Csa2G000310 (gene) Cucumber (Chinese Long) v2
The following sequences are available for this feature:
Legend: CDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGGTGACGACGGACGTCTGCATGCTATTGACGACGACGATGCTTCTTCCGCCCACCAGCTCTCTTACATCGATATCTACCCTCTCAGCAACTACTACTTTGGATCCAAAGAGCCTCTTCTTTTCAAGGATGAGACCTTGTCTGATCGTGTCCTCAGGATGAAATCCAAGTATCCATTCTCACTGTATTCCGTTGACTATACTTTGCTCTTTAATACCTTCCTTCAATTTCTCTATTCTGTTTTTATTTCTGCAGTTATGCTGCTCACGGATTGAGGACTTGCGTCGAAGCAGTTATGCTGGTTCGTTCTTTCCTTACAATTATTTCATTTTATATACCTCAATCTTTAGTCTCCTAAGTCCTATTGATTGATTTCTTTAAGGATATAGAGTTTTTATTCTGCCTCTGCTGTTACCGTCCTCCAATTGCTTGACGCGTACTTAATCGGTGGAGTTCTGATTTTGTTGGCTTCTGTCAGTGTAGTTATAACTTCTACTGCAGTTTAAACAGCATCGACTTATTTGGCCTATTCTCCCGCTATTCTTAGATTCATAGATCATGATGCCTGATTACTAAGAGTAGCTGTTATGAAATCAACAAATAAAATTAAGAAGAAAAGTCCGAATGGTAGGAAACTGACACTAAAATTTACATGTTCACTAACAGTGTGTGAGTTTATTATTAGAGAATAATTCAGGATACAGATGGTTTCTAACTTTAGAGTTTACTTAGCGCACTTTTCTAACTTCTGTAGTAAATACAATTTAGGTTTCAACAATAATTAAATTCACAAGTTCTGTCTCCTGGCGGTATTGGCTTTTGTGGGATTGGTTCTTTATTTTTGTGGAATGAACATGATTTTTTGCATCCACACACATGATCTCCATACTTCATTTCCGTTTTGGGAGAAATCATGGTAGGTCGGCCTTTTCTATCCATAATACCTTTTAGGAGATAAGTTTTAGAATTATAAACCTCAATTCAGGACGCTTTTTTCTGCTATACAATTTCTAGATGTACATTTCATCTTGCGATCAGAAACAGTGCTTAGTATTCTGCATTATAATTGAAAGTGCCTGTTGTTCTCAAATTAGGTTGAACTATTCAAGCATCCTCATTTGTTGCTGTTTCAAATACGTAATTCAATTTTCAAGCTTCCTGGTGGTCGCATAAGGCCCAATGAATCAGGTAAATTTGTTCTTTGGATCTCTTCTGCAGATGAGTTTGTCTGAGTTTAATAGTTATGCTGATATTTTATCATGGTTGATGATCTCAATTTACAGATATTGATGGCTTGACACGAAAGTTGACGAAGAAGCTTTCTGCCAACGGAGCCTCTGATGCATCTCATTGGGAGGTATTATAATGCCCAAATCCATTCCTTTAATTTCTGTACCATATTACTGCTGCGATTGTGAATGATGGAATTTGAAATTTTCTGCTTTTAACGTTTAGGTTAGTGAGTGCCTCGGTATGTGGTGGAGGCCTGACTTTGAGACCTTGCTCTTCCCGTATTTGTCCACTAATGTTAAAGGGGCCAAGGTAGTTATTTGAATGCGAATTACTTCCTTTAAACTACGACATGCATCATTTACCTTTAACTCACTTGCTCGCTCACTACCTGATGCAGGAGTGCACTAAACTTTTCTTGGTCAAGTTGCCGGAGAGTAGAAAATTTGTTGTGCCAAAGAACCTCAAGTTGATCGCAGTTCCTTTATGCCAAATTCACGAAAACCATAAGGTATCTTAATCAAGTCACTTTGTGGAAGTCCAATATGTAACATTTGAAAATCTTACTTTTTGTTGAAAGAATGAAAGAAAAGGACACAAGTTCGATTGTTGTATAAAAATGTGGTGCATAATCTAACTACATGTAAATCCCGTCATCTTGCAGACATATGGACCAATTATATCGGGCATTCCGCAGCTTCTTTCCAAGTTCTCCTTCAACATCATCGGAACCTAA ATGGGTGACGACGGACGTCTGCATGCTATTGACGACGACGATGCTTCTTCCGCCCACCAGCTCTCTTACATCGATATCTACCCTCTCAGCAACTACTACTTTGGATCCAAAGAGCCTCTTCTTTTCAAGGATGAGACCTTGTCTGATCGTGTCCTCAGGATGAAATCCAATTATGCTGCTCACGGATTGAGGACTTGCGTCGAAGCAGTTATGCTGGTTGAACTATTCAAGCATCCTCATTTGTTGCTGTTTCAAATACGTAATTCAATTTTCAAGCTTCCTGGTGGTCGCATAAGGCCCAATGAATCAGATATTGATGGCTTGACACGAAAGTTGACGAAGAAGCTTTCTGCCAACGGAGCCTCTGATGCATCTCATTGGGAGGTTAGTGAGTGCCTCGGTATGTGGTGGAGGCCTGACTTTGAGACCTTGCTCTTCCCGTATTTGTCCACTAATGTTAAAGGGGCCAAGGAGTGCACTAAACTTTTCTTGGTCAAGTTGCCGGAGAGTAGAAAATTTGTTGTGCCAAAGAACCTCAAGTTGATCGCAGTTCCTTTATGCCAAATTCACGAAAACCATAAGACATATGGACCAATTATATCGGGCATTCCGCAGCTTCTTTCCAAGTTCTCCTTCAACATCATCGGAACCTAA ATGGGTGACGACGGACGTCTGCATGCTATTGACGACGACGATGCTTCTTCCGCCCACCAGCTCTCTTACATCGATATCTACCCTCTCAGCAACTACTACTTTGGATCCAAAGAGCCTCTTCTTTTCAAGGATGAGACCTTGTCTGATCGTGTCCTCAGGATGAAATCCAATTATGCTGCTCACGGATTGAGGACTTGCGTCGAAGCAGTTATGCTGGTTGAACTATTCAAGCATCCTCATTTGTTGCTGTTTCAAATACGTAATTCAATTTTCAAGCTTCCTGGTGGTCGCATAAGGCCCAATGAATCAGATATTGATGGCTTGACACGAAAGTTGACGAAGAAGCTTTCTGCCAACGGAGCCTCTGATGCATCTCATTGGGAGGTTAGTGAGTGCCTCGGTATGTGGTGGAGGCCTGACTTTGAGACCTTGCTCTTCCCGTATTTGTCCACTAATGTTAAAGGGGCCAAGGAGTGCACTAAACTTTTCTTGGTCAAGTTGCCGGAGAGTAGAAAATTTGTTGTGCCAAAGAACCTCAAGTTGATCGCAGTTCCTTTATGCCAAATTCACGAAAACCATAAGACATATGGACCAATTATATCGGGCATTCCGCAGCTTCTTTCCAAGTTCTCCTTCAACATCATCGGAACCTAA MGDDGRLHAIDDDDASSAHQLSYIDIYPLSNYYFGSKEPLLFKDETLSDRVLRMKSNYAAHGLRTCVEAVMLVELFKHPHLLLFQIRNSIFKLPGGRIRPNESDIDGLTRKLTKKLSANGASDASHWEVSECLGMWWRPDFETLLFPYLSTNVKGAKECTKLFLVKLPESRKFVVPKNLKLIAVPLCQIHENHKTYGPIISGIPQLLSKFSFNIIGT*
BLAST of Csa2G000310 vs. Swiss-Prot
Match: CFIS1_ARATH (Pre-mRNA cleavage factor Im 25 kDa subunit 1 OS=Arabidopsis thaliana GN=CFIS1 PE=1 SV=1) HSP 1 Score: 300.8 bits (769), Expect = 1.2e-80 Identity = 147/223 (65.92%), Postives = 176/223 (78.92%), Query Frame = 1
BLAST of Csa2G000310 vs. Swiss-Prot
Match: CFIS2_ARATH (Pre-mRNA cleavage factor Im 25 kDa subunit 2 OS=Arabidopsis thaliana GN=CFIS2 PE=1 SV=1) HSP 1 Score: 226.5 bits (576), Expect = 2.9e-58 Identity = 102/194 (52.58%), Postives = 138/194 (71.13%), Query Frame = 1
BLAST of Csa2G000310 vs. Swiss-Prot
Match: CPSF5_DANRE (Cleavage and polyadenylation specificity factor subunit 5 OS=Danio rerio GN=cpsf5 PE=2 SV=1) HSP 1 Score: 183.0 bits (463), Expect = 3.6e-45 Identity = 87/191 (45.55%), Postives = 124/191 (64.92%), Query Frame = 1
BLAST of Csa2G000310 vs. Swiss-Prot
Match: CPSF5_BOVIN (Cleavage and polyadenylation specificity factor subunit 5 OS=Bos taurus GN=NUDT21 PE=2 SV=1) HSP 1 Score: 182.6 bits (462), Expect = 4.7e-45 Identity = 87/191 (45.55%), Postives = 124/191 (64.92%), Query Frame = 1
BLAST of Csa2G000310 vs. Swiss-Prot
Match: CPSF5_HUMAN (Cleavage and polyadenylation specificity factor subunit 5 OS=Homo sapiens GN=NUDT21 PE=1 SV=1) HSP 1 Score: 182.6 bits (462), Expect = 4.7e-45 Identity = 87/191 (45.55%), Postives = 124/191 (64.92%), Query Frame = 1
BLAST of Csa2G000310 vs. TrEMBL
Match: A0A0A0LIM0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G000310 PE=4 SV=1) HSP 1 Score: 445.7 bits (1145), Expect = 3.3e-122 Identity = 217/217 (100.00%), Postives = 217/217 (100.00%), Query Frame = 1
BLAST of Csa2G000310 vs. TrEMBL
Match: A0A061GLS2_THECC (CFIM-25 isoform 1 OS=Theobroma cacao GN=TCM_037594 PE=4 SV=1) HSP 1 Score: 334.7 bits (857), Expect = 8.3e-89 Identity = 163/217 (75.12%), Postives = 182/217 (83.87%), Query Frame = 1
BLAST of Csa2G000310 vs. TrEMBL
Match: A0A059CVR0_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_C03406 PE=4 SV=1) HSP 1 Score: 327.0 bits (837), Expect = 1.7e-86 Identity = 152/202 (75.25%), Postives = 175/202 (86.63%), Query Frame = 1
BLAST of Csa2G000310 vs. TrEMBL
Match: A0A067KCK7_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07443 PE=4 SV=1) HSP 1 Score: 323.9 bits (829), Expect = 1.5e-85 Identity = 156/208 (75.00%), Postives = 178/208 (85.58%), Query Frame = 1
BLAST of Csa2G000310 vs. TrEMBL
Match: D7TCL1_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_11s0016g01760 PE=4 SV=1) HSP 1 Score: 323.2 bits (827), Expect = 2.5e-85 Identity = 152/206 (73.79%), Postives = 177/206 (85.92%), Query Frame = 1
BLAST of Csa2G000310 vs. TAIR10
Match: AT4G29820.1 (AT4G29820.1 homolog of CFIM-25) HSP 1 Score: 300.8 bits (769), Expect = 6.7e-82 Identity = 147/223 (65.92%), Postives = 176/223 (78.92%), Query Frame = 1
BLAST of Csa2G000310 vs. TAIR10
Match: AT4G25550.1 (AT4G25550.1 Cleavage/polyadenylation specificity factor, 25kDa subunit) HSP 1 Score: 226.5 bits (576), Expect = 1.6e-59 Identity = 102/194 (52.58%), Postives = 138/194 (71.13%), Query Frame = 1
BLAST of Csa2G000310 vs. NCBI nr
Match: gi|449446606|ref|XP_004141062.1| (PREDICTED: pre-mRNA cleavage factor Im 25 kDa subunit 1 [Cucumis sativus]) HSP 1 Score: 445.7 bits (1145), Expect = 4.8e-122 Identity = 217/217 (100.00%), Postives = 217/217 (100.00%), Query Frame = 1
BLAST of Csa2G000310 vs. NCBI nr
Match: gi|659071385|ref|XP_008459551.1| (PREDICTED: cleavage and polyadenylation specificity factor subunit 5 [Cucumis melo]) HSP 1 Score: 425.6 bits (1093), Expect = 5.1e-116 Identity = 207/219 (94.52%), Postives = 214/219 (97.72%), Query Frame = 1
BLAST of Csa2G000310 vs. NCBI nr
Match: gi|590575606|ref|XP_007012734.1| (CFIM-25 isoform 1 [Theobroma cacao]) HSP 1 Score: 334.7 bits (857), Expect = 1.2e-88 Identity = 163/217 (75.12%), Postives = 182/217 (83.87%), Query Frame = 1
BLAST of Csa2G000310 vs. NCBI nr
Match: gi|1009143421|ref|XP_015889257.1| (PREDICTED: pre-mRNA cleavage factor Im 25 kDa subunit 1 [Ziziphus jujuba]) HSP 1 Score: 328.9 bits (842), Expect = 6.5e-87 Identity = 161/216 (74.54%), Postives = 178/216 (82.41%), Query Frame = 1
BLAST of Csa2G000310 vs. NCBI nr
Match: gi|629117355|gb|KCW82030.1| (hypothetical protein EUGRSUZ_C03406 [Eucalyptus grandis]) HSP 1 Score: 327.0 bits (837), Expect = 2.5e-86 Identity = 152/202 (75.25%), Postives = 175/202 (86.63%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
This gene is associated with the following unigenes:
The following mRNA feature(s) are a part of this gene:
The following transcribed_cluster feature(s) are associated with this gene:
Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
The following gene(s) are orthologous to this gene: The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene: |