Csa2G000310 (gene) Cucumber (Chinese Long) v2

NameCsa2G000310
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionCleavage and polyadenylation specificity factor subunit 5; contains IPR015797 (NUDIX hydrolase domain-like), IPR016706 (Cleavage/polyadenylation specificity factor subunit 5)
LocationChr2 : 176025 .. 177991 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTGACGACGGACGTCTGCATGCTATTGACGACGACGATGCTTCTTCCGCCCACCAGCTCTCTTACATCGATATCTACCCTCTCAGCAACTACTACTTTGGATCCAAAGAGCCTCTTCTTTTCAAGGATGAGACCTTGTCTGATCGTGTCCTCAGGATGAAATCCAAGTATCCATTCTCACTGTATTCCGTTGACTATACTTTGCTCTTTAATACCTTCCTTCAATTTCTCTATTCTGTTTTTATTTCTGCAGTTATGCTGCTCACGGATTGAGGACTTGCGTCGAAGCAGTTATGCTGGTTCGTTCTTTCCTTACAATTATTTCATTTTATATACCTCAATCTTTAGTCTCCTAAGTCCTATTGATTGATTTCTTTAAGGATATAGAGTTTTTATTCTGCCTCTGCTGTTACCGTCCTCCAATTGCTTGACGCGTACTTAATCGGTGGAGTTCTGATTTTGTTGGCTTCTGTCAGTGTAGTTATAACTTCTACTGCAGTTTAAACAGCATCGACTTATTTGGCCTATTCTCCCGCTATTCTTAGATTCATAGATCATGATGCCTGATTACTAAGAGTAGCTGTTATGAAATCAACAAATAAAATTAAGAAGAAAAGTCCGAATGGTAGGAAACTGACACTAAAATTTACATGTTCACTAACAGTGTGTGAGTTTATTATTAGAGAATAATTCAGGATACAGATGGTTTCTAACTTTAGAGTTTACTTAGCGCACTTTTCTAACTTCTGTAGTAAATACAATTTAGGTTTCAACAATAATTAAATTCACAAGTTCTGTCTCCTGGCGGTATTGGCTTTTGTGGGATTGGTTCTTTATTTTTGTGGAATGAACATGATTTTTTGCATCCACACACATGATCTCCATACTTCATTTCCGTTTTGGGAGAAATCATGGTAGGTCGGCCTTTTCTATCCATAATACCTTTTAGGAGATAAGTTTTAGAATTATAAACCTCAATTCAGGACGCTTTTTTCTGCTATACAATTTCTAGATGTACATTTCATCTTGCGATCAGAAACAGTGCTTAGTATTCTGCATTATAATTGAAAGTGCCTGTTGTTCTCAAATTAGGTTGAACTATTCAAGCATCCTCATTTGTTGCTGTTTCAAATACGTAATTCAATTTTCAAGCTTCCTGGTGGTCGCATAAGGCCCAATGAATCAGGTAAATTTGTTCTTTGGATCTCTTCTGCAGATGAGTTTGTCTGAGTTTAATAGTTATGCTGATATTTTATCATGGTTGATGATCTCAATTTACAGATATTGATGGCTTGACACGAAAGTTGACGAAGAAGCTTTCTGCCAACGGAGCCTCTGATGCATCTCATTGGGAGGTATTATAATGCCCAAATCCATTCCTTTAATTTCTGTACCATATTACTGCTGCGATTGTGAATGATGGAATTTGAAATTTTCTGCTTTTAACGTTTAGGTTAGTGAGTGCCTCGGTATGTGGTGGAGGCCTGACTTTGAGACCTTGCTCTTCCCGTATTTGTCCACTAATGTTAAAGGGGCCAAGGTAGTTATTTGAATGCGAATTACTTCCTTTAAACTACGACATGCATCATTTACCTTTAACTCACTTGCTCGCTCACTACCTGATGCAGGAGTGCACTAAACTTTTCTTGGTCAAGTTGCCGGAGAGTAGAAAATTTGTTGTGCCAAAGAACCTCAAGTTGATCGCAGTTCCTTTATGCCAAATTCACGAAAACCATAAGGTATCTTAATCAAGTCACTTTGTGGAAGTCCAATATGTAACATTTGAAAATCTTACTTTTTGTTGAAAGAATGAAAGAAAAGGACACAAGTTCGATTGTTGTATAAAAATGTGGTGCATAATCTAACTACATGTAAATCCCGTCATCTTGCAGACATATGGACCAATTATATCGGGCATTCCGCAGCTTCTTTCCAAGTTCTCCTTCAACATCATCGGAACCTAA

mRNA sequence

ATGGGTGACGACGGACGTCTGCATGCTATTGACGACGACGATGCTTCTTCCGCCCACCAGCTCTCTTACATCGATATCTACCCTCTCAGCAACTACTACTTTGGATCCAAAGAGCCTCTTCTTTTCAAGGATGAGACCTTGTCTGATCGTGTCCTCAGGATGAAATCCAATTATGCTGCTCACGGATTGAGGACTTGCGTCGAAGCAGTTATGCTGGTTGAACTATTCAAGCATCCTCATTTGTTGCTGTTTCAAATACGTAATTCAATTTTCAAGCTTCCTGGTGGTCGCATAAGGCCCAATGAATCAGATATTGATGGCTTGACACGAAAGTTGACGAAGAAGCTTTCTGCCAACGGAGCCTCTGATGCATCTCATTGGGAGGTTAGTGAGTGCCTCGGTATGTGGTGGAGGCCTGACTTTGAGACCTTGCTCTTCCCGTATTTGTCCACTAATGTTAAAGGGGCCAAGGAGTGCACTAAACTTTTCTTGGTCAAGTTGCCGGAGAGTAGAAAATTTGTTGTGCCAAAGAACCTCAAGTTGATCGCAGTTCCTTTATGCCAAATTCACGAAAACCATAAGACATATGGACCAATTATATCGGGCATTCCGCAGCTTCTTTCCAAGTTCTCCTTCAACATCATCGGAACCTAA

Coding sequence (CDS)

ATGGGTGACGACGGACGTCTGCATGCTATTGACGACGACGATGCTTCTTCCGCCCACCAGCTCTCTTACATCGATATCTACCCTCTCAGCAACTACTACTTTGGATCCAAAGAGCCTCTTCTTTTCAAGGATGAGACCTTGTCTGATCGTGTCCTCAGGATGAAATCCAATTATGCTGCTCACGGATTGAGGACTTGCGTCGAAGCAGTTATGCTGGTTGAACTATTCAAGCATCCTCATTTGTTGCTGTTTCAAATACGTAATTCAATTTTCAAGCTTCCTGGTGGTCGCATAAGGCCCAATGAATCAGATATTGATGGCTTGACACGAAAGTTGACGAAGAAGCTTTCTGCCAACGGAGCCTCTGATGCATCTCATTGGGAGGTTAGTGAGTGCCTCGGTATGTGGTGGAGGCCTGACTTTGAGACCTTGCTCTTCCCGTATTTGTCCACTAATGTTAAAGGGGCCAAGGAGTGCACTAAACTTTTCTTGGTCAAGTTGCCGGAGAGTAGAAAATTTGTTGTGCCAAAGAACCTCAAGTTGATCGCAGTTCCTTTATGCCAAATTCACGAAAACCATAAGACATATGGACCAATTATATCGGGCATTCCGCAGCTTCTTTCCAAGTTCTCCTTCAACATCATCGGAACCTAA

Protein sequence

MGDDGRLHAIDDDDASSAHQLSYIDIYPLSNYYFGSKEPLLFKDETLSDRVLRMKSNYAAHGLRTCVEAVMLVELFKHPHLLLFQIRNSIFKLPGGRIRPNESDIDGLTRKLTKKLSANGASDASHWEVSECLGMWWRPDFETLLFPYLSTNVKGAKECTKLFLVKLPESRKFVVPKNLKLIAVPLCQIHENHKTYGPIISGIPQLLSKFSFNIIGT*
BLAST of Csa2G000310 vs. Swiss-Prot
Match: CFIS1_ARATH (Pre-mRNA cleavage factor Im 25 kDa subunit 1 OS=Arabidopsis thaliana GN=CFIS1 PE=1 SV=1)

HSP 1 Score: 300.8 bits (769), Expect = 1.2e-80
Identity = 147/223 (65.92%), Postives = 176/223 (78.92%), Query Frame = 1

Query: 1   MGDDGRLHAIDDDDASS--------AHQLSYIDIYPLSNYYFGSKEPLLFKDETLSDRVL 60
           MG++ R  A+D ++ S          H L  +D+YPLS+YYFGSKE L  KDE +SDRV+
Sbjct: 1   MGEEAR--ALDMEEISDNTTRRNDVVHDLM-VDLYPLSSYYFGSKEALRVKDEIISDRVI 60

Query: 61  RMKSNYAAHGLRTCVEAVMLVELFKHPHLLLFQIRNSIFKLPGGRIRPNESDIDGLTRKL 120
           R+KSNYAAHGLRTCVEAV+LVELFKHPH+LL Q RNSIFKLPGGR+RP ESDI+GL RKL
Sbjct: 61  RLKSNYAAHGLRTCVEAVLLVELFKHPHVLLLQYRNSIFKLPGGRLRPGESDIEGLKRKL 120

Query: 121 TKKLSANGASDASHWEVSECLGMWWRPDFETLLFPYLSTNVKGAKECTKLFLVKLPESRK 180
             KLS N     S +EV EC+GMWWRP+FETL++P+L  N+K  KECTKLFLV+LP  ++
Sbjct: 121 ASKLSVNENVGVSGYEVGECIGMWWRPNFETLMYPFLPPNIKHPKECTKLFLVRLPVHQQ 180

Query: 181 FVVPKNLKLIAVPLCQIHENHKTYGPIISGIPQLLSKFSFNII 216
           FVVPKN KL+AVPLCQ+HEN KTYGPI+S IP+LLSKFSFN++
Sbjct: 181 FVVPKNFKLLAVPLCQLHENEKTYGPIMSQIPKLLSKFSFNMM 220

BLAST of Csa2G000310 vs. Swiss-Prot
Match: CFIS2_ARATH (Pre-mRNA cleavage factor Im 25 kDa subunit 2 OS=Arabidopsis thaliana GN=CFIS2 PE=1 SV=1)

HSP 1 Score: 226.5 bits (576), Expect = 2.9e-58
Identity = 102/194 (52.58%), Postives = 138/194 (71.13%), Query Frame = 1

Query: 24  IDIYPLSNYYFGSKEPLLFKDETLSDRVLRMKSNYAAHGLRTCVEAVMLVELFKHPHLLL 83
           ++ YPLSNY FG+KEP L KD +++DR+ RMK NY   G+RT VE ++LV+   HPH+LL
Sbjct: 7   VNTYPLSNYSFGTKEPKLEKDTSVADRLARMKINYMKEGMRTSVEGILLVQEHNHPHILL 66

Query: 84  FQIRNSIFKLPGGRIRPNESDIDGLTRKLTKKLSANGASDASHWEVSECLGMWWRPDFET 143
            QI N+  KLPGGR++P E++ DGL RKLT KL  N A+    W V EC+  WWRP+FET
Sbjct: 67  LQIGNTFCKLPGGRLKPGENEADGLKRKLTSKLGGNSAALVPDWTVGECVATWWRPNFET 126

Query: 144 LLFPYLSTNVKGAKECTKLFLVKLPESRKFVVPKNLKLIAVPLCQIHENHKTYGPIISGI 203
           +++PY   ++   KEC +L++V L E   F VPKNLKL+AVPL ++++N + YGP+IS I
Sbjct: 127 MMYPYCPPHITKPKECKRLYIVHLSEKEYFAVPKNLKLLAVPLFELYDNVQRYGPVISTI 186

Query: 204 PQLLSKFSFNIIGT 218
           PQ LS+F FN+I +
Sbjct: 187 PQQLSRFHFNMISS 200

BLAST of Csa2G000310 vs. Swiss-Prot
Match: CPSF5_DANRE (Cleavage and polyadenylation specificity factor subunit 5 OS=Danio rerio GN=cpsf5 PE=2 SV=1)

HSP 1 Score: 183.0 bits (463), Expect = 3.6e-45
Identity = 87/191 (45.55%), Postives = 124/191 (64.92%), Query Frame = 1

Query: 24  IDIYPLSNYYFGSKEPLLFKDETLSDRVLRMKSNYAAHGLRTCVEAVMLVELFKHPHLLL 83
           I++YPL+NY FG+KEPL  KD +++ R  RM+  +   G+R  VE V++V   + PH+LL
Sbjct: 38  INLYPLTNYTFGTKEPLYEKDSSVAARFQRMREEFEKIGMRRTVEGVLIVHEHRLPHVLL 97

Query: 84  FQIRNSIFKLPGGRIRPNESDIDGLTRKLTKKLSANGASDA--SHWEVSECLGMWWRPDF 143
            Q+  + FKLPGG + P E +++GL R +T+ L   G  D     W + +C+G WWRP+F
Sbjct: 98  LQLGTTFFKLPGGELNPGEDEVEGLKRLMTEIL---GRQDGVKQDWVIDDCIGNWWRPNF 157

Query: 144 ETLLFPYLSTNVKGAKECTKLFLVKLPESRKFVVPKNLKLIAVPLCQIHENHKTYGPIIS 203
           E   +PY+  ++   KE  KLFLV+L E   F VPKN KL+A PL ++++N   YGPIIS
Sbjct: 158 EPPQYPYIPAHITKPKEHKKLFLVQLQEKALFAVPKNYKLVAAPLFELYDNAPGYGPIIS 217

Query: 204 GIPQLLSKFSF 213
            +PQLLS+F+F
Sbjct: 218 SLPQLLSRFNF 225

BLAST of Csa2G000310 vs. Swiss-Prot
Match: CPSF5_BOVIN (Cleavage and polyadenylation specificity factor subunit 5 OS=Bos taurus GN=NUDT21 PE=2 SV=1)

HSP 1 Score: 182.6 bits (462), Expect = 4.7e-45
Identity = 87/191 (45.55%), Postives = 124/191 (64.92%), Query Frame = 1

Query: 24  IDIYPLSNYYFGSKEPLLFKDETLSDRVLRMKSNYAAHGLRTCVEAVMLVELFKHPHLLL 83
           I++YPL+NY FG+KEPL  KD +++ R  RM+  +   G+R  VE V++V   + PH+LL
Sbjct: 37  INLYPLTNYTFGTKEPLYEKDSSVAARFQRMREEFDKIGMRRTVEGVLIVHEHRLPHVLL 96

Query: 84  FQIRNSIFKLPGGRIRPNESDIDGLTRKLTKKLSANGASDA--SHWEVSECLGMWWRPDF 143
            Q+  + FKLPGG + P E +++GL R +T+ L   G  D     W + +C+G WWRP+F
Sbjct: 97  LQLGTTFFKLPGGELNPGEDEVEGLKRLMTEIL---GRQDGVLQDWVIDDCIGNWWRPNF 156

Query: 144 ETLLFPYLSTNVKGAKECTKLFLVKLPESRKFVVPKNLKLIAVPLCQIHENHKTYGPIIS 203
           E   +PY+  ++   KE  KLFLV+L E   F VPKN KL+A PL ++++N   YGPIIS
Sbjct: 157 EPPQYPYIPAHITKPKEHKKLFLVQLQEKALFAVPKNYKLVAAPLFELYDNAPGYGPIIS 216

Query: 204 GIPQLLSKFSF 213
            +PQLLS+F+F
Sbjct: 217 SLPQLLSRFNF 224

BLAST of Csa2G000310 vs. Swiss-Prot
Match: CPSF5_HUMAN (Cleavage and polyadenylation specificity factor subunit 5 OS=Homo sapiens GN=NUDT21 PE=1 SV=1)

HSP 1 Score: 182.6 bits (462), Expect = 4.7e-45
Identity = 87/191 (45.55%), Postives = 124/191 (64.92%), Query Frame = 1

Query: 24  IDIYPLSNYYFGSKEPLLFKDETLSDRVLRMKSNYAAHGLRTCVEAVMLVELFKHPHLLL 83
           I++YPL+NY FG+KEPL  KD +++ R  RM+  +   G+R  VE V++V   + PH+LL
Sbjct: 37  INLYPLTNYTFGTKEPLYEKDSSVAARFQRMREEFDKIGMRRTVEGVLIVHEHRLPHVLL 96

Query: 84  FQIRNSIFKLPGGRIRPNESDIDGLTRKLTKKLSANGASDA--SHWEVSECLGMWWRPDF 143
            Q+  + FKLPGG + P E +++GL R +T+ L   G  D     W + +C+G WWRP+F
Sbjct: 97  LQLGTTFFKLPGGELNPGEDEVEGLKRLMTEIL---GRQDGVLQDWVIDDCIGNWWRPNF 156

Query: 144 ETLLFPYLSTNVKGAKECTKLFLVKLPESRKFVVPKNLKLIAVPLCQIHENHKTYGPIIS 203
           E   +PY+  ++   KE  KLFLV+L E   F VPKN KL+A PL ++++N   YGPIIS
Sbjct: 157 EPPQYPYIPAHITKPKEHKKLFLVQLQEKALFAVPKNYKLVAAPLFELYDNAPGYGPIIS 216

Query: 204 GIPQLLSKFSF 213
            +PQLLS+F+F
Sbjct: 217 SLPQLLSRFNF 224

BLAST of Csa2G000310 vs. TrEMBL
Match: A0A0A0LIM0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G000310 PE=4 SV=1)

HSP 1 Score: 445.7 bits (1145), Expect = 3.3e-122
Identity = 217/217 (100.00%), Postives = 217/217 (100.00%), Query Frame = 1

Query: 1   MGDDGRLHAIDDDDASSAHQLSYIDIYPLSNYYFGSKEPLLFKDETLSDRVLRMKSNYAA 60
           MGDDGRLHAIDDDDASSAHQLSYIDIYPLSNYYFGSKEPLLFKDETLSDRVLRMKSNYAA
Sbjct: 1   MGDDGRLHAIDDDDASSAHQLSYIDIYPLSNYYFGSKEPLLFKDETLSDRVLRMKSNYAA 60

Query: 61  HGLRTCVEAVMLVELFKHPHLLLFQIRNSIFKLPGGRIRPNESDIDGLTRKLTKKLSANG 120
           HGLRTCVEAVMLVELFKHPHLLLFQIRNSIFKLPGGRIRPNESDIDGLTRKLTKKLSANG
Sbjct: 61  HGLRTCVEAVMLVELFKHPHLLLFQIRNSIFKLPGGRIRPNESDIDGLTRKLTKKLSANG 120

Query: 121 ASDASHWEVSECLGMWWRPDFETLLFPYLSTNVKGAKECTKLFLVKLPESRKFVVPKNLK 180
           ASDASHWEVSECLGMWWRPDFETLLFPYLSTNVKGAKECTKLFLVKLPESRKFVVPKNLK
Sbjct: 121 ASDASHWEVSECLGMWWRPDFETLLFPYLSTNVKGAKECTKLFLVKLPESRKFVVPKNLK 180

Query: 181 LIAVPLCQIHENHKTYGPIISGIPQLLSKFSFNIIGT 218
           LIAVPLCQIHENHKTYGPIISGIPQLLSKFSFNIIGT
Sbjct: 181 LIAVPLCQIHENHKTYGPIISGIPQLLSKFSFNIIGT 217

BLAST of Csa2G000310 vs. TrEMBL
Match: A0A061GLS2_THECC (CFIM-25 isoform 1 OS=Theobroma cacao GN=TCM_037594 PE=4 SV=1)

HSP 1 Score: 334.7 bits (857), Expect = 8.3e-89
Identity = 163/217 (75.12%), Postives = 182/217 (83.87%), Query Frame = 1

Query: 1   MGDD--GRLHAIDDDDASSAHQLSYIDIYPLSNYYFGSKEPLLFKDETLSDRVLRMKSNY 60
           MGDD      A  +D +SS      +DIYPLS YYFGSKE ++FKDETLSDR+ RMKSNY
Sbjct: 1   MGDDTGAAAAATVNDHSSSGDHRKEVDIYPLSCYYFGSKETIVFKDETLSDRIKRMKSNY 60

Query: 61  AAHGLRTCVEAVMLVELFKHPHLLLFQIRNSIFKLPGGRIRPNESDIDGLTRKLTKKLSA 120
           AAHGLRT VEAV+LVELFKHPHLLL Q+RNSIFKLPGGR+RP ESDIDGL RKL++KLSA
Sbjct: 61  AAHGLRTSVEAVILVELFKHPHLLLLQVRNSIFKLPGGRLRPGESDIDGLRRKLSRKLSA 120

Query: 121 NGASDASHWEVSECLGMWWRPDFETLLFPYLSTNVKGAKECTKLFLVKLPESRKFVVPKN 180
           +     + WEV ECLGMWWR DFETLL+PYL  NVK  KECTKLFLV+LPESRKF+VPKN
Sbjct: 121 SEDDSETEWEVGECLGMWWRHDFETLLYPYLPPNVKKPKECTKLFLVRLPESRKFIVPKN 180

Query: 181 LKLIAVPLCQIHENHKTYGPIISGIPQLLSKFSFNII 216
           LKL+AVPLCQ+HENHKTYGPIISG+PQLLSKFS NII
Sbjct: 181 LKLLAVPLCQVHENHKTYGPIISGVPQLLSKFSINII 217

BLAST of Csa2G000310 vs. TrEMBL
Match: A0A059CVR0_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_C03406 PE=4 SV=1)

HSP 1 Score: 327.0 bits (837), Expect = 1.7e-86
Identity = 152/202 (75.25%), Postives = 175/202 (86.63%), Query Frame = 1

Query: 14  DASSAHQLSYIDIYPLSNYYFGSKEPLLFKDETLSDRVLRMKSNYAAHGLRTCVEAVMLV 73
           D     Q   +DIYPLS+YYFGSK+ L  ++ETL+DRV RMKS+YAAHGLRTCVEAV++V
Sbjct: 115 DGGGDDQARAMDIYPLSSYYFGSKDALALREETLADRVQRMKSHYAAHGLRTCVEAVIVV 174

Query: 74  ELFKHPHLLLFQIRNSIFKLPGGRIRPNESDIDGLTRKLTKKLSANGASDASHWEVSECL 133
           ELF+HPHLLL Q+RNS F+LPGGR+RP ESD++GL RKLT KLSANGA D + WE+ ECL
Sbjct: 175 ELFRHPHLLLLQVRNSTFQLPGGRLRPGESDVEGLKRKLTSKLSANGAGDETQWEIGECL 234

Query: 134 GMWWRPDFETLLFPYLSTNVKGAKECTKLFLVKLPESRKFVVPKNLKLIAVPLCQIHENH 193
           GMWWRPDFETLL+PYL  N+K  KECTKLFLVKLP SRKF+VPKNLKL+AVPLCQIHEN 
Sbjct: 235 GMWWRPDFETLLYPYLPPNIKKPKECTKLFLVKLPVSRKFIVPKNLKLLAVPLCQIHENL 294

Query: 194 KTYGPIISGIPQLLSKFSFNII 216
           KTYGPII+G+PQLLSKFSFNII
Sbjct: 295 KTYGPIIAGVPQLLSKFSFNII 316

BLAST of Csa2G000310 vs. TrEMBL
Match: A0A067KCK7_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07443 PE=4 SV=1)

HSP 1 Score: 323.9 bits (829), Expect = 1.5e-85
Identity = 156/208 (75.00%), Postives = 178/208 (85.58%), Query Frame = 1

Query: 10  IDDDDASSAHQLSYIDIYPLSNYYFGSKEPLLFKDETLSDRVLRMKSNYAAHGLRTCVEA 69
           +D+    S  Q S +DIYPLS+YYFG+K+PL FK+ETL+DRV RMKSNY AHGLRT VEA
Sbjct: 3   LDNGHEGSRDQGSVLDIYPLSSYYFGAKDPLSFKNETLADRVQRMKSNYLAHGLRTYVEA 62

Query: 70  VMLVELFKHPHLLLFQIRNSIFKLPGGRIRPNESDIDGLTRKLTKKLSANGASDASHWEV 129
           V+LVELFKHPHLLL QIRNSIF+LPGGR+RP ESDIDGL RKL++KLS N   D + WEV
Sbjct: 63  VILVELFKHPHLLLLQIRNSIFRLPGGRLRPGESDIDGLKRKLSRKLSGN--EDETDWEV 122

Query: 130 SECLGMWWRPDFETLLFPYLSTNVKGAKECTKLFLVKLPESRKFVVPKNLKLIAVPLCQI 189
            ECLGMWW+PDFETL +PY+  NVK  KECTKLFLV+LP SRKF+VPKNLKL+A+PLCQI
Sbjct: 123 DECLGMWWKPDFETLPYPYMPPNVKTPKECTKLFLVRLPMSRKFIVPKNLKLLAIPLCQI 182

Query: 190 HENHKTYGPIISGIPQLLSKFSFNIIGT 218
           HENHKTYG IISGIPQLLSKFSFNII +
Sbjct: 183 HENHKTYGSIISGIPQLLSKFSFNIINS 208

BLAST of Csa2G000310 vs. TrEMBL
Match: D7TCL1_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_11s0016g01760 PE=4 SV=1)

HSP 1 Score: 323.2 bits (827), Expect = 2.5e-85
Identity = 152/206 (73.79%), Postives = 177/206 (85.92%), Query Frame = 1

Query: 11  DDDDASSAHQLSYI-DIYPLSNYYFGSKEPLLFKDETLSDRVLRMKSNYAAHGLRTCVEA 70
           D D +SS    +++ DIYPLS YYFGSK+PLL K+ETL+DR+LRMKSNY+ +G RTCV A
Sbjct: 84  DGDRSSSGDSSNHVLDIYPLSCYYFGSKDPLLLKEETLADRILRMKSNYSRYGSRTCVVA 143

Query: 71  VMLVELFKHPHLLLFQIRNSIFKLPGGRIRPNESDIDGLTRKLTKKLSANGASDASHWEV 130
           V+LVELFKHPHLLL Q++NS FKLPGGR+RP ES+I+GL RKL++KLS N   D S WEV
Sbjct: 144 VILVELFKHPHLLLLQVKNSFFKLPGGRLRPGESEINGLKRKLSRKLSVNEDGDGSDWEV 203

Query: 131 SECLGMWWRPDFETLLFPYLSTNVKGAKECTKLFLVKLPESRKFVVPKNLKLIAVPLCQI 190
            ECLGMWWRPDFETLL+PYL  NVK  KECTKLFLVKLP SRKF+VPKNLKL+A+PLCQ+
Sbjct: 204 GECLGMWWRPDFETLLYPYLPPNVKNPKECTKLFLVKLPPSRKFIVPKNLKLLAIPLCQL 263

Query: 191 HENHKTYGPIISGIPQLLSKFSFNII 216
           HEN KTYGPII+G+PQLLSKFSFNII
Sbjct: 264 HENDKTYGPIIAGVPQLLSKFSFNII 289

BLAST of Csa2G000310 vs. TAIR10
Match: AT4G29820.1 (AT4G29820.1 homolog of CFIM-25)

HSP 1 Score: 300.8 bits (769), Expect = 6.7e-82
Identity = 147/223 (65.92%), Postives = 176/223 (78.92%), Query Frame = 1

Query: 1   MGDDGRLHAIDDDDASS--------AHQLSYIDIYPLSNYYFGSKEPLLFKDETLSDRVL 60
           MG++ R  A+D ++ S          H L  +D+YPLS+YYFGSKE L  KDE +SDRV+
Sbjct: 1   MGEEAR--ALDMEEISDNTTRRNDVVHDLM-VDLYPLSSYYFGSKEALRVKDEIISDRVI 60

Query: 61  RMKSNYAAHGLRTCVEAVMLVELFKHPHLLLFQIRNSIFKLPGGRIRPNESDIDGLTRKL 120
           R+KSNYAAHGLRTCVEAV+LVELFKHPH+LL Q RNSIFKLPGGR+RP ESDI+GL RKL
Sbjct: 61  RLKSNYAAHGLRTCVEAVLLVELFKHPHVLLLQYRNSIFKLPGGRLRPGESDIEGLKRKL 120

Query: 121 TKKLSANGASDASHWEVSECLGMWWRPDFETLLFPYLSTNVKGAKECTKLFLVKLPESRK 180
             KLS N     S +EV EC+GMWWRP+FETL++P+L  N+K  KECTKLFLV+LP  ++
Sbjct: 121 ASKLSVNENVGVSGYEVGECIGMWWRPNFETLMYPFLPPNIKHPKECTKLFLVRLPVHQQ 180

Query: 181 FVVPKNLKLIAVPLCQIHENHKTYGPIISGIPQLLSKFSFNII 216
           FVVPKN KL+AVPLCQ+HEN KTYGPI+S IP+LLSKFSFN++
Sbjct: 181 FVVPKNFKLLAVPLCQLHENEKTYGPIMSQIPKLLSKFSFNMM 220

BLAST of Csa2G000310 vs. TAIR10
Match: AT4G25550.1 (AT4G25550.1 Cleavage/polyadenylation specificity factor, 25kDa subunit)

HSP 1 Score: 226.5 bits (576), Expect = 1.6e-59
Identity = 102/194 (52.58%), Postives = 138/194 (71.13%), Query Frame = 1

Query: 24  IDIYPLSNYYFGSKEPLLFKDETLSDRVLRMKSNYAAHGLRTCVEAVMLVELFKHPHLLL 83
           ++ YPLSNY FG+KEP L KD +++DR+ RMK NY   G+RT VE ++LV+   HPH+LL
Sbjct: 7   VNTYPLSNYSFGTKEPKLEKDTSVADRLARMKINYMKEGMRTSVEGILLVQEHNHPHILL 66

Query: 84  FQIRNSIFKLPGGRIRPNESDIDGLTRKLTKKLSANGASDASHWEVSECLGMWWRPDFET 143
            QI N+  KLPGGR++P E++ DGL RKLT KL  N A+    W V EC+  WWRP+FET
Sbjct: 67  LQIGNTFCKLPGGRLKPGENEADGLKRKLTSKLGGNSAALVPDWTVGECVATWWRPNFET 126

Query: 144 LLFPYLSTNVKGAKECTKLFLVKLPESRKFVVPKNLKLIAVPLCQIHENHKTYGPIISGI 203
           +++PY   ++   KEC +L++V L E   F VPKNLKL+AVPL ++++N + YGP+IS I
Sbjct: 127 MMYPYCPPHITKPKECKRLYIVHLSEKEYFAVPKNLKLLAVPLFELYDNVQRYGPVISTI 186

Query: 204 PQLLSKFSFNIIGT 218
           PQ LS+F FN+I +
Sbjct: 187 PQQLSRFHFNMISS 200

BLAST of Csa2G000310 vs. NCBI nr
Match: gi|449446606|ref|XP_004141062.1| (PREDICTED: pre-mRNA cleavage factor Im 25 kDa subunit 1 [Cucumis sativus])

HSP 1 Score: 445.7 bits (1145), Expect = 4.8e-122
Identity = 217/217 (100.00%), Postives = 217/217 (100.00%), Query Frame = 1

Query: 1   MGDDGRLHAIDDDDASSAHQLSYIDIYPLSNYYFGSKEPLLFKDETLSDRVLRMKSNYAA 60
           MGDDGRLHAIDDDDASSAHQLSYIDIYPLSNYYFGSKEPLLFKDETLSDRVLRMKSNYAA
Sbjct: 1   MGDDGRLHAIDDDDASSAHQLSYIDIYPLSNYYFGSKEPLLFKDETLSDRVLRMKSNYAA 60

Query: 61  HGLRTCVEAVMLVELFKHPHLLLFQIRNSIFKLPGGRIRPNESDIDGLTRKLTKKLSANG 120
           HGLRTCVEAVMLVELFKHPHLLLFQIRNSIFKLPGGRIRPNESDIDGLTRKLTKKLSANG
Sbjct: 61  HGLRTCVEAVMLVELFKHPHLLLFQIRNSIFKLPGGRIRPNESDIDGLTRKLTKKLSANG 120

Query: 121 ASDASHWEVSECLGMWWRPDFETLLFPYLSTNVKGAKECTKLFLVKLPESRKFVVPKNLK 180
           ASDASHWEVSECLGMWWRPDFETLLFPYLSTNVKGAKECTKLFLVKLPESRKFVVPKNLK
Sbjct: 121 ASDASHWEVSECLGMWWRPDFETLLFPYLSTNVKGAKECTKLFLVKLPESRKFVVPKNLK 180

Query: 181 LIAVPLCQIHENHKTYGPIISGIPQLLSKFSFNIIGT 218
           LIAVPLCQIHENHKTYGPIISGIPQLLSKFSFNIIGT
Sbjct: 181 LIAVPLCQIHENHKTYGPIISGIPQLLSKFSFNIIGT 217

BLAST of Csa2G000310 vs. NCBI nr
Match: gi|659071385|ref|XP_008459551.1| (PREDICTED: cleavage and polyadenylation specificity factor subunit 5 [Cucumis melo])

HSP 1 Score: 425.6 bits (1093), Expect = 5.1e-116
Identity = 207/219 (94.52%), Postives = 214/219 (97.72%), Query Frame = 1

Query: 1   MGDDGRLHAI--DDDDASSAHQLSYIDIYPLSNYYFGSKEPLLFKDETLSDRVLRMKSNY 60
           MGDDGRLHAI  DDDDASSAHQLSYIDIYPLSNYYFGSKEPLLFKDETLSDR+LRMKSNY
Sbjct: 1   MGDDGRLHAIDDDDDDASSAHQLSYIDIYPLSNYYFGSKEPLLFKDETLSDRILRMKSNY 60

Query: 61  AAHGLRTCVEAVMLVELFKHPHLLLFQIRNSIFKLPGGRIRPNESDIDGLTRKLTKKLSA 120
           AA+GLRTCVEAVMLVELFKHPHLLLFQIRNSIFKLPGGR+RPNESDIDGLTRKL+KKL A
Sbjct: 61  AAYGLRTCVEAVMLVELFKHPHLLLFQIRNSIFKLPGGRLRPNESDIDGLTRKLSKKLCA 120

Query: 121 NGASDASHWEVSECLGMWWRPDFETLLFPYLSTNVKGAKECTKLFLVKLPESRKFVVPKN 180
           NGASDAS WEV+ECLGMWWRPDFETLLFPYLSTNVKGAKEC KLFLVKLPES+KFVVPKN
Sbjct: 121 NGASDASDWEVNECLGMWWRPDFETLLFPYLSTNVKGAKECAKLFLVKLPESKKFVVPKN 180

Query: 181 LKLIAVPLCQIHENHKTYGPIISGIPQLLSKFSFNIIGT 218
           LKLIAVPLCQIHENHKTYGP+ISGIPQLLSKFSFNIIGT
Sbjct: 181 LKLIAVPLCQIHENHKTYGPVISGIPQLLSKFSFNIIGT 219

BLAST of Csa2G000310 vs. NCBI nr
Match: gi|590575606|ref|XP_007012734.1| (CFIM-25 isoform 1 [Theobroma cacao])

HSP 1 Score: 334.7 bits (857), Expect = 1.2e-88
Identity = 163/217 (75.12%), Postives = 182/217 (83.87%), Query Frame = 1

Query: 1   MGDD--GRLHAIDDDDASSAHQLSYIDIYPLSNYYFGSKEPLLFKDETLSDRVLRMKSNY 60
           MGDD      A  +D +SS      +DIYPLS YYFGSKE ++FKDETLSDR+ RMKSNY
Sbjct: 1   MGDDTGAAAAATVNDHSSSGDHRKEVDIYPLSCYYFGSKETIVFKDETLSDRIKRMKSNY 60

Query: 61  AAHGLRTCVEAVMLVELFKHPHLLLFQIRNSIFKLPGGRIRPNESDIDGLTRKLTKKLSA 120
           AAHGLRT VEAV+LVELFKHPHLLL Q+RNSIFKLPGGR+RP ESDIDGL RKL++KLSA
Sbjct: 61  AAHGLRTSVEAVILVELFKHPHLLLLQVRNSIFKLPGGRLRPGESDIDGLRRKLSRKLSA 120

Query: 121 NGASDASHWEVSECLGMWWRPDFETLLFPYLSTNVKGAKECTKLFLVKLPESRKFVVPKN 180
           +     + WEV ECLGMWWR DFETLL+PYL  NVK  KECTKLFLV+LPESRKF+VPKN
Sbjct: 121 SEDDSETEWEVGECLGMWWRHDFETLLYPYLPPNVKKPKECTKLFLVRLPESRKFIVPKN 180

Query: 181 LKLIAVPLCQIHENHKTYGPIISGIPQLLSKFSFNII 216
           LKL+AVPLCQ+HENHKTYGPIISG+PQLLSKFS NII
Sbjct: 181 LKLLAVPLCQVHENHKTYGPIISGVPQLLSKFSINII 217

BLAST of Csa2G000310 vs. NCBI nr
Match: gi|1009143421|ref|XP_015889257.1| (PREDICTED: pre-mRNA cleavage factor Im 25 kDa subunit 1 [Ziziphus jujuba])

HSP 1 Score: 328.9 bits (842), Expect = 6.5e-87
Identity = 161/216 (74.54%), Postives = 178/216 (82.41%), Query Frame = 1

Query: 2   GDDGRLHAIDDDDASSAHQLSYIDIYPLSNYYFGSKEPLLFKDETLSDRVLRMKSNYAAH 61
           GD  R H        S  Q   IDIYPLS+YYFGSKE L FK+ETL+DR  R+KSNYAAH
Sbjct: 16  GDRTRTHN------QSQSQSRVIDIYPLSSYYFGSKEALHFKEETLADRTQRLKSNYAAH 75

Query: 62  GLRTCVEAVMLVELFKHPHLLLFQIRNSIFKLPGGRIRPNESDIDGLTRKLTKKLSANGA 121
           GLRT VEAV++VELFKHPHLLL Q++NS FKLPGGR+RP ESDIDGL RKL++KLS +  
Sbjct: 76  GLRTSVEAVIVVELFKHPHLLLLQVKNSFFKLPGGRLRPGESDIDGLRRKLSRKLSLSEN 135

Query: 122 SDASHWEVSECLGMWWRPDFETLLFPYLSTNVKGAKECTKLFLVKLPESRKFVVPKNLKL 181
            D   WEV ECLGMWWRPDFETLL+PYL  NVK  KECTKLFLVKLP SRKF+VPKNLKL
Sbjct: 136 GDGIDWEVGECLGMWWRPDFETLLYPYLPPNVKRPKECTKLFLVKLPVSRKFIVPKNLKL 195

Query: 182 IAVPLCQIHENHKTYGPIISGIPQLLSKFSFNIIGT 218
           +AVPLCQIHENHKTYGPIISG+PQLLSKFSFNIIG+
Sbjct: 196 LAVPLCQIHENHKTYGPIISGVPQLLSKFSFNIIGS 225

BLAST of Csa2G000310 vs. NCBI nr
Match: gi|629117355|gb|KCW82030.1| (hypothetical protein EUGRSUZ_C03406 [Eucalyptus grandis])

HSP 1 Score: 327.0 bits (837), Expect = 2.5e-86
Identity = 152/202 (75.25%), Postives = 175/202 (86.63%), Query Frame = 1

Query: 14  DASSAHQLSYIDIYPLSNYYFGSKEPLLFKDETLSDRVLRMKSNYAAHGLRTCVEAVMLV 73
           D     Q   +DIYPLS+YYFGSK+ L  ++ETL+DRV RMKS+YAAHGLRTCVEAV++V
Sbjct: 115 DGGGDDQARAMDIYPLSSYYFGSKDALALREETLADRVQRMKSHYAAHGLRTCVEAVIVV 174

Query: 74  ELFKHPHLLLFQIRNSIFKLPGGRIRPNESDIDGLTRKLTKKLSANGASDASHWEVSECL 133
           ELF+HPHLLL Q+RNS F+LPGGR+RP ESD++GL RKLT KLSANGA D + WE+ ECL
Sbjct: 175 ELFRHPHLLLLQVRNSTFQLPGGRLRPGESDVEGLKRKLTSKLSANGAGDETQWEIGECL 234

Query: 134 GMWWRPDFETLLFPYLSTNVKGAKECTKLFLVKLPESRKFVVPKNLKLIAVPLCQIHENH 193
           GMWWRPDFETLL+PYL  N+K  KECTKLFLVKLP SRKF+VPKNLKL+AVPLCQIHEN 
Sbjct: 235 GMWWRPDFETLLYPYLPPNIKKPKECTKLFLVKLPVSRKFIVPKNLKLLAVPLCQIHENL 294

Query: 194 KTYGPIISGIPQLLSKFSFNII 216
           KTYGPII+G+PQLLSKFSFNII
Sbjct: 295 KTYGPIIAGVPQLLSKFSFNII 316

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
CFIS1_ARATH1.2e-8065.92Pre-mRNA cleavage factor Im 25 kDa subunit 1 OS=Arabidopsis thaliana GN=CFIS1 PE... [more]
CFIS2_ARATH2.9e-5852.58Pre-mRNA cleavage factor Im 25 kDa subunit 2 OS=Arabidopsis thaliana GN=CFIS2 PE... [more]
CPSF5_DANRE3.6e-4545.55Cleavage and polyadenylation specificity factor subunit 5 OS=Danio rerio GN=cpsf... [more]
CPSF5_BOVIN4.7e-4545.55Cleavage and polyadenylation specificity factor subunit 5 OS=Bos taurus GN=NUDT2... [more]
CPSF5_HUMAN4.7e-4545.55Cleavage and polyadenylation specificity factor subunit 5 OS=Homo sapiens GN=NUD... [more]
Match NameE-valueIdentityDescription
A0A0A0LIM0_CUCSA3.3e-122100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_2G000310 PE=4 SV=1[more]
A0A061GLS2_THECC8.3e-8975.12CFIM-25 isoform 1 OS=Theobroma cacao GN=TCM_037594 PE=4 SV=1[more]
A0A059CVR0_EUCGR1.7e-8675.25Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_C03406 PE=4 SV=1[more]
A0A067KCK7_JATCU1.5e-8575.00Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07443 PE=4 SV=1[more]
D7TCL1_VITVI2.5e-8573.79Putative uncharacterized protein OS=Vitis vinifera GN=VIT_11s0016g01760 PE=4 SV=... [more]
Match NameE-valueIdentityDescription
AT4G29820.16.7e-8265.92 homolog of CFIM-25[more]
AT4G25550.11.6e-5952.58 Cleavage/polyadenylation specificity factor, 25kDa subunit[more]
Match NameE-valueIdentityDescription
gi|449446606|ref|XP_004141062.1|4.8e-122100.00PREDICTED: pre-mRNA cleavage factor Im 25 kDa subunit 1 [Cucumis sativus][more]
gi|659071385|ref|XP_008459551.1|5.1e-11694.52PREDICTED: cleavage and polyadenylation specificity factor subunit 5 [Cucumis me... [more]
gi|590575606|ref|XP_007012734.1|1.2e-8875.12CFIM-25 isoform 1 [Theobroma cacao][more]
gi|1009143421|ref|XP_015889257.1|6.5e-8774.54PREDICTED: pre-mRNA cleavage factor Im 25 kDa subunit 1 [Ziziphus jujuba][more]
gi|629117355|gb|KCW82030.1|2.5e-8675.25hypothetical protein EUGRSUZ_C03406 [Eucalyptus grandis][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR015797NUDIX_hydrolase-like_dom_sf
IPR016706Cleav_polyA_spec_factor_su5
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
GO:0003729mRNA binding
Vocabulary: Cellular Component
TermDefinition
GO:0005849mRNA cleavage factor complex
Vocabulary: Biological Process
TermDefinition
GO:0006378mRNA polyadenylation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0010260 animal organ senescence
biological_process GO:0006378 mRNA polyadenylation
biological_process GO:0006457 protein folding
cellular_component GO:0005849 mRNA cleavage factor complex
cellular_component GO:0046658 anchored component of plasma membrane
cellular_component GO:0005618 cell wall
cellular_component GO:0005829 cytosol
molecular_function GO:0016787 hydrolase activity
molecular_function GO:0003729 mRNA binding
molecular_function GO:0005524 ATP binding
molecular_function GO:0051082 unfolded protein binding
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU094979cucumber EST collection version 3.0transcribed_cluster
CU115761cucumber EST collection version 3.0transcribed_cluster
CU157576cucumber EST collection version 3.0transcribed_cluster

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa2G000310.1Csa2G000310.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU157576CU157576transcribed_cluster
CU115761CU115761transcribed_cluster
CU094979CU094979transcribed_cluster


Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR015797NUDIX hydrolase domain-likeunknownSSF55811Nudixcoord: 61..119
score: 8.1
IPR016706Cleavage/polyadenylation specificity factor subunit 5PIRPIRSF017888CPSF-25coord: 4..217
score: 3.0
IPR016706Cleavage/polyadenylation specificity factor subunit 5PANTHERPTHR13047PRE-MRNA CLEAVAGE FACTOR IM, 25KD SUBUNITcoord: 7..215
score: 2.0E
IPR016706Cleavage/polyadenylation specificity factor subunit 5PFAMPF13869NUDIX_2coord: 24..210
score: 1.8
NoneNo IPR availablePANTHERPTHR13047:SF1SUBFAMILY NOT NAMEDcoord: 7..215
score: 2.0E

The following gene(s) are paralogous to this gene:

None