Csa2G003570 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa2G003570
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr2 : 676477 .. 676791 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATAAATGCAACATTTCAAGAGCTCGAATTGTGTGGTTGGACGCCATTAATGGCTGCAGCGACAGGAACCAGAGGGACCCATCTCACCCATCCATTTCATTCAGCTACCATTCCCACACACAAAAAAGGACTCTCGTTTTGTGCATTCCAAAAACCTTTGTCTCTGAGGTTTGAAATTGAAAACATCTCTCTCGAAAGAAACAAAGAAATTTCAGTAGACTTAAAAGCTACTTTTCACTGTAAATCCAAGTCCCTTTTCCCCATTTCTGCCATCGTTACACTTCGAGTCCTTCTTCCTGCTTTACACCTTTAA

mRNA sequence

ATGATAAATGCAACATTTCAAGAGCTCGAATTGTGTGGTTGGACGCCATTAATGGCTGCAGCGACAGGAACCAGAGGGACCCATCTCACCCATCCATTTCATTCAGCTACCATTCCCACACACAAAAAAGGACTCTCGTTTTGTGCATTCCAAAAACCTTTGTCTCTGAGGTTTGAAATTGAAAACATCTCTCTCGAAAGAAACAAAGAAATTTCAGTAGACTTAAAAGCTACTTTTCACTGTAAATCCAAGTCCCTTTTCCCCATTTCTGCCATCGTTACACTTCGAGTCCTTCTTCCTGCTTTACACCTTTAA

Coding sequence (CDS)

ATGATAAATGCAACATTTCAAGAGCTCGAATTGTGTGGTTGGACGCCATTAATGGCTGCAGCGACAGGAACCAGAGGGACCCATCTCACCCATCCATTTCATTCAGCTACCATTCCCACACACAAAAAAGGACTCTCGTTTTGTGCATTCCAAAAACCTTTGTCTCTGAGGTTTGAAATTGAAAACATCTCTCTCGAAAGAAACAAAGAAATTTCAGTAGACTTAAAAGCTACTTTTCACTGTAAATCCAAGTCCCTTTTCCCCATTTCTGCCATCGTTACACTTCGAGTCCTTCTTCCTGCTTTACACCTTTAA

Protein sequence

MINATFQELELCGWTPLMAAATGTRGTHLTHPFHSATIPTHKKGLSFCAFQKPLSLRFEIENISLERNKEISVDLKATFHCKSKSLFPISAIVTLRVLLPALHL*
Homology
[Close]
BLAST of Csa2G003570 vs. TrEMBL
Match: A0A0A0LF06_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G003570 PE=4 SV=1)

HSP 1 Score: 213.0 bits (541), Expect = 1.7e-52
Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 1 

Query: 1   MINATFQELELCGWTPLMAAATGTRGTHLTHPFHSATIPTHKKGLSFCAFQKPLSLRFEI 60
           MINATFQELELCGWTPLMAAATGTRGTHLTHPFHSATIPTHKKGLSFCAFQKPLSLRFEI
Sbjct: 1   MINATFQELELCGWTPLMAAATGTRGTHLTHPFHSATIPTHKKGLSFCAFQKPLSLRFEI 60

Query: 61  ENISLERNKEISVDLKATFHCKSKSLFPISAIVTLRVLLPALHL 105
           ENISLERNKEISVDLKATFHCKSKSLFPISAIVTLRVLLPALHL
Sbjct: 61  ENISLERNKEISVDLKATFHCKSKSLFPISAIVTLRVLLPALHL 104

[Close]
BLAST of Csa2G003570 vs. NCBI nr
Match: gi|700205486|gb|KGN60605.1| (hypothetical protein Csa_2G003570 [Cucumis sativus])

HSP 1 Score: 213.0 bits (541), Expect = 2.5e-52
Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 1 

Query: 1   MINATFQELELCGWTPLMAAATGTRGTHLTHPFHSATIPTHKKGLSFCAFQKPLSLRFEI 60
           MINATFQELELCGWTPLMAAATGTRGTHLTHPFHSATIPTHKKGLSFCAFQKPLSLRFEI
Sbjct: 1   MINATFQELELCGWTPLMAAATGTRGTHLTHPFHSATIPTHKKGLSFCAFQKPLSLRFEI 60

Query: 61  ENISLERNKEISVDLKATFHCKSKSLFPISAIVTLRVLLPALHL 105
           ENISLERNKEISVDLKATFHCKSKSLFPISAIVTLRVLLPALHL
Sbjct: 61  ENISLERNKEISVDLKATFHCKSKSLFPISAIVTLRVLLPALHL 104

The following BLAST results are available for this feature:
BLAST of Csa2G003570 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LF06_CUCSA1.7e-52100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_2G003570 PE=4 SV=1[more]
BLAST of Csa2G003570 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700205486|gb|KGN60605.1|2.5e-52100.00hypothetical protein Csa_2G003570 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU101907cucumber EST collection version 3.0transcribed_cluster
CU116927cucumber EST collection version 3.0transcribed_cluster
CU142091cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa2G003570.1Csa2G003570.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU101907CU101907transcribed_cluster
CU116927CU116927transcribed_cluster
CU142091CU142091transcribed_cluster


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa2G003570Watermelon (97103) v2cuwmbB103
Csa2G003570Watermelon (97103) v2cuwmbB149
Csa2G003570Watermelon (97103) v2cuwmbB156
Csa2G003570Wax gourdcuwgoB131
Csa2G003570Wax gourdcuwgoB144
Csa2G003570Wax gourdcuwgoB214
Csa2G003570Cucumber (Gy14) v1cgycuB150
Csa2G003570Cucurbita maxima (Rimu)cmacuB075
Csa2G003570Cucurbita maxima (Rimu)cmacuB119
Csa2G003570Cucurbita maxima (Rimu)cmacuB173
Csa2G003570Cucurbita maxima (Rimu)cmacuB791
Csa2G003570Cucurbita moschata (Rifu)cmocuB065
Csa2G003570Cucurbita moschata (Rifu)cmocuB105
Csa2G003570Cucurbita moschata (Rifu)cmocuB157
Csa2G003570Cucurbita moschata (Rifu)cmocuB783
Csa2G003570Melon (DHL92) v3.5.1cumeB129
Csa2G003570Melon (DHL92) v3.5.1cumeB140
Csa2G003570Watermelon (Charleston Gray)cuwcgB096
Csa2G003570Watermelon (Charleston Gray)cuwcgB156
Csa2G003570Watermelon (Charleston Gray)cuwcgB163
Csa2G003570Watermelon (97103) v1cuwmB119
Csa2G003570Watermelon (97103) v1cuwmB162
Csa2G003570Watermelon (97103) v1cuwmB174
Csa2G003570Cucurbita pepo (Zucchini)cpecuB103
Csa2G003570Cucurbita pepo (Zucchini)cpecuB370
Csa2G003570Cucurbita pepo (Zucchini)cpecuB662
Csa2G003570Cucurbita pepo (Zucchini)cpecuB821
Csa2G003570Bottle gourd (USVL1VR-Ls)culsiB098
Csa2G003570Bottle gourd (USVL1VR-Ls)culsiB131
Csa2G003570Cucumber (Gy14) v2cgybcuB056
Csa2G003570Melon (DHL92) v3.6.1cumedB109
Csa2G003570Melon (DHL92) v3.6.1cumedB133
Csa2G003570Silver-seed gourdcarcuB0042
Csa2G003570Silver-seed gourdcarcuB0139
Csa2G003570Silver-seed gourdcarcuB0217
Csa2G003570Silver-seed gourdcarcuB0598
Csa2G003570Silver-seed gourdcarcuB0914