB173
Csa2G020880Cucurbita maxima (Rimu)cmacuB791
Csa2G020880Cucurbita moschata (Rifu)cmocuB157
Csa2G020880Cucurbita moschata (Rifu)cmocuB783
Csa2G020880Melon (DHL92) v3.5.1cumeB139
Csa2G020880Watermelon (97103) v1cuwmB147
Csa2G020880Cucurbita pepo (Zucchini)cpecuB103
Csa2G020880Cucurbita pepo (Zucchini)cpecuB820
Csa2G020880Cucumber (Gy14) v2cgybcuB056