Csa2G000430 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa2G000430
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr2 : 241989 .. 242411 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTGGGTGAAGTGACCGAGAGCTTTGTTGAAGTCGTGGCGAAGATGGTGGAGGAGCAAAAAATTAAAATAATTGGATTTCATGCTGCTTTCACGTTTGCTATTGCAGCGCTGTCGGTACAAGCTAAAGCTAAACTCCCTGATTCTTTTGAGTTCGTATCCATTACCAGTTTACTTTGTTTACTGTGTTTTGTGTCTGCAATGATAATAGATTTCAGTTTTAAGACCTTTGCAAAGGTCCTATACTTTCTAGGTGCCTTCTTTTGTATGACCAGTTACTTAATAGCAGCTGCGATCCCCAGCCAAATGTACTTCCATGTCCTTCTAATTCTTCTCTTCCTTATCTCTTGCATCACACTTGTTATACTCATGTCCAACACATGCAGCCCTCCTAATTCCACAACCAATGATCTTCCTCTCTAA

mRNA sequence

ATGTTGGGTGAAGTGACCGAGAGCTTTGTTGAAGTCGTGGCGAAGATGGTGGAGGAGCAAAAAATTAAAATAATTGGATTTCATGCTGCTTTCACGTTTGCTATTGCAGCGCTGTCGGTACAAGCTAAAGCTAAACTCCCTGATTCTTTTGAGTTCGTATCCATTACCAGTTTACTTTGTTTACTGTGTTTTGTGTCTGCAATGATAATAGATTTCAGTTTTAAGACCTTTGCAAAGGTCCTATACTTTCTAGGTGCCTTCTTTTGTATGACCAGTTACTTAATAGCAGCTGCGATCCCCAGCCAAATGTACTTCCATGTCCTTCTAATTCTTCTCTTCCTTATCTCTTGCATCACACTTGTTATACTCATGTCCAACACATGCAGCCCTCCTAATTCCACAACCAATGATCTTCCTCTCTAA

Coding sequence (CDS)

ATGTTGGGTGAAGTGACCGAGAGCTTTGTTGAAGTCGTGGCGAAGATGGTGGAGGAGCAAAAAATTAAAATAATTGGATTTCATGCTGCTTTCACGTTTGCTATTGCAGCGCTGTCGGTACAAGCTAAAGCTAAACTCCCTGATTCTTTTGAGTTCGTATCCATTACCAGTTTACTTTGTTTACTGTGTTTTGTGTCTGCAATGATAATAGATTTCAGTTTTAAGACCTTTGCAAAGGTCCTATACTTTCTAGGTGCCTTCTTTTGTATGACCAGTTACTTAATAGCAGCTGCGATCCCCAGCCAAATGTACTTCCATGTCCTTCTAATTCTTCTCTTCCTTATCTCTTGCATCACACTTGTTATACTCATGTCCAACACATGCAGCCCTCCTAATTCCACAACCAATGATCTTCCTCTCTAA

Protein sequence

MLGEVTESFVEVVAKMVEEQKIKIIGFHAAFTFAIAALSVQAKAKLPDSFEFVSITSLLCLLCFVSAMIIDFSFKTFAKVLYFLGAFFCMTSYLIAAAIPSQMYFHVLLILLFLISCITLVILMSNTCSPPNSTTNDLPL*
Homology
[Close]
BLAST of Csa2G000430 vs. TrEMBL
Match: A0A0A0LEV1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G000430 PE=4 SV=1)

HSP 1 Score: 272.7 bits (696), Expect = 2.5e-70
Identity = 140/140 (100.00%), Postives = 140/140 (100.00%), Query Frame = 1 

Query: 1   MLGEVTESFVEVVAKMVEEQKIKIIGFHAAFTFAIAALSVQAKAKLPDSFEFVSITSLLC 60
           MLGEVTESFVEVVAKMVEEQKIKIIGFHAAFTFAIAALSVQAKAKLPDSFEFVSITSLLC
Sbjct: 1   MLGEVTESFVEVVAKMVEEQKIKIIGFHAAFTFAIAALSVQAKAKLPDSFEFVSITSLLC 60

Query: 61  LLCFVSAMIIDFSFKTFAKVLYFLGAFFCMTSYLIAAAIPSQMYFHVLLILLFLISCITL 120
           LLCFVSAMIIDFSFKTFAKVLYFLGAFFCMTSYLIAAAIPSQMYFHVLLILLFLISCITL
Sbjct: 61  LLCFVSAMIIDFSFKTFAKVLYFLGAFFCMTSYLIAAAIPSQMYFHVLLILLFLISCITL 120

Query: 121 VILMSNTCSPPNSTTNDLPL 141
           VILMSNTCSPPNSTTNDLPL
Sbjct: 121 VILMSNTCSPPNSTTNDLPL 140

[Close]
BLAST of Csa2G000430 vs. TrEMBL
Match: A0A0A0LCY2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G851175 PE=4 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 1.8e-23
Identity = 63/132 (47.73%), Postives = 88/132 (66.67%), Query Frame = 1 

Query: 10  VEVVAKMVEEQKIKIIGFHAAFTFAIAALSVQAKAKLPDSFEFVSITSLLCLLCFVSAMI 69
           +EVVA+MVEE+K  IIGF  +    IA +SVQ K KLP+SF+F+SI  L+C L    A +
Sbjct: 24  LEVVAEMVEERKEMIIGFCLSSAIGIATVSVQTKTKLPNSFQFLSIAVLICFLSVGFARM 83

Query: 70  IDFSFKTFAKVLYFLGAFFCMTSYLIAAAIPSQMYFHVLLILLFLISCITLVILMSNTCS 129
           I   FKT +K+LY  G F C T   IA AIP   +FH+++I+L+ I CI  V+L+S T +
Sbjct: 84  ISSIFKTLSKILYCFGGFLCATCCFIATAIPYDTHFHIIVIVLYSIFCIIFVMLISITHN 143

Query: 130 PPN-STTNDLPL 141
           P + S+++ LPL
Sbjct: 144 PSSPSSSHTLPL 155

[Close]
BLAST of Csa2G000430 vs. TrEMBL
Match: A0A0A0LQP5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G040510 PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 1.3e-15
Identity = 52/131 (39.69%), Postives = 80/131 (61.07%), Query Frame = 1 

Query: 10  VEVVAKMVEEQKIKIIGFHAAFTFAIAALSVQAKAKLPDSFEFVSITSLLCLLCFVSAMI 69
           +E+VA+ VEE+K  IIG   +    I   SVQ K KLP+SF+ +S+  LLC +  V A +
Sbjct: 26  LEIVAETVEERKEFIIGLCVSSAIGIVTTSVQIKTKLPNSFQCLSMPILLCFVSVVFARM 85

Query: 70  IDFSFKTFAKVLYFLGAFFCMTSYLIAAAIP-SQMYFHVLLILL---FLISCITLVILMS 129
           I+  F+T +++LY +G F C T+  IA AI     +FH ++I+L   F I CI  +I +S
Sbjct: 86  IESVFRTLSEILYCVGDFMCATTCFIATAISYDDAHFHTIVIVLYSIFCIICIIFIIFIS 145

Query: 130 NTCSPPNSTTN 137
            T + P+S ++
Sbjct: 146 ITHNDPSSPSS 156

[Close]
BLAST of Csa2G000430 vs. TrEMBL
Match: A0A0A0LQB6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G041520 PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 4.1e-12
Identity = 44/124 (35.48%), Postives = 72/124 (58.06%), Query Frame = 1 

Query: 12  VVAKMVEEQKIKIIGFHAAFTFAIAALSVQAKA--KLPDSFEFVSITSLLCLLCFVSAMI 71
           +VA+MVEE K  I+    +    IA +SVQ +   +LP +F+F+SI  LLC      A +
Sbjct: 39  MVAEMVEEWKEMIVALCVSSAIGIATVSVQIETNKQLPKTFQFLSIVVLLCFGFVGFAKM 98

Query: 72  IDFSFKTFAKVLYFLGAFFCMTSYLIAAAIPSQMYFHVLLILLFLISCITLVILMSNTCS 131
               FKT +K+LY +G F  +T++ IA AIP   YF +++ +L+L+ C   +++ +    
Sbjct: 99  TKPIFKTVSKILYCVGGFLGVTAFFIATAIPFAPYFQIIIFILYLLFCFIFMLITTIHNQ 158

Query: 132 PPNS 134
            P+S
Sbjct: 159 QPSS 162

[Close]
BLAST of Csa2G000430 vs. TrEMBL
Match: A0A0A0LSX4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G040520 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 1.5e-11
Identity = 45/98 (45.92%), Postives = 60/98 (61.22%), Query Frame = 1 

Query: 3   GEVTESFVEVVAKMVEEQKIKIIGFHAAFTFAIAALSVQAKAKLPDSFEFVSITSLLCLL 62
           G V  SF EV A+MVEE K  IIGF  +    IA +SV  K +LP+SF+ +SI  LLC +
Sbjct: 17  GGVRRSF-EVAAEMVEEWKDMIIGFCVSSAIGIATVSVHIKTELPNSFQLLSIAVLLCFV 76

Query: 63  CFVSAMIIDFSFKTFAKVLYFLGAFFCMTSYLIAAAIP 101
             V A +I+  F+T +K+LY +G     +S  IA AIP
Sbjct: 77  SVVFARMINSIFETLSKILYCVGGLLYASSCFIATAIP 113

[Close]
BLAST of Csa2G000430 vs. NCBI nr
Match: gi|700205416|gb|KGN60535.1| (hypothetical protein Csa_2G000430 [Cucumis sativus])

HSP 1 Score: 272.7 bits (696), Expect = 3.6e-70
Identity = 140/140 (100.00%), Postives = 140/140 (100.00%), Query Frame = 1 

Query: 1   MLGEVTESFVEVVAKMVEEQKIKIIGFHAAFTFAIAALSVQAKAKLPDSFEFVSITSLLC 60
           MLGEVTESFVEVVAKMVEEQKIKIIGFHAAFTFAIAALSVQAKAKLPDSFEFVSITSLLC
Sbjct: 1   MLGEVTESFVEVVAKMVEEQKIKIIGFHAAFTFAIAALSVQAKAKLPDSFEFVSITSLLC 60

Query: 61  LLCFVSAMIIDFSFKTFAKVLYFLGAFFCMTSYLIAAAIPSQMYFHVLLILLFLISCITL 120
           LLCFVSAMIIDFSFKTFAKVLYFLGAFFCMTSYLIAAAIPSQMYFHVLLILLFLISCITL
Sbjct: 61  LLCFVSAMIIDFSFKTFAKVLYFLGAFFCMTSYLIAAAIPSQMYFHVLLILLFLISCITL 120

Query: 121 VILMSNTCSPPNSTTNDLPL 141
           VILMSNTCSPPNSTTNDLPL
Sbjct: 121 VILMSNTCSPPNSTTNDLPL 140

[Close]
BLAST of Csa2G000430 vs. NCBI nr
Match: gi|700204732|gb|KGN59865.1| (hypothetical protein Csa_3G851175 [Cucumis sativus])

HSP 1 Score: 117.1 bits (292), Expect = 2.5e-23
Identity = 63/132 (47.73%), Postives = 88/132 (66.67%), Query Frame = 1 

Query: 10  VEVVAKMVEEQKIKIIGFHAAFTFAIAALSVQAKAKLPDSFEFVSITSLLCLLCFVSAMI 69
           +EVVA+MVEE+K  IIGF  +    IA +SVQ K KLP+SF+F+SI  L+C L    A +
Sbjct: 24  LEVVAEMVEERKEMIIGFCLSSAIGIATVSVQTKTKLPNSFQFLSIAVLICFLSVGFARM 83

Query: 70  IDFSFKTFAKVLYFLGAFFCMTSYLIAAAIPSQMYFHVLLILLFLISCITLVILMSNTCS 129
           I   FKT +K+LY  G F C T   IA AIP   +FH+++I+L+ I CI  V+L+S T +
Sbjct: 84  ISSIFKTLSKILYCFGGFLCATCCFIATAIPYDTHFHIIVIVLYSIFCIIFVMLISITHN 143

Query: 130 PPN-STTNDLPL 141
           P + S+++ LPL
Sbjct: 144 PSSPSSSHTLPL 155

[Close]
BLAST of Csa2G000430 vs. NCBI nr
Match: gi|700208992|gb|KGN64088.1| (hypothetical protein Csa_1G040510 [Cucumis sativus])

HSP 1 Score: 90.9 bits (224), Expect = 1.9e-15
Identity = 52/131 (39.69%), Postives = 80/131 (61.07%), Query Frame = 1 

Query: 10  VEVVAKMVEEQKIKIIGFHAAFTFAIAALSVQAKAKLPDSFEFVSITSLLCLLCFVSAMI 69
           +E+VA+ VEE+K  IIG   +    I   SVQ K KLP+SF+ +S+  LLC +  V A +
Sbjct: 26  LEIVAETVEERKEFIIGLCVSSAIGIVTTSVQIKTKLPNSFQCLSMPILLCFVSVVFARM 85

Query: 70  IDFSFKTFAKVLYFLGAFFCMTSYLIAAAIP-SQMYFHVLLILL---FLISCITLVILMS 129
           I+  F+T +++LY +G F C T+  IA AI     +FH ++I+L   F I CI  +I +S
Sbjct: 86  IESVFRTLSEILYCVGDFMCATTCFIATAISYDDAHFHTIVIVLYSIFCIICIIFIIFIS 145

Query: 130 NTCSPPNSTTN 137
            T + P+S ++
Sbjct: 146 ITHNDPSSPSS 156

[Close]
BLAST of Csa2G000430 vs. NCBI nr
Match: gi|700208994|gb|KGN64090.1| (hypothetical protein Csa_1G041520 [Cucumis sativus])

HSP 1 Score: 79.3 bits (194), Expect = 5.8e-12
Identity = 44/124 (35.48%), Postives = 72/124 (58.06%), Query Frame = 1 

Query: 12  VVAKMVEEQKIKIIGFHAAFTFAIAALSVQAKA--KLPDSFEFVSITSLLCLLCFVSAMI 71
           +VA+MVEE K  I+    +    IA +SVQ +   +LP +F+F+SI  LLC      A +
Sbjct: 39  MVAEMVEEWKEMIVALCVSSAIGIATVSVQIETNKQLPKTFQFLSIVVLLCFGFVGFAKM 98

Query: 72  IDFSFKTFAKVLYFLGAFFCMTSYLIAAAIPSQMYFHVLLILLFLISCITLVILMSNTCS 131
               FKT +K+LY +G F  +T++ IA AIP   YF +++ +L+L+ C   +++ +    
Sbjct: 99  TKPIFKTVSKILYCVGGFLGVTAFFIATAIPFAPYFQIIIFILYLLFCFIFMLITTIHNQ 158

Query: 132 PPNS 134
            P+S
Sbjct: 159 QPSS 162

[Close]
BLAST of Csa2G000430 vs. NCBI nr
Match: gi|700208993|gb|KGN64089.1| (hypothetical protein Csa_1G040520 [Cucumis sativus])

HSP 1 Score: 77.4 bits (189), Expect = 2.2e-11
Identity = 45/98 (45.92%), Postives = 60/98 (61.22%), Query Frame = 1 

Query: 3   GEVTESFVEVVAKMVEEQKIKIIGFHAAFTFAIAALSVQAKAKLPDSFEFVSITSLLCLL 62
           G V  SF EV A+MVEE K  IIGF  +    IA +SV  K +LP+SF+ +SI  LLC +
Sbjct: 17  GGVRRSF-EVAAEMVEEWKDMIIGFCVSSAIGIATVSVHIKTELPNSFQLLSIAVLLCFV 76

Query: 63  CFVSAMIIDFSFKTFAKVLYFLGAFFCMTSYLIAAAIP 101
             V A +I+  F+T +K+LY +G     +S  IA AIP
Sbjct: 77  SVVFARMINSIFETLSKILYCVGGLLYASSCFIATAIP 113

The following BLAST results are available for this feature:
BLAST of Csa2G000430 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LEV1_CUCSA2.5e-70100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_2G000430 PE=4 SV=1[more]
A0A0A0LCY2_CUCSA1.8e-2347.73Uncharacterized protein OS=Cucumis sativus GN=Csa_3G851175 PE=4 SV=1[more]
A0A0A0LQP5_CUCSA1.3e-1539.69Uncharacterized protein OS=Cucumis sativus GN=Csa_1G040510 PE=4 SV=1[more]
A0A0A0LQB6_CUCSA4.1e-1235.48Uncharacterized protein OS=Cucumis sativus GN=Csa_1G041520 PE=4 SV=1[more]
A0A0A0LSX4_CUCSA1.5e-1145.92Uncharacterized protein OS=Cucumis sativus GN=Csa_1G040520 PE=4 SV=1[more]
BLAST of Csa2G000430 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700205416|gb|KGN60535.1|3.6e-70100.00hypothetical protein Csa_2G000430 [Cucumis sativus][more]
gi|700204732|gb|KGN59865.1|2.5e-2347.73hypothetical protein Csa_3G851175 [Cucumis sativus][more]
gi|700208992|gb|KGN64088.1|1.9e-1539.69hypothetical protein Csa_1G040510 [Cucumis sativus][more]
gi|700208994|gb|KGN64090.1|5.8e-1235.48hypothetical protein Csa_1G041520 [Cucumis sativus][more]
gi|700208993|gb|KGN64089.1|2.2e-1145.92hypothetical protein Csa_1G040520 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa2G000430.1Csa2G000430.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa2G000430CSPI02G00430Wild cucumber (PI 183967)cpicuB065
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa2G000430Cucurbita pepo (Zucchini)cpecuB103
Csa2G000430Cucurbita pepo (Zucchini)cpecuB370
Csa2G000430Cucurbita pepo (Zucchini)cpecuB543
Csa2G000430Cucurbita pepo (Zucchini)cpecuB662
Csa2G000430Cucurbita pepo (Zucchini)cpecuB817
Csa2G000430Bottle gourd (USVL1VR-Ls)culsiB098
Csa2G000430Bottle gourd (USVL1VR-Ls)culsiB134
Csa2G000430Cucumber (Gy14) v2cgybcuB019
Csa2G000430Cucumber (Gy14) v2cgybcuB056
Csa2G000430Melon (DHL92) v3.6.1cumedB110
Csa2G000430Melon (DHL92) v3.6.1cumedB133
Csa2G000430Silver-seed gourdcarcuB0102
Csa2G000430Silver-seed gourdcarcuB0217
Csa2G000430Silver-seed gourdcarcuB0598
Csa2G000430Silver-seed gourdcarcuB0902
Csa2G000430Silver-seed gourdcarcuB0911
Csa2G000430Watermelon (97103) v2cuwmbB103
Csa2G000430Watermelon (97103) v2cuwmbB130
Csa2G000430Watermelon (97103) v2cuwmbB156
Csa2G000430Wax gourdcuwgoB129
Csa2G000430Wax gourdcuwgoB211
Csa2G000430Cucumber (Chinese Long) v2cucuB010
Csa2G000430Cucumber (Gy14) v1cgycuB150
Csa2G000430Cucurbita maxima (Rimu)cmacuB075
Csa2G000430Cucurbita maxima (Rimu)cmacuB119
Csa2G000430Cucurbita maxima (Rimu)cmacuB169
Csa2G000430Cucurbita maxima (Rimu)cmacuB791
Csa2G000430Cucurbita moschata (Rifu)cmocuB065
Csa2G000430Cucurbita moschata (Rifu)cmocuB105
Csa2G000430Cucurbita moschata (Rifu)cmocuB155
Csa2G000430Cucurbita moschata (Rifu)cmocuB783
Csa2G000430Melon (DHL92) v3.5.1cumeB110
Csa2G000430Melon (DHL92) v3.5.1cumeB140
Csa2G000430Watermelon (Charleston Gray)cuwcgB096
Csa2G000430Watermelon (Charleston Gray)cuwcgB134
Csa2G000430Watermelon (Charleston Gray)cuwcgB163
Csa2G000430Watermelon (97103) v1cuwmB114
Csa2G000430Watermelon (97103) v1cuwmB119
Csa2G000430Watermelon (97103) v1cuwmB162