Csa1G714710 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa1G714710
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Vacuolar sorting protein 39; contains IPR019453 (Vacuolar sorting protein 39/Transforming growth factor beta receptor-associated domain 2)
Location	Chr1 : 29064607 .. 29067686 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAGACTTTGTCCCCAAATATGCCGCTTCATATTGCGTCGGAAACAATATTGAAACTGTTGAGAGCTCGATTTCATCATAAATGTCAAGGACAGGTTCTCTCACTCTCTTTCTTCTCCTTTCTCTCACCTACTTAATCTTCTACCACCCTCTTTCTTAAAATCTGATCTCTTTTAATGAACCTTCCCCTTGTTTCGAACTGCAAGTATTCTGATAGACCCCCTATCATACACCAATATAGTAGGAGAAGGAAAAAGAATTGACACGTGTGAATGAGGGAGAGGGTTTACGTGAGAGTAAAGTAGTTAGGAAGTATTAATAGTGGAAAGGAGAGGGCAGGAAAGTTAGTTAAGCTTTTGGTTAGAGAAGAGTGTAAGACCCCCAATTATCCATACTTATAGGAGGAAGGGTAGAAAAGTAACTGCACAGGGAATTATTATGGAGAAATGATTGGAAGGACGTTCTGAGTGGTAGGGCCACTGGGCTGAGGAATATGTGAGTCTATAAATAGGATTATTAGGTTGGAGTAGCTAGGGTATTTTTAACTTTTAGGAGGTAGGGCTACAGCAGCCACCAGGGTCTCTTAAAACCAAGAGGCTGGTATGATCTTTTCTGCATTTTTCCTTGTTGTTTCTTGTTATTTCTTTTCATCTTGTGAATCTGGATCATTTGGCTTTATATATAAATAAAGTAAACCAGAGTACCGCCTCTGTTTAAGCCATTTATACAGTCCTTTCGGTCTAAATTATTGTTAGTATCCTAACAAAGAGTTTCTGTTCTACCTTGAGAGATGGGTTAGCAGAAGGGAGTTCTTACATCTTTGAGATCGGATTAGAGATTGTAACCTAGATTCGTCATTGAATCTAATATCAATAATACTTACTATTCAATAACGTTCCTGGTTTCCATCATAGTCATTTTCTGCATTAATAACTGGTTCTTTTTTCGTCTATGACAAATTACTTTTTGAAAATCATGGTGCCAATTGCTTTGGCTACTTTTATTTTGTCTCAAGGACAAAGAAAACAAGAATATTTGTCCTGGTGATAGTTTCTACAACTAATGCATCGGTTAAATAGATTTTGAGAATTTTGTGAACTACTGAGAAATATTACTGGTGAAATTATTGTTTTTAGTGGTGTCATCTGGGTCTTAGCGCCATTAAGGCACTGAAGAGGAGGCTGAAGCAGCAGTTGTCCACTCTTCTCTTCCTGCTATGAACCATCCTCAAACCCCAATTACTTCTTCCTCATGTTCTGAATTATACAGGCAGATGTTATAATACCTAGGCACCCAGAAACCTATAATTGTGAACCGAAATCAAATCTATCGAATAATTGGTTTGATGTAGTCCCCACTGAAGCCATGAAGGACTATCTAAATTAATCCTTCCAAAAACTGAAGAATGAAGATATAGATTAAGAAATTTTGTCTTCTTCATTCTTTTCAAAATCAGGGGGTGGTATCTGTTAATTGATTAAACTGAGGGGGTCAACTGCAGAAGGTTTAATTACTTCTCACACTTTACAGATTGTACATAATACCTCCCGTGCTCTAGACCTTGAGGCGAGGTTGGCCAGATTGGAGGAAAGATCAAGACATGCTCAGATCAATGATGAGAGCCTCTGTGATTCTTGTCACGCACGCCTTGGAACTAAATTGTTTGCAATGTACCCTGATGATACAGTTGTCTGTTACAAGGTTGGTAACATGCCTCTTCTGCACCCATTAGAACTTAAAAGTTTATATCTACATTCCCGTAAATATAAAATTACACCGAGTCTATTTCATGTTTTAGTCACCAAGTAAAAGATTGTTATGTTTAGCATAGTCCTCTATCAAGTTTCGGATGCAGTAGTTAATGGGTTGAACCGTTTTGCGTTGCATGAAATTCATCAATTGGGTCCATTCTAAATGACTTCGTTTCATGCTTCCCCTGATGGTTTGGGGATGGGAGAGGATTAATGAGCATATTTTTCTAACTAATTGAATTATTAAGGCTCTATTTTCACAACTTTTTTAATAGTAGTTTTCATCTTTACTAATGAAAGCTTTTTATTAGTCAATTTTCAAAAAATAAAAACAAGTTCTTAAGGCTCAATTTATGATGACTTAGTTTCACTGTTTTGTTTACACTTTACATCTTTAGGAGCGTTTTTTAAAGAATTTGGATCGAATTCTGAAAACCAGAAAAAATAGTTTTTAAAAATTTCTTTGTTTTCAAAATTTAAAATAGAATTTAAATGTTTACTTGGGATATAAACCAGACAATGAGCGAAGTAACTCATCTATCTTATAGAGATTGTGAGTCATCTTGGTTTTCTACTATGGAATTCTCAATTGCTCCTACAAGATGGGTATCTCTTTGAGGCTCACCAATCTTGACCAGATCTCAATTTCTTTTTAACACGGTACTGAATACTCGTTTGGGTTTTATGGGCTCTGATACCGTATTTGATAGTATGAAGTTCTCTCTCAAAACCAATTGGTAATGAGTGAAGTAATCCATCTATCTTTATGTAGGATGTGAGTCTCCTTAGATTTTTTTTATTTTTTTATCGTGAAATTCTTAATTGAGAAAACTAGCACAATTTTAAATACCTAAATGTTCCCACAGAGTCTAAAAAAACTACTTTTTCAAGTTTTCAAAACTTGCTTGGAATTGTATACCATCTCCATATGTATAACAAAACAAAGACTCATCGGTAGCAGCAGTGCCTATTAACTTTGATTTTCAAAAATAATAAACAAAATGGCATTAAACGGGCCTAAAGTAAGATTTTTAGTTTTGTAGGCTTTCTCAAACACAACCTTACTTGAACAGTGAGTTGTACAACGAACTGTGTCCTTGTGTTCTATATAAAGCTTTCCCAAACAATGAAGTACTTTCTGCCGAGTGTATCCCTCCAATCTTAAACTAGGAACCTGCTATATTATTGGTTGGTGTTAGAAGACTTCATTGTTTTACATTTCATTTCTTATGCAGTGCTACCGTCGTCAAGGAGAATCGACATCGGTCACTGGTCGAAACTTCAAACAGGATATCCTGATCAAACCTGGTTGGCTAGTGATGGACTAA

mRNA sequence

ATGCAGACTTTGTCCCCAAATATGCCGCTTCATATTGCGTCGGAAACAATATTGAAACTGTTGAGAGCTCGATTTCATCATAAATGTCAAGGACAGATTGTACATAATACCTCCCGTGCTCTAGACCTTGAGGCGAGGTTGGCCAGATTGGAGGAAAGATCAAGACATGCTCAGATCAATGATGAGAGCCTCTGTGATTCTTGTCACGCACGCCTTGGAACTAAATTGTTTGCAATGTACCCTGATGATACAGTTGTCTGTTACAAGTGCTACCGTCGTCAAGGAGAATCGACATCGGTCACTGGTCGAAACTTCAAACAGGATATCCTGATCAAACCTGGTTGGCTAGTGATGGACTAA

Coding sequence (CDS)

ATGCAGACTTTGTCCCCAAATATGCCGCTTCATATTGCGTCGGAAACAATATTGAAACTGTTGAGAGCTCGATTTCATCATAAATGTCAAGGACAGATTGTACATAATACCTCCCGTGCTCTAGACCTTGAGGCGAGGTTGGCCAGATTGGAGGAAAGATCAAGACATGCTCAGATCAATGATGAGAGCCTCTGTGATTCTTGTCACGCACGCCTTGGAACTAAATTGTTTGCAATGTACCCTGATGATACAGTTGTCTGTTACAAGTGCTACCGTCGTCAAGGAGAATCGACATCGGTCACTGGTCGAAACTTCAAACAGGATATCCTGATCAAACCTGGTTGGCTAGTGATGGACTAA

Protein sequence

MQTLSPNMPLHIASETILKLLRARFHHKCQGQIVHNTSRALDLEARLARLEERSRHAQINDESLCDSCHARLGTKLFAMYPDDTVVCYKCYRRQGESTSVTGRNFKQDILIKPGWLVMD*

Homology

[Close]

BLAST of Csa1G714710 vs. TrEMBL
Match: A0A0A0M0Y7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G714710 PE=4 SV=1)

HSP 1 Score: 247.7 bits (631), Expect = 7.3e-63
Identity = 119/119 (100.00%), Postives = 119/119 (100.00%), Query Frame = 1


Query: 1   MQTLSPNMPLHIASETILKLLRARFHHKCQGQIVHNTSRALDLEARLARLEERSRHAQIN 60
           MQTLSPNMPLHIASETILKLLRARFHHKCQGQIVHNTSRALDLEARLARLEERSRHAQIN
Sbjct: 1   MQTLSPNMPLHIASETILKLLRARFHHKCQGQIVHNTSRALDLEARLARLEERSRHAQIN 60

Query: 61  DESLCDSCHARLGTKLFAMYPDDTVVCYKCYRRQGESTSVTGRNFKQDILIKPGWLVMD 120
           DESLCDSCHARLGTKLFAMYPDDTVVCYKCYRRQGESTSVTGRNFKQDILIKPGWLVMD
Sbjct: 61  DESLCDSCHARLGTKLFAMYPDDTVVCYKCYRRQGESTSVTGRNFKQDILIKPGWLVMD 119

[Close]

BLAST of Csa1G714710 vs. TrEMBL
Match: B9SBC2_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1349670 PE=4 SV=1)

HSP 1 Score: 213.4 bits (542), Expect = 1.5e-52
Identity = 97/117 (82.91%), Postives = 109/117 (93.16%), Query Frame = 1


Query: 1    MQTLSPNMPLHIASETILKLLRARFHHKCQGQIVHNTSRALDLEARLARLEERSRHAQIN 60
            ++TLSP MPL +AS+TIL++LRAR HH CQGQIVHN SRA++++ARLAR+EERSRH QIN
Sbjct: 887  LETLSPEMPLQLASDTILRMLRARLHHHCQGQIVHNLSRAINVDARLARMEERSRHVQIN 946

Query: 61   DESLCDSCHARLGTKLFAMYPDDTVVCYKCYRRQGESTSVTGRNFKQDILIKPGWLV 118
            DESLCDSCHARLGTKLFAMYPDDTVVCYKCYRRQGESTSV GRNFKQD+L KPGWLV
Sbjct: 947  DESLCDSCHARLGTKLFAMYPDDTVVCYKCYRRQGESTSVKGRNFKQDVLFKPGWLV 1003

[Close]

BLAST of Csa1G714710 vs. TrEMBL
Match: V4W785_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10014143mg PE=4 SV=1)

HSP 1 Score: 211.5 bits (537), Expect = 5.8e-52
Identity = 96/117 (82.05%), Postives = 111/117 (94.87%), Query Frame = 1


Query: 1   MQTLSPNMPLHIASETILKLLRARFHHKCQGQIVHNTSRALDLEARLARLEERSRHAQIN 60
           ++TLSP+MPL +AS+TIL++LRAR HH  QGQIVHN SRA+D++ARLARLEERSRH QIN
Sbjct: 879 LETLSPDMPLQLASDTILRMLRARLHHHRQGQIVHNLSRAVDIDARLARLEERSRHVQIN 938

Query: 61  DESLCDSCHARLGTKLFAMYPDDTVVCYKCYRRQGESTSVTGRNFKQDILIKPGWLV 118
           DESLCDSCHARLGTKLFAMYPDDT+VCYKCYRRQGESTS+TGR+FK+D+LIKPGWLV
Sbjct: 939 DESLCDSCHARLGTKLFAMYPDDTIVCYKCYRRQGESTSITGRDFKKDVLIKPGWLV 995

[Close]

BLAST of Csa1G714710 vs. TrEMBL
Match: A0A067KJZ5_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08582 PE=4 SV=1)

HSP 1 Score: 209.9 bits (533), Expect = 1.7e-51
Identity = 97/117 (82.91%), Postives = 110/117 (94.02%), Query Frame = 1


Query: 1    MQTLSPNMPLHIASETILKLLRARFHHKCQGQIVHNTSRALDLEARLARLEERSRHAQIN 60
            ++TLSP+MPL +AS+TIL++LRAR HH  QGQIVHN SRA+D++ARLARLEERSRH QIN
Sbjct: 900  LETLSPDMPLQLASDTILRMLRARLHHYRQGQIVHNLSRAIDVDARLARLEERSRHVQIN 959

Query: 61   DESLCDSCHARLGTKLFAMYPDDTVVCYKCYRRQGESTSVTGRNFKQDILIKPGWLV 118
            DESLCDSCHARLGTKLFAMYPDD+VVCYKC+RRQGESTSV GRNFKQD+LIKPGWLV
Sbjct: 960  DESLCDSCHARLGTKLFAMYPDDSVVCYKCFRRQGESTSVKGRNFKQDVLIKPGWLV 1016

[Close]

BLAST of Csa1G714710 vs. TrEMBL
Match: W9QP08_9ROSA (Transforming growth factor-beta receptor-associated protein 1-like protein OS=Morus notabilis GN=L484_019312 PE=4 SV=1)

HSP 1 Score: 206.5 bits (524), Expect = 1.9e-50
Identity = 96/117 (82.05%), Postives = 108/117 (92.31%), Query Frame = 1


Query: 1    MQTLSPNMPLHIASETILKLLRARFHHKCQGQIVHNTSRALDLEARLARLEERSRHAQIN 60
            ++ LS +MPL +ASET+L++LRAR HH  QGQIVHN SRALD +ARLARLEERSRH QIN
Sbjct: 953  LERLSSDMPLQLASETLLRMLRARLHHYRQGQIVHNLSRALDTDARLARLEERSRHVQIN 1012

Query: 61   DESLCDSCHARLGTKLFAMYPDDTVVCYKCYRRQGESTSVTGRNFKQDILIKPGWLV 118
            DE+LCDSCHARLGTKLFAMYPDDTVVCYKC+RRQG+STSVTGRNFKQDIL+KPGWLV
Sbjct: 1013 DETLCDSCHARLGTKLFAMYPDDTVVCYKCFRRQGDSTSVTGRNFKQDILVKPGWLV 1069

[Close]

BLAST of Csa1G714710 vs. TAIR10
Match: AT1G22860.1 (AT1G22860.1 Vacuolar sorting protein 39)

HSP 1 Score: 199.9 bits (507), Expect = 8.9e-52
Identity = 93/117 (79.49%), Postives = 105/117 (89.74%), Query Frame = 1


Query: 1   MQTLSPNMPLHIASETILKLLRARFHHKCQGQIVHNTSRALDLEARLARLEERSRHAQIN 60
           +  LSP+MPL +AS+TIL++LRAR HH  QGQIVHN SRALD+++RLARLEERSRH QIN
Sbjct: 843 LDKLSPDMPLKLASDTILRMLRARVHHHRQGQIVHNISRALDVDSRLARLEERSRHMQIN 902

Query: 61  DESLCDSCHARLGTKLFAMYPDDTVVCYKCYRRQGESTSVTGRNFKQDILIKPGWLV 118
           DESLCDSC+ARLGTKLFAMYPDDT+VCYKCYRR GES SVTGR+FK+D+LIKPGWLV
Sbjct: 903 DESLCDSCYARLGTKLFAMYPDDTIVCYKCYRRLGESKSVTGRDFKRDVLIKPGWLV 959

[Close]

BLAST of Csa1G714710 vs. NCBI nr
Match: gi|700211818|gb|KGN66914.1| (hypothetical protein Csa_1G714710 [Cucumis sativus])

HSP 1 Score: 247.7 bits (631), Expect = 1.1e-62
Identity = 119/119 (100.00%), Postives = 119/119 (100.00%), Query Frame = 1


Query: 1   MQTLSPNMPLHIASETILKLLRARFHHKCQGQIVHNTSRALDLEARLARLEERSRHAQIN 60
           MQTLSPNMPLHIASETILKLLRARFHHKCQGQIVHNTSRALDLEARLARLEERSRHAQIN
Sbjct: 1   MQTLSPNMPLHIASETILKLLRARFHHKCQGQIVHNTSRALDLEARLARLEERSRHAQIN 60

Query: 61  DESLCDSCHARLGTKLFAMYPDDTVVCYKCYRRQGESTSVTGRNFKQDILIKPGWLVMD 120
           DESLCDSCHARLGTKLFAMYPDDTVVCYKCYRRQGESTSVTGRNFKQDILIKPGWLVMD
Sbjct: 61  DESLCDSCHARLGTKLFAMYPDDTVVCYKCYRRQGESTSVTGRNFKQDILIKPGWLVMD 119

[Close]

BLAST of Csa1G714710 vs. NCBI nr
Match: gi|778664656|ref|XP_011660326.1| (PREDICTED: transforming growth factor-beta receptor-associated protein 1 isoform X1 [Cucumis sativus])

HSP 1 Score: 245.4 bits (625), Expect = 5.2e-62
Identity = 117/119 (98.32%), Postives = 119/119 (100.00%), Query Frame = 1


Query: 1    MQTLSPNMPLHIASETILKLLRARFHHKCQGQIVHNTSRALDLEARLARLEERSRHAQIN 60
            ++TLSPNMPLHIASETILKLLRARFHHKCQGQIVHNTSRALDLEARLARLEERSRHAQIN
Sbjct: 893  LETLSPNMPLHIASETILKLLRARFHHKCQGQIVHNTSRALDLEARLARLEERSRHAQIN 952

Query: 61   DESLCDSCHARLGTKLFAMYPDDTVVCYKCYRRQGESTSVTGRNFKQDILIKPGWLVMD 120
            DESLCDSCHARLGTKLFAMYPDDTVVCYKCYRRQGESTSVTGRNFKQDILIKPGWLVMD
Sbjct: 953  DESLCDSCHARLGTKLFAMYPDDTVVCYKCYRRQGESTSVTGRNFKQDILIKPGWLVMD 1011

[Close]

BLAST of Csa1G714710 vs. NCBI nr
Match: gi|778664662|ref|XP_011660329.1| (PREDICTED: transforming growth factor-beta receptor-associated protein 1 isoform X3 [Cucumis sativus])

HSP 1 Score: 245.4 bits (625), Expect = 5.2e-62
Identity = 117/119 (98.32%), Postives = 119/119 (100.00%), Query Frame = 1


Query: 1   MQTLSPNMPLHIASETILKLLRARFHHKCQGQIVHNTSRALDLEARLARLEERSRHAQIN 60
           ++TLSPNMPLHIASETILKLLRARFHHKCQGQIVHNTSRALDLEARLARLEERSRHAQIN
Sbjct: 596 LETLSPNMPLHIASETILKLLRARFHHKCQGQIVHNTSRALDLEARLARLEERSRHAQIN 655

Query: 61  DESLCDSCHARLGTKLFAMYPDDTVVCYKCYRRQGESTSVTGRNFKQDILIKPGWLVMD 120
           DESLCDSCHARLGTKLFAMYPDDTVVCYKCYRRQGESTSVTGRNFKQDILIKPGWLVMD
Sbjct: 656 DESLCDSCHARLGTKLFAMYPDDTVVCYKCYRRQGESTSVTGRNFKQDILIKPGWLVMD 714

[Close]

BLAST of Csa1G714710 vs. NCBI nr
Match: gi|659118346|ref|XP_008459073.1| (PREDICTED: transforming growth factor-beta receptor-associated protein 1 homolog isoform X1 [Cucumis melo])

HSP 1 Score: 237.3 bits (604), Expect = 1.4e-59
Identity = 112/119 (94.12%), Postives = 117/119 (98.32%), Query Frame = 1


Query: 1    MQTLSPNMPLHIASETILKLLRARFHHKCQGQIVHNTSRALDLEARLARLEERSRHAQIN 60
            ++TLSP+MPL IASETILKLL+ARFHHKCQGQIVHNTSRALDLEARLARLEERSRH QIN
Sbjct: 893  LETLSPDMPLQIASETILKLLKARFHHKCQGQIVHNTSRALDLEARLARLEERSRHVQIN 952

Query: 61   DESLCDSCHARLGTKLFAMYPDDTVVCYKCYRRQGESTSVTGRNFKQDILIKPGWLVMD 120
            DESLCDSCHARLGTKLFAMYPDDTVVCYKCYRRQGESTSVTGRNFKQD+LIKPGWLVMD
Sbjct: 953  DESLCDSCHARLGTKLFAMYPDDTVVCYKCYRRQGESTSVTGRNFKQDVLIKPGWLVMD 1011

[Close]

BLAST of Csa1G714710 vs. NCBI nr
Match: gi|659118348|ref|XP_008459074.1| (PREDICTED: transforming growth factor-beta receptor-associated protein 1 homolog isoform X2 [Cucumis melo])

HSP 1 Score: 237.3 bits (604), Expect = 1.4e-59
Identity = 112/119 (94.12%), Postives = 117/119 (98.32%), Query Frame = 1


Query: 1   MQTLSPNMPLHIASETILKLLRARFHHKCQGQIVHNTSRALDLEARLARLEERSRHAQIN 60
           ++TLSP+MPL IASETILKLL+ARFHHKCQGQIVHNTSRALDLEARLARLEERSRH QIN
Sbjct: 596 LETLSPDMPLQIASETILKLLKARFHHKCQGQIVHNTSRALDLEARLARLEERSRHVQIN 655

Query: 61  DESLCDSCHARLGTKLFAMYPDDTVVCYKCYRRQGESTSVTGRNFKQDILIKPGWLVMD 120
           DESLCDSCHARLGTKLFAMYPDDTVVCYKCYRRQGESTSVTGRNFKQD+LIKPGWLVMD
Sbjct: 656 DESLCDSCHARLGTKLFAMYPDDTVVCYKCYRRQGESTSVTGRNFKQDVLIKPGWLVMD 714

The following BLAST results are available for this feature:

BLAST of Csa1G714710 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0M0Y7_CUCSA	7.3e-63	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G714710 PE=4 SV=1	[more]
B9SBC2_RICCO	1.5e-52	82.91	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1349670 PE=4 SV=1	[more]
V4W785_9ROSI	5.8e-52	82.05	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10014143mg PE=4 SV=1	[more]
A0A067KJZ5_JATCU	1.7e-51	82.91	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08582 PE=4 SV=1	[more]
W9QP08_9ROSA	1.9e-50	82.05	Transforming growth factor-beta receptor-associated protein 1-like protein OS=Mo...	[more]

BLAST of Csa1G714710 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G22860.1	8.9e-52	79.49	Vacuolar sorting protein 39	[more]

BLAST of Csa1G714710 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700211818\|gb\|KGN66914.1\|	1.1e-62	100.00	hypothetical protein Csa_1G714710 [Cucumis sativus]	[more]
gi\|778664656\|ref\|XP_011660326.1\|	5.2e-62	98.32	PREDICTED: transforming growth factor-beta receptor-associated protein 1 isoform...	[more]
gi\|778664662\|ref\|XP_011660329.1\|	5.2e-62	98.32	PREDICTED: transforming growth factor-beta receptor-associated protein 1 isoform...	[more]
gi\|659118346\|ref\|XP_008459073.1\|	1.4e-59	94.12	PREDICTED: transforming growth factor-beta receptor-associated protein 1 homolog...	[more]
gi\|659118348\|ref\|XP_008459074.1\|	1.4e-59	94.12	PREDICTED: transforming growth factor-beta receptor-associated protein 1 homolog...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001781	Znf_LIM
IPR019453	VPS39/TGF_beta_rcpt-assoc_2

Vocabulary: **Molecular Function**
Term	Definition
GO:0008270	zinc ion binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006886	intracellular protein transport
biological_process	GO:0016192	vesicle-mediated transport
cellular_component	GO:0005622	intracellular
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0005515	protein binding

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
CU123028	cucumber EST collection version 3.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa1G714710.1	Csa1G714710.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
CU123028	CU123028	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001781	Zinc finger, LIM-type	GENE3D	G3DSA:2.10.110.10		coord: 12..30 score: 9.4E-4coord: 64..93 score: 9.
IPR019453	Vacuolar sorting protein 39/Transforming growth factor beta receptor-associated domain 2	PFAM	PF10367	Vps39_2	coord: 1..92 score: 3.1
None	No IPR available	unknown	Coil	Coil	coord: 33..60 scor
None	No IPR available	PANTHER	PTHR12894	CNH DOMAIN CONTAINING	coord: 1..112 score: 5.5
None	No IPR available	PANTHER	PTHR12894:SF17	TRANSFORMING GROWTH FACTOR-BETA RECEPTOR-ASSOCIATED PROTEIN 1	coord: 1..112 score: 5.5

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa1G714710	Cla009178	Watermelon (97103) v1	cuwmB056
Csa1G714710	MELO3C021785	Melon (DHL92) v3.5.1	cumeB034
Csa1G714710	ClCG01G008980	Watermelon (Charleston Gray)	cuwcgB023
Csa1G714710	Lsi02G010120	Bottle gourd (USVL1VR-Ls)	culsiB033
Csa1G714710	MELO3C021785.2	Melon (DHL92) v3.6.1	cumedB029
Csa1G714710	Cla97C01G009240	Watermelon (97103) v2	cuwmbB011
Csa1G714710	CSPI01G34840	Wild cucumber (PI 183967)	cpicuB001
Csa1G714710	Cucsa.236650	Cucumber (Gy14) v1	cgycuB336
Csa1G714710	CmaCh13G004500	Cucurbita maxima (Rimu)	cmacuB207
Csa1G714710	Cp4.1LG20g05890	Cucurbita pepo (Zucchini)	cpecuB518
Csa1G714710	CsGy1G033350	Cucumber (Gy14) v2	cgybcuB002
Csa1G714710	Carg21431	Silver-seed gourd	carcuB0429

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa1G714710	Cucurbita pepo (Zucchini)	cpecuB021
Csa1G714710	Silver-seed gourd	carcuB0482
Csa1G714710	Wax gourd	cuwgoB031
Csa1G714710	Cucurbita maxima (Rimu)	cmacuB400
Csa1G714710	Cucurbita moschata (Rifu)	cmocuB192
Csa1G714710	Cucurbita moschata (Rifu)	cmocuB387