Csa2G000300 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa2G000300
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Ribosomal protein L18ae family protein; contains IPR021138 (Ribosomal protein L18a)
Location	Chr2 : 168438 .. 170552 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATATTCGGGGAACTGTCCCTTCATTTGTGGATGATGACAAGACGGCGATTGTATCCACGATCTAGCTTTCTTTTGGTTACTACTGGGTTTGGAGTTTCGGATTTTTGGCAGCTGAAGAAGTCACTAATTCTATTCTTTTCCCTTTCTGCTGAGAATTATCCACTTATCTTTTATTCTTGACTTTGGCGTGGGAATATGGCTACGATTCATGAAGTCTAGTTTTGGTCAAGCTAGGTTACCTATTCATCTGACGGCTTTTGGAAGATTGAAAAGTTCCATAAGGTCGTTGTGCTCAACTGAACTAGTGTTTTATTAAATGAGGTTTAATGAACTAATTGGTATACGAATATTGGATTGTTTAGAGGTATTTGGAATGTAAATACCAAACTTAGGTAAATTTTCAATCCAGTTTCAATCTTCTGTTTGCCGCATTTGAAGAATATATAGCTATCTTGTTGGGTGTCTTTCCTTCAGACTTCTGAGTAGATTTTGATCTTTGACACAGGTTTACAAAGTGGATACTGCGAATTCTAAGAGTTCATTCTTCCATAAACACCGGCTTCAGCATGGATCCAAGTAACTTAATTCTTCTTATAACTTGGGTTGCTCATGATATCACTTACGGTTGGGGGCATAACCTAAAATTTAAAAAGAAGAAAAGCATGACTATGTATATTGGGTGCATTAGATGATTTTATTTGTGAGTTTGTAGCATGGTTCTTACTTAAGTAATTTATTTGATCTTGAGATTCTTTAGGTGTCTTGGACATCCATACATGCCTATACTCATTTTTTATGCTTTCACTGCATGGTTATACTTTTTATTGAAGAATCTGGGCACATTCAGAGTTTTAAGCTTGTTGATTTAGTGTCCGTCCTTTTATGATACACGTTTGCGGTCTTTGTCAAACCAATAATACACATTGAACTGTAAATAGTTTTTACGAAATAGTTGGAACGATTACTTGAGTTGTGAACATGTTTTGGCGATGTTACAGATGGAAAAATGGACCAGACGGTGCAACTGGTGAAATCGGTCTCTGATAAGCATCTTGATCTTTTGAGGCCATCTGCCCGAATTTGTTCAATATTCAAAGGTAAGTCGGGAATAAAAAGAGACATTTATGATATATGATGCATATATTATTACCTTGTATTGGTGGCTCTTTAATGAAATTATTTTTCGTAAAAAAAAAAAAAAGGAATGAAATTAGTTGAACCATTTTTAAAATGCCTTTATATTATAAAGGACGCATTGCCACGCCACATTCCTGTGGAATTTCTGAAATCGATAGGGGTTTCGTTTTTTATTGCTCCATTATGAGGGAAGGTTGAGATGATATTTAATAGCGTCATTTTCTTTGCTACTCGACGGTGTATGGTCTTGATGGTAGGGGTTTATCACTCCGGTAGTCCATTTTCTTTGTACTTACCTATGAATTACAGAAATCTCTTAAGATTTTTTCAATTGGAGATGTTGATTACGAGTGTCTTTTGCTTGTATATTCATCTATGCTCAAAATGGTTGATAATACACCTAGGCCAAGGAAAAGATGCTCCAGACCACATAAGGAGCAAATACACACTTCTCAGAGATGTAGAGGATGCTCAAGTAGGGCTATATGACAAGCCTCTCCCGTGTTTTGGCTGCGGAATAGGATGGTTTTCGTGAGTATTATGAAACTCTCTCGTCTACTTACATTTCATGGAACGTCTATCTTTGCCTACGTCCAGTTTTTCGAGTTTCCTAATTTTACCTTTGTATCTGTCTTTCCATTCAGTTTCCTCCTGGGGTTTTTTTTCCCATTGCTGTGGTACTATGCCACGATTCTCTACTTCTGGAATGCTCGCAGAGATCCAAGGGAACGAGCTGGATTAGCTGCGTCTGCCATTGCTGTAAGTGACTCCTCCGTTTCTCCCAGTCCCTACCCATAATAAAGAAAGGAAAGAAGAAGAAACAAACATAACTGACATCAATTCTTACATCTTCGCCATTTATTATGAGTTCGTCGAATATGATTGAGTTTTCTGAAGAAGCAAAAAATGTTGAAATGTTGCAGGCACTTGCATGTTCAATCCTCTTGTTAATCGTGGTAGCTGTTCTTCTATGA

mRNA sequence

ATGGATATTCGGGGAACTGTCCCTTCATTTGTGGATGATGACAAGACGGCGATTTCTAGTTTTGGTCAAGCTAGGTTACCTATTCATCTGACGGCTTTTGGAAGATTGAAAAGTTCCATAAGGTTTACAAAGTGGATACTGCGAATTCTAAGAGTTCATTCTTCCATAAACACCGGCTTCAGCATGGATCCAAATGGAAAAATGGACCAGACGGTGCAACTGGTGAAATCGGTCTCTGATAAGCATCTTGATCTTTTGAGGCCATCTGCCCGAATTTGTTCAATATTCAAAGGCCAAGGAAAAGATGCTCCAGACCACATAAGGAGCAAATACACACTTCTCAGAGATGTAGAGGATGCTCAAGTAGGGCTATATGACAAGCCTCTCCCGTGTTTTGGCTGCGGAATAGGATGGTTTTCTTTCCTCCTGGGGTTTTTTTTCCCATTGCTGTGGTACTATGCCACGATTCTCTACTTCTGGAATGCTCGCAGAGATCCAAGGGAACGAGCTGGATTAGCTGCGTCTGCCATTGCTGCACTTGCATGTTCAATCCTCTTGTTAATCGTGGTAGCTGTTCTTCTATGA

Coding sequence (CDS)

ATGGATATTCGGGGAACTGTCCCTTCATTTGTGGATGATGACAAGACGGCGATTTCTAGTTTTGGTCAAGCTAGGTTACCTATTCATCTGACGGCTTTTGGAAGATTGAAAAGTTCCATAAGGTTTACAAAGTGGATACTGCGAATTCTAAGAGTTCATTCTTCCATAAACACCGGCTTCAGCATGGATCCAAATGGAAAAATGGACCAGACGGTGCAACTGGTGAAATCGGTCTCTGATAAGCATCTTGATCTTTTGAGGCCATCTGCCCGAATTTGTTCAATATTCAAAGGCCAAGGAAAAGATGCTCCAGACCACATAAGGAGCAAATACACACTTCTCAGAGATGTAGAGGATGCTCAAGTAGGGCTATATGACAAGCCTCTCCCGTGTTTTGGCTGCGGAATAGGATGGTTTTCTTTCCTCCTGGGGTTTTTTTTCCCATTGCTGTGGTACTATGCCACGATTCTCTACTTCTGGAATGCTCGCAGAGATCCAAGGGAACGAGCTGGATTAGCTGCGTCTGCCATTGCTGCACTTGCATGTTCAATCCTCTTGTTAATCGTGGTAGCTGTTCTTCTATGA

Protein sequence

MDIRGTVPSFVDDDKTAISSFGQARLPIHLTAFGRLKSSIRFTKWILRILRVHSSINTGFSMDPNGKMDQTVQLVKSVSDKHLDLLRPSARICSIFKGQGKDAPDHIRSKYTLLRDVEDAQVGLYDKPLPCFGCGIGWFSFLLGFFFPLLWYYATILYFWNARRDPRERAGLAASAIAALACSILLLIVVAVLL*

Homology

[Close]

BLAST of Csa2G000300 vs. TrEMBL
Match: A0A0A0LKM2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G000300 PE=4 SV=1)

HSP 1 Score: 393.7 bits (1010), Expect = 1.3e-106
Identity = 194/194 (100.00%), Postives = 194/194 (100.00%), Query Frame = 1


Query: 1   MDIRGTVPSFVDDDKTAISSFGQARLPIHLTAFGRLKSSIRFTKWILRILRVHSSINTGF 60
           MDIRGTVPSFVDDDKTAISSFGQARLPIHLTAFGRLKSSIRFTKWILRILRVHSSINTGF
Sbjct: 1   MDIRGTVPSFVDDDKTAISSFGQARLPIHLTAFGRLKSSIRFTKWILRILRVHSSINTGF 60

Query: 61  SMDPNGKMDQTVQLVKSVSDKHLDLLRPSARICSIFKGQGKDAPDHIRSKYTLLRDVEDA 120
           SMDPNGKMDQTVQLVKSVSDKHLDLLRPSARICSIFKGQGKDAPDHIRSKYTLLRDVEDA
Sbjct: 61  SMDPNGKMDQTVQLVKSVSDKHLDLLRPSARICSIFKGQGKDAPDHIRSKYTLLRDVEDA 120

Query: 121 QVGLYDKPLPCFGCGIGWFSFLLGFFFPLLWYYATILYFWNARRDPRERAGLAASAIAAL 180
           QVGLYDKPLPCFGCGIGWFSFLLGFFFPLLWYYATILYFWNARRDPRERAGLAASAIAAL
Sbjct: 121 QVGLYDKPLPCFGCGIGWFSFLLGFFFPLLWYYATILYFWNARRDPRERAGLAASAIAAL 180

Query: 181 ACSILLLIVVAVLL 195
           ACSILLLIVVAVLL
Sbjct: 181 ACSILLLIVVAVLL 194

[Close]

BLAST of Csa2G000300 vs. TrEMBL
Match: A0A022QK81_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a015944mg PE=4 SV=1)

HSP 1 Score: 193.7 bits (491), Expect = 2.0e-46
Identity = 92/130 (70.77%), Postives = 111/130 (85.38%), Query Frame = 1


Query: 66  GKMDQTVQLVKSVSDKHLDLLRPSARICSIFKGQGKDAPDHIRSKYTLLRDVEDAQVGLY 125
           G+    ++LV+SVSDKHLDLLRPS+R  S+FKGQ  D+ D  + KYTL+R+ +D+Q+G+Y
Sbjct: 10  GEGRNALELVRSVSDKHLDLLRPSSRYYSMFKGQATDSGDREKGKYTLIRNEDDSQLGIY 69

Query: 126 DKPLPCFGCGIGWFSFLLGFFFPLLWYYATILYFWN-ARRDPRERAGLAASAIAALACSI 185
           DKPLPCFGCGIGWFSFLLGF FPL+WYYAT LYF N  R+DPRERAGLAASAIAA+ACS+
Sbjct: 70  DKPLPCFGCGIGWFSFLLGFLFPLMWYYATFLYFGNYYRKDPRERAGLAASAIAAMACSV 129

Query: 186 LLLIVVAVLL 195
           LLLIVV +LL
Sbjct: 130 LLLIVVLILL 139

[Close]

BLAST of Csa2G000300 vs. TrEMBL
Match: D7TCL0_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_11s0016g01750 PE=4 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 5.9e-46
Identity = 93/125 (74.40%), Postives = 107/125 (85.60%), Query Frame = 1


Query: 71  TVQLVKSVSDKHLDLLRPSARICSIFKGQGKDAPDHIRSKYTLLRDVEDAQVGLYDKPLP 130
           +++L KS+SDKHLDLLRPS+R  SIFKGQ  DA D  + KYTLLRDVED QVG++DKPLP
Sbjct: 15  SLELTKSISDKHLDLLRPSSRYYSIFKGQAVDAVDREKGKYTLLRDVEDFQVGIFDKPLP 74

Query: 131 CFGCGIGWFSFLLGFFFPLLWYYATILYFWNA-RRDPRERAGLAASAIAALACSILLLIV 190
           CFGCGIGWFSFLLGF  PL+WYYATILYF N  R+DPRERAGLAASAIAA+ACS +LLI+
Sbjct: 75  CFGCGIGWFSFLLGFLCPLMWYYATILYFGNCYRKDPRERAGLAASAIAAMACSAVLLII 134

Query: 191 VAVLL 195
           +A  L
Sbjct: 135 LAFRL 139

[Close]

BLAST of Csa2G000300 vs. TrEMBL
Match: M1B3V8_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400014102 PE=4 SV=1)

HSP 1 Score: 191.0 bits (484), Expect = 1.3e-45
Identity = 92/129 (71.32%), Postives = 105/129 (81.40%), Query Frame = 1


Query: 66  GKMDQTVQLVKSVSDKHLDLLRPSARICSIFKGQGKDAPDHIRSKYTLLRDVEDAQVGLY 125
           G+   TV+LVKS S+KHLDLLRPSAR  S+ KGQ  DA D  + KYTL+RDVED Q G Y
Sbjct: 10  GEGRNTVELVKSASEKHLDLLRPSARYYSVSKGQAGDAEDREKGKYTLIRDVEDIQTGFY 69

Query: 126 DKPLPCFGCGIGWFSFLLGFFFPLLWYYATILYFWN-ARRDPRERAGLAASAIAALACSI 185
           DKPLPCFGCG+GWFSFLLGF  PL+WYYATILYF N  R+DPRERAGLAASAIAA+ CS+
Sbjct: 70  DKPLPCFGCGVGWFSFLLGFLCPLMWYYATILYFGNYYRKDPRERAGLAASAIAAMVCSV 129

Query: 186 LLLIVVAVL 194
           +LLI+ A L
Sbjct: 130 VLLIIAATL 138

[Close]

BLAST of Csa2G000300 vs. TrEMBL
Match: A0A0V0HKW9_SOLCH (Putative 60S ribosomal protein L18a-1-like OS=Solanum chacoense PE=4 SV=1)

HSP 1 Score: 191.0 bits (484), Expect = 1.3e-45
Identity = 92/129 (71.32%), Postives = 105/129 (81.40%), Query Frame = 1


Query: 66  GKMDQTVQLVKSVSDKHLDLLRPSARICSIFKGQGKDAPDHIRSKYTLLRDVEDAQVGLY 125
           G+   TV+LVKS S+KHLDLLRPSAR  S+ KGQ  DA D  + KYTL+RDVED Q G Y
Sbjct: 10  GEGRNTVELVKSASEKHLDLLRPSARYYSVSKGQAGDAEDREKGKYTLIRDVEDLQTGFY 69

Query: 126 DKPLPCFGCGIGWFSFLLGFFFPLLWYYATILYFWN-ARRDPRERAGLAASAIAALACSI 185
           DKPLPCFGCG+GWFSFLLGF  PL+WYYATILYF N  R+DPRERAGLAASAIAA+ CS+
Sbjct: 70  DKPLPCFGCGVGWFSFLLGFLCPLMWYYATILYFGNYYRKDPRERAGLAASAIAAMVCSV 129

Query: 186 LLLIVVAVL 194
           +LLI+ A L
Sbjct: 130 VLLIIAATL 138

[Close]

BLAST of Csa2G000300 vs. TAIR10
Match: AT4G26060.1 (AT4G26060.1 Ribosomal protein L18ae family)

HSP 1 Score: 153.3 bits (386), Expect = 1.5e-37
Identity = 76/123 (61.79%), Postives = 93/123 (75.61%), Query Frame = 1


Query: 69  DQTVQLVKSVSDKHLDLLRPSARICSIFKGQGKDAPDHIRSKYTLLRDVEDAQVGLYDKP 128
           D + +LVKSV+DKH  L+RP A+  S  K    DA    + +YTL++DV++ + G+YDKP
Sbjct: 10  DGSAELVKSVADKHAGLVRPVAKYYSAVK----DAMVCGKGRYTLVKDVDEVENGVYDKP 69

Query: 129 LPCFGCGIGWFSFLLGFFFPLLWYYATILYFWN-ARRDPRERAGLAASAIAALACSILLL 188
           LPCFGCGIGWFSFLLGF FP LWYYAT+LYF N  R+DPRERAGLAASAI A+  S+LLL
Sbjct: 70  LPCFGCGIGWFSFLLGFVFPFLWYYATLLYFGNYYRKDPRERAGLAASAITAMGFSLLLL 128

Query: 189 IVV 191
           ++V
Sbjct: 130 VIV 128

[Close]

BLAST of Csa2G000300 vs. TAIR10
Match: AT5G57060.1 (AT5G57060.1 FUNCTIONS IN: molecular_function unknown)

HSP 1 Score: 145.6 bits (366), Expect = 3.2e-35
Identity = 73/134 (54.48%), Postives = 92/134 (68.66%), Query Frame = 1


Query: 62  MDPNGKM---DQTVQLVKSVSDKHLDLLRPSARICSIFKGQGKDAPDHIRSKYTLLRDVE 121
           MD N K    +   +LVK ++D+H  L++ ++R  S  K    DA    + +YTL++DV+
Sbjct: 1   MDENSKFVSGNGRTELVKFIADRHAKLMKQASRHYSAIK----DAMARGKKRYTLVKDVD 60

Query: 122 DAQVGLYDKPLPCFGCGIGWFSFLLGFFFPLLWYYATILYFWN-ARRDPRERAGLAASAI 181
           D + G YDKPLPCFGCGIGWFSFLLGF FP LWYYA  LYF N  R+DPRERAGLAASAI
Sbjct: 61  DMETGAYDKPLPCFGCGIGWFSFLLGFMFPFLWYYAAFLYFGNYYRKDPRERAGLAASAI 120

Query: 182 AALACSILLLIVVA 192
            A+  S++LL++ A
Sbjct: 121 TAMGFSLVLLVIFA 130

[Close]

BLAST of Csa2G000300 vs. TAIR10
Match: AT1G54217.2 (AT1G54217.2 Ribosomal protein L18ae family)

HSP 1 Score: 111.7 bits (278), Expect = 5.2e-25
Identity = 57/95 (60.00%), Postives = 67/95 (70.53%), Query Frame = 1


Query: 102 DAPDHIRSKYTLLRD-VEDAQVGLYDKPLPCFGCGIGWFSFLLGFFFPLLWYYATILYFW 161
           D  +  + KY L+RD  ED+++G + KPLPCFG GIGWFSFLLGF FP  WY AT LY  
Sbjct: 5   DLEEQKKGKYVLIRDDAEDSELGQFYKPLPCFGFGIGWFSFLLGFVFPFAWYVATFLYLI 64

Query: 162 N-ARRDPRERAGLAASAIAALACSILLLIVVAVLL 195
           +   RDPRER+GLAASAIAAL  S+ L+I V VL+
Sbjct: 65  SYYHRDPRERSGLAASAIAALIFSVALVITVLVLV 99

[Close]

BLAST of Csa2G000300 vs. TAIR10
Match: AT3G14595.1 (AT3G14595.1 Ribosomal protein L18ae family)

HSP 1 Score: 55.8 bits (133), Expect = 3.4e-08
Identity = 26/57 (45.61%), Postives = 34/57 (59.65%), Query Frame = 1


Query: 131 CFGCGIGWFSFLLGFFFPLLWYYATILYFWNARRDPRERAGLAASAIAALACSILLL 188
           C G GIGW  F+LGFFF L WY    L  ++  R+PRER G  A A+ A+  +I+++
Sbjct: 67  CCGIGIGWVLFILGFFFALPWYIGFFLLLFS--RNPRERPGYIACAVGAVFATIIVI 121

[Close]

BLAST of Csa2G000300 vs. TAIR10
Match: AT1G53560.1 (AT1G53560.1 Ribosomal protein L18ae family)

HSP 1 Score: 55.1 bits (131), Expect = 5.7e-08
Identity = 25/62 (40.32%), Postives = 34/62 (54.84%), Query Frame = 1


Query: 129 LPCFGCGIGWFSFLLGFFFPLLWYYATILYFWNARRDPRERAGLAASAIAALACSILLLI 188
           LPC G G+GWF F++GF    + +Y  +     AR DPRE+ G  A  IAA+  +I ++ 
Sbjct: 84  LPCCGLGLGWFLFIIGFLLGAIPWYVGVFILVCARIDPREKPGYVACTIAAVVATITIVF 143

Query: 189 VV 191
            V
Sbjct: 144 GV 145

[Close]

BLAST of Csa2G000300 vs. NCBI nr
Match: gi|700205402|gb|KGN60521.1| (hypothetical protein Csa_2G000300 [Cucumis sativus])

HSP 1 Score: 393.7 bits (1010), Expect = 1.9e-106
Identity = 194/194 (100.00%), Postives = 194/194 (100.00%), Query Frame = 1


Query: 1   MDIRGTVPSFVDDDKTAISSFGQARLPIHLTAFGRLKSSIRFTKWILRILRVHSSINTGF 60
           MDIRGTVPSFVDDDKTAISSFGQARLPIHLTAFGRLKSSIRFTKWILRILRVHSSINTGF
Sbjct: 1   MDIRGTVPSFVDDDKTAISSFGQARLPIHLTAFGRLKSSIRFTKWILRILRVHSSINTGF 60

Query: 61  SMDPNGKMDQTVQLVKSVSDKHLDLLRPSARICSIFKGQGKDAPDHIRSKYTLLRDVEDA 120
           SMDPNGKMDQTVQLVKSVSDKHLDLLRPSARICSIFKGQGKDAPDHIRSKYTLLRDVEDA
Sbjct: 61  SMDPNGKMDQTVQLVKSVSDKHLDLLRPSARICSIFKGQGKDAPDHIRSKYTLLRDVEDA 120

Query: 121 QVGLYDKPLPCFGCGIGWFSFLLGFFFPLLWYYATILYFWNARRDPRERAGLAASAIAAL 180
           QVGLYDKPLPCFGCGIGWFSFLLGFFFPLLWYYATILYFWNARRDPRERAGLAASAIAAL
Sbjct: 121 QVGLYDKPLPCFGCGIGWFSFLLGFFFPLLWYYATILYFWNARRDPRERAGLAASAIAAL 180

Query: 181 ACSILLLIVVAVLL 195
           ACSILLLIVVAVLL
Sbjct: 181 ACSILLLIVVAVLL 194

[Close]

BLAST of Csa2G000300 vs. NCBI nr
Match: gi|778665578|ref|XP_011648592.1| (PREDICTED: uncharacterized protein LOC101207093 isoform X1 [Cucumis sativus])

HSP 1 Score: 358.2 bits (918), Expect = 9.0e-96
Identity = 176/176 (100.00%), Postives = 176/176 (100.00%), Query Frame = 1


Query: 19  SSFGQARLPIHLTAFGRLKSSIRFTKWILRILRVHSSINTGFSMDPNGKMDQTVQLVKSV 78
           SSFGQARLPIHLTAFGRLKSSIRFTKWILRILRVHSSINTGFSMDPNGKMDQTVQLVKSV
Sbjct: 3   SSFGQARLPIHLTAFGRLKSSIRFTKWILRILRVHSSINTGFSMDPNGKMDQTVQLVKSV 62

Query: 79  SDKHLDLLRPSARICSIFKGQGKDAPDHIRSKYTLLRDVEDAQVGLYDKPLPCFGCGIGW 138
           SDKHLDLLRPSARICSIFKGQGKDAPDHIRSKYTLLRDVEDAQVGLYDKPLPCFGCGIGW
Sbjct: 63  SDKHLDLLRPSARICSIFKGQGKDAPDHIRSKYTLLRDVEDAQVGLYDKPLPCFGCGIGW 122

Query: 139 FSFLLGFFFPLLWYYATILYFWNARRDPRERAGLAASAIAALACSILLLIVVAVLL 195
           FSFLLGFFFPLLWYYATILYFWNARRDPRERAGLAASAIAALACSILLLIVVAVLL
Sbjct: 123 FSFLLGFFFPLLWYYATILYFWNARRDPRERAGLAASAIAALACSILLLIVVAVLL 178

[Close]

BLAST of Csa2G000300 vs. NCBI nr
Match: gi|449446608|ref|XP_004141063.1| (PREDICTED: uncharacterized protein LOC101207093 isoform X2 [Cucumis sativus])

HSP 1 Score: 274.6 bits (701), Expect = 1.3e-70
Identity = 133/133 (100.00%), Postives = 133/133 (100.00%), Query Frame = 1


Query: 62  MDPNGKMDQTVQLVKSVSDKHLDLLRPSARICSIFKGQGKDAPDHIRSKYTLLRDVEDAQ 121
           MDPNGKMDQTVQLVKSVSDKHLDLLRPSARICSIFKGQGKDAPDHIRSKYTLLRDVEDAQ
Sbjct: 1   MDPNGKMDQTVQLVKSVSDKHLDLLRPSARICSIFKGQGKDAPDHIRSKYTLLRDVEDAQ 60

Query: 122 VGLYDKPLPCFGCGIGWFSFLLGFFFPLLWYYATILYFWNARRDPRERAGLAASAIAALA 181
           VGLYDKPLPCFGCGIGWFSFLLGFFFPLLWYYATILYFWNARRDPRERAGLAASAIAALA
Sbjct: 61  VGLYDKPLPCFGCGIGWFSFLLGFFFPLLWYYATILYFWNARRDPRERAGLAASAIAALA 120

Query: 182 CSILLLIVVAVLL 195
           CSILLLIVVAVLL
Sbjct: 121 CSILLLIVVAVLL 133

[Close]

BLAST of Csa2G000300 vs. NCBI nr
Match: gi|659071387|ref|XP_008459564.1| (PREDICTED: uncharacterized protein LOC103498658 [Cucumis melo])

HSP 1 Score: 271.9 bits (694), Expect = 8.5e-70
Identity = 130/133 (97.74%), Postives = 133/133 (100.00%), Query Frame = 1


Query: 62  MDPNGKMDQTVQLVKSVSDKHLDLLRPSARICSIFKGQGKDAPDHIRSKYTLLRDVEDAQ 121
           MDPNGKMDQTVQLVKSVSDKHLDLLRPSARICSIFKGQGKDAPDHIRSKYTLLRDVED+Q
Sbjct: 1   MDPNGKMDQTVQLVKSVSDKHLDLLRPSARICSIFKGQGKDAPDHIRSKYTLLRDVEDSQ 60

Query: 122 VGLYDKPLPCFGCGIGWFSFLLGFFFPLLWYYATILYFWNARRDPRERAGLAASAIAALA 181
           VGLYDKPLPCFGCGIGWFSFLLGFFFPL+WYYATILYFWNARRDPRERAGLAASAIAALA
Sbjct: 61  VGLYDKPLPCFGCGIGWFSFLLGFFFPLMWYYATILYFWNARRDPRERAGLAASAIAALA 120

Query: 182 CSILLLIVVAVLL 195
           CSI+LLIVVAVLL
Sbjct: 121 CSIILLIVVAVLL 133

[Close]

BLAST of Csa2G000300 vs. NCBI nr
Match: gi|848896372|ref|XP_012848244.1| (PREDICTED: uncharacterized protein LOC105968167 isoform X1 [Erythranthe guttata])

HSP 1 Score: 193.7 bits (491), Expect = 2.9e-46
Identity = 92/130 (70.77%), Postives = 111/130 (85.38%), Query Frame = 1


Query: 66  GKMDQTVQLVKSVSDKHLDLLRPSARICSIFKGQGKDAPDHIRSKYTLLRDVEDAQVGLY 125
           G+    ++LV+SVSDKHLDLLRPS+R  S+FKGQ  D+ D  + KYTL+R+ +D+Q+G+Y
Sbjct: 10  GEGRNALELVRSVSDKHLDLLRPSSRYYSMFKGQATDSGDREKGKYTLIRNEDDSQLGIY 69

Query: 126 DKPLPCFGCGIGWFSFLLGFFFPLLWYYATILYFWN-ARRDPRERAGLAASAIAALACSI 185
           DKPLPCFGCGIGWFSFLLGF FPL+WYYAT LYF N  R+DPRERAGLAASAIAA+ACS+
Sbjct: 70  DKPLPCFGCGIGWFSFLLGFLFPLMWYYATFLYFGNYYRKDPRERAGLAASAIAAMACSV 129

Query: 186 LLLIVVAVLL 195
           LLLIVV +LL
Sbjct: 130 LLLIVVLILL 139

The following BLAST results are available for this feature:

BLAST of Csa2G000300 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LKM2_CUCSA	1.3e-106	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G000300 PE=4 SV=1	[more]
A0A022QK81_ERYGU	2.0e-46	70.77	Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a015944mg PE=4 SV=1	[more]
D7TCL0_VITVI	5.9e-46	74.40	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_11s0016g01750 PE=4 SV=...	[more]
M1B3V8_SOLTU	1.3e-45	71.32	Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400014102 PE=4 SV=1	[more]
A0A0V0HKW9_SOLCH	1.3e-45	71.32	Putative 60S ribosomal protein L18a-1-like OS=Solanum chacoense PE=4 SV=1	[more]

BLAST of Csa2G000300 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G26060.1	1.5e-37	61.79	Ribosomal protein L18ae family	[more]
AT5G57060.1	3.2e-35	54.48	FUNCTIONS IN: molecular_function unknown	[more]
AT1G54217.2	5.2e-25	60.00	Ribosomal protein L18ae family	[more]
AT3G14595.1	3.4e-08	45.61	Ribosomal protein L18ae family	[more]
AT1G53560.1	5.7e-08	40.32	Ribosomal protein L18ae family	[more]

BLAST of Csa2G000300 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700205402\|gb\|KGN60521.1\|	1.9e-106	100.00	hypothetical protein Csa_2G000300 [Cucumis sativus]	[more]
gi\|778665578\|ref\|XP_011648592.1\|	9.0e-96	100.00	PREDICTED: uncharacterized protein LOC101207093 isoform X1 [Cucumis sativus]	[more]
gi\|449446608\|ref\|XP_004141063.1\|	1.3e-70	100.00	PREDICTED: uncharacterized protein LOC101207093 isoform X2 [Cucumis sativus]	[more]
gi\|659071387\|ref\|XP_008459564.1\|	8.5e-70	97.74	PREDICTED: uncharacterized protein LOC103498658 [Cucumis melo]	[more]
gi\|848896372\|ref\|XP_012848244.1\|	2.9e-46	70.77	PREDICTED: uncharacterized protein LOC105968167 isoform X1 [Erythranthe guttata]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005840	ribosome
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
CU086137	cucumber EST collection version 3.0	transcribed_cluster
CU086246	cucumber EST collection version 3.0	transcribed_cluster
CU123217	cucumber EST collection version 3.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa2G000300.1	Csa2G000300.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
CU086246	CU086246	transcribed_cluster
CU123217	CU123217	transcribed_cluster
CU086137	CU086137	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR10052	60S RIBOSOMAL PROTEIN L18A	coord: 56..194 score: 2.8
None	No IPR available	PANTHER	PTHR10052:SF11	SUBFAMILY NOT NAMED	coord: 56..194 score: 2.8

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa2G000300	Cla016845	Watermelon (97103) v1	cuwmB162
Csa2G000300	MELO3C004638	Melon (DHL92) v3.5.1	cumeB140
Csa2G000300	ClCG11G001620	Watermelon (Charleston Gray)	cuwcgB096
Csa2G000300	Lsi11G001740	Bottle gourd (USVL1VR-Ls)	culsiB098
Csa2G000300	MELO3C004638.2	Melon (DHL92) v3.6.1	cumedB133
Csa2G000300	Cla97C11G207990	Watermelon (97103) v2	cuwmbB103
Csa2G000300	Bhi06G001400	Wax gourd	cuwgoB129
Csa2G000300	CSPI02G00300	Wild cucumber (PI 183967)	cpicuB065
Csa2G000300	Cucsa.117180	Cucumber (Gy14) v1	cgycuB150
Csa2G000300	CmaCh05G014050	Cucurbita maxima (Rimu)	cmacuB791
Csa2G000300	CmaCh12G013200	Cucurbita maxima (Rimu)	cmacuB170
Csa2G000300	CmoCh12G013510	Cucurbita moschata (Rifu)	cmocuB154
Csa2G000300	CmoCh05G014050	Cucurbita moschata (Rifu)	cmocuB783
Csa2G000300	Cp4.1LG07g10820	Cucurbita pepo (Zucchini)	cpecuB816
Csa2G000300	Cp4.1LG11g11770	Cucurbita pepo (Zucchini)	cpecuB103
Csa2G000300	CsGy2G000290	Cucumber (Gy14) v2	cgybcuB056
Csa2G000300	Carg10796	Silver-seed gourd	carcuB0598
Csa2G000300	Carg18643	Silver-seed gourd	carcuB0910

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa2G000300	Watermelon (97103) v2	cuwmbB130
Csa2G000300	Watermelon (97103) v2	cuwmbB156
Csa2G000300	Wax gourd	cuwgoB211
Csa2G000300	Cucumber (Chinese Long) v2	cucuB010
Csa2G000300	Cucurbita maxima (Rimu)	cmacuB075
Csa2G000300	Cucurbita maxima (Rimu)	cmacuB119
Csa2G000300	Cucurbita moschata (Rifu)	cmocuB065
Csa2G000300	Cucurbita moschata (Rifu)	cmocuB105
Csa2G000300	Melon (DHL92) v3.5.1	cumeB110
Csa2G000300	Watermelon (Charleston Gray)	cuwcgB134
Csa2G000300	Watermelon (Charleston Gray)	cuwcgB163
Csa2G000300	Watermelon (97103) v1	cuwmB114
Csa2G000300	Watermelon (97103) v1	cuwmB119
Csa2G000300	Cucurbita pepo (Zucchini)	cpecuB130
Csa2G000300	Cucurbita pepo (Zucchini)	cpecuB370
Csa2G000300	Cucurbita pepo (Zucchini)	cpecuB543
Csa2G000300	Cucurbita pepo (Zucchini)	cpecuB662
Csa2G000300	Bottle gourd (USVL1VR-Ls)	culsiB134
Csa2G000300	Cucumber (Gy14) v2	cgybcuB019
Csa2G000300	Melon (DHL92) v3.6.1	cumedB110
Csa2G000300	Silver-seed gourd	carcuB0102
Csa2G000300	Silver-seed gourd	carcuB0217
Csa2G000300	Silver-seed gourd	carcuB0902