Csa1G703040 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa1G703040
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionSimilarity to DNA helicase; contains IPR027417 (P-loop containing nucleoside triphosphate hydrolase)
LocationChr1 : 28545480 .. 28547722 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TCGTCTTCCTCTTCGACCCTCACTCCGCCGACCAGACCATCAGACGAACAACCACCGTCGATCTCTGAAAATGTCGTCGACCGTCTCCCAATGTTGTCTATCACTGCAAATCGTCGCCCAATGTCCATCTTTGGAACCAAACGCCCGCCGTCGACGTTGGAGACATTTACTAAGGTTAGGTTTTGTTACTGTCTCTGATTCTTCTTCTTCTTCCTTTTCATTTCTTTCTTTTTGTTTTTTTGTCTCTGTATTAAAACTTATTTGTTGAGGAACACTAGTTTTGATTGAATTTTTTTAGGGTAGATTTTGTTTTCCCAAAGAGAAGAACACCAGTCCATATTAAGCCATGGAATTCTTTGATTGTAAAATCTTCACCAAAATTTTCATAATTATTTTTTATGGTGTCATTCCAATTGTTTGTTAGTGTCGATTTCTTTGCAATCTTCAGAATTCTTTTCTTTGTTTTCAAGAATTTGTGTAGGTTGGTAGAGATTTGCACTTGTGAAACAACACAAGATTTTGTTATAGTTTAAATCTATAAAAATTAGAGAATCTAAGAAGTGTGATTAACGATAACAATCTGAGGAGCTTGAGAGGGTAATTGCATCCAATGTGTGTGGATCATTATTTAACAAATATGAGGAGCTTTTGATGAGAAGAAATAATTGCATTGTAGTTTTGAAATCTGTTCAACAATCCATGGATTTGCTTGGTCTTCCACAAACTACAAATAAAAGAACCATTGTGAATTTCTGTTTTCAGAATGCTTCATTGTTCTTTTGCACGGTTTCAGGTACGTTTAAGTTGTATTTGAAGTCATTAGAGCCATTGAAGGCTTTGGTGATTGATGAAGCAGCACAGTTGAAAGAGTGTGAGTGTGTTATTCCAATGCAACTGGCTGACATAAAGCATGCAATCCTCATAGGTGATGAGTGCCAATTGCCAGCATTGGTTTAGAGCAATGTAAGAAAGTTTCTCCCTTTATTTAATCATATTTGTTTTAACATATAGTGACACTTCGATACACATTTGTTAAACATGATAAATACCTTTTGAACACTCACGTACACATATGGATAACCTAAACATTTCATAGACTTAAAATTCCCATACCCTATTTGAGAGGCTAAGCTCATTGGGGCATCCAAAACATCTTCTCAATGTGCAATACAGAATGCATCCATCCATCAGCCTTTTCCCAAACTCAAAATTCTACTCAAGTCAGATCTCAGATGGTCCTAATGTCAAAGCTAAAGCCTATGAAAAGACGTTTCTTCCCGGACCGATGTTCGATTCGTATTCTTTCATAAACATAAATGGTGCACGAGAAGAAAAGGATGAAATTGGACACAGTTTGAAAAACATGGTAGAGGTTGATGTTGTGCTCAAAATTGTTCATTCTTTGTCTCAAGGTATAATATTTTCTCTATTTGATCTTTGTTTTCGGTTTGGTTACTTCTATGTCAGATGAAATTTTTTCAAATTGTTATATACATTATTATTTTGCTATTTTTATGTAAATCTCTTTCGTTTTCTTAGAAGCATGAAAGCATTTCAACTTCGTTAGTGTGTCTTTCACATGTGTGTACCATACATATCGAATACTTTAGTTTTCCTACTGCGTTTGACCCTAAGATACTAAAGCCTAAATGTATAAGACCCTTGTTGGTGGAAAAGATTTTATCTCACAGTAGTTGTAGGAAATCAAAATAGTACTAAAATATGTTAGACATATATTTAATGCTTATTTCGTACTAAATAGACCGTAGATAAAATAGCAAAACTAGAGAGTGAAATACATGGTGTGTCAAAGTAAAATTTGAAATATATTGTTAAATTGCAGAACTCATAGACTATAATTTTTCATCTGTAAAACAGTATGTCTTCTAAAAACATGCATGTCCATGTTGTGCCCATGGCGTGTCATCTTGTTTCATGTCGAATCTTTAATACATATATATTTTTTAATATAATATATGTTTGTAGCATGTGTTGACTCAAAAGGAAAGATGAGCATTGGTGTAGTGTCCCCATATTCAGCTCAAGTCGTTACCATTCAACGCAAAATTGGGAAGAAGTACAATTGTAATGGATTTAATGTGAAGGTGAGTTCAGTTGATGGCTTTCAAGGAGGGGTGGAAGATATCATTATTATTTCCACTGTTTGGTGTAATACAGGATCGTCCATCGGGTTTTTGTCGAGTAATCAAAGAACAAATGTCGCACTTACAAGAGCTAGGTAG

mRNA sequence

ATGAGCATTGGTGTAGTGTCCCCATATTCAGCTCAAGTCGTTACCATTCAACGCAAAATTGGGAAGAAGTACAATTGTAATGGATTTAATGTGAAGGTGAGTTCAGTTGATGGCTTTCAAGGAGGGGTGGAAGATATCATTATTATTTCCACTGTTTGGTGTAATACAGGATCGTCCATCGGGTTTTTGTCGAGTAATCAAAGAACAAATGTCGCACTTACAAGAGCTAGGTAG

Coding sequence (CDS)

ATGAGCATTGGTGTAGTGTCCCCATATTCAGCTCAAGTCGTTACCATTCAACGCAAAATTGGGAAGAAGTACAATTGTAATGGATTTAATGTGAAGGTGAGTTCAGTTGATGGCTTTCAAGGAGGGGTGGAAGATATCATTATTATTTCCACTGTTTGGTGTAATACAGGATCGTCCATCGGGTTTTTGTCGAGTAATCAAAGAACAAATGTCGCACTTACAAGAGCTAGGTAG

Protein sequence

MSIGVVSPYSAQVVTIQRKIGKKYNCNGFNVKVSSVDGFQGGVEDIIIISTVWCNTGSSIGFLSSNQRTNVALTRAR*
Homology
[Close]
BLAST of Csa1G703040 vs. Swiss-Prot
Match: HCS1_YEAST (DNA polymerase alpha-associated DNA helicase A OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=HCS1 PE=1 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 2.3e-10
Identity = 34/76 (44.74%), Postives = 49/76 (64.47%), Query Frame = 1 

Query: 2   SIGVVSPYSAQVVTIQRKIGKKYNCNGFNVKVSSVDGFQGGVEDIIIISTVWCNTGSSIG 61
           SIGV+SPY+AQV  +++ I  +      ++++S+VDGFQG  +D+II+S V  N    +G
Sbjct: 568 SIGVISPYNAQVSHLKKLIHDELKLT--DIEISTVDGFQGREKDVIILSLVRSNEKFEVG 627

Query: 62  FLSSNQRTNVALTRAR 78
           FL   +R NVA+TR R
Sbjct: 628 FLKEERRLNVAMTRPR 641

[Close]
BLAST of Csa1G703040 vs. Swiss-Prot
Match: YGSA_SCHPO (Uncharacterized ATP-dependent helicase C29A10.10c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC29A10.10c PE=3 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 2.0e-09
Identity = 35/76 (46.05%), Postives = 47/76 (61.84%), Query Frame = 1 

Query: 3    IGVVSPYSAQVVTIQRKIGKKYNCNGF-NVKVSSVDGFQGGVEDIIIISTVWCNTGSSIG 62
            IGVV+PY +QV  ++ +  +KY    F ++ + +VDGFQG  +DIII S V  +    IG
Sbjct: 1671 IGVVTPYRSQVQQLRSQFQRKYGSIIFKHLDIHTVDGFQGQEKDIIIFSCVRSSMSGGIG 1730

Query: 63   FLSSNQRTNVALTRAR 78
            FL   +R NVALTRA+
Sbjct: 1731 FLQDLRRLNVALTRAK 1746

[Close]
BLAST of Csa1G703040 vs. Swiss-Prot
Match: RENT1_NEUCR (Regulator of nonsense transcripts 1 homolog OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=2E4.130 PE=3 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 2.2e-08
Identity = 34/78 (43.59%), Postives = 44/78 (56.41%), Query Frame = 1 

Query: 3   IGVVSPYSAQ---VVTIQRKIGKKYNCNGFNVKVSSVDGFQGGVEDIIIISTVWCNTGSS 62
           IGV++PY  Q   +V   +  G     +   V+V+SVD FQG  +D I++S V  N    
Sbjct: 775 IGVITPYEGQRSYIVNTMQNTGTFKKESYREVEVASVDAFQGREKDFIVLSCVRSNENQG 834

Query: 63  IGFLSSNQRTNVALTRAR 78
           IGFLS  +R NVALTRA+
Sbjct: 835 IGFLSDPRRLNVALTRAK 852

[Close]
BLAST of Csa1G703040 vs. Swiss-Prot
Match: SETX_HUMAN (Probable helicase senataxin OS=Homo sapiens GN=SETX PE=1 SV=4)

HSP 1 Score: 58.9 bits (141), Expect = 2.8e-08
Identity = 32/77 (41.56%), Postives = 49/77 (63.64%), Query Frame = 1 

Query: 2    SIGVVSPYSAQVVTIQRKIGKKYNCNGFNVKVSSVDGFQGGVEDIIIISTVWCNT-GSSI 61
            +IG+++ Y AQ   IQ+ + K+++  G   +V +VD FQG  +D +I++ V  N+   SI
Sbjct: 2341 NIGIITHYKAQKTMIQKDLDKEFDRKG-PAEVDTVDAFQGRQKDCVIVTCVRANSIQGSI 2400

Query: 62   GFLSSNQRTNVALTRAR 78
            GFL+S QR NV +TRA+
Sbjct: 2401 GFLASLQRLNVTITRAK 2416

[Close]
BLAST of Csa1G703040 vs. Swiss-Prot
Match: MAA3_ARATH (Probable helicase MAGATAMA 3 OS=Arabidopsis thaliana GN=MAA3 PE=2 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 2.8e-08
Identity = 29/76 (38.16%), Postives = 45/76 (59.21%), Query Frame = 1 

Query: 3   IGVVSPYSAQVVTIQRKIGKKYNCNGFNV-KVSSVDGFQGGVEDIIIISTVWCNTGSSIG 62
           + ++SPY+ QV T + +  + +      V  +++VDGFQG  +D+ I S V  N    IG
Sbjct: 647 LAIISPYNYQVKTFKDRFKEMFGTEAEKVVDINTVDGFQGREKDVAIFSCVRANENGQIG 706

Query: 63  FLSSNQRTNVALTRAR 78
           FLS+++R NV +TRA+
Sbjct: 707 FLSNSRRMNVGITRAK 722

[Close]
BLAST of Csa1G703040 vs. TrEMBL
Match: A0A0A0LU39_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G325370 PE=4 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 3.2e-35
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 1 

Query: 1  MSIGVVSPYSAQVVTIQRKIGKKYNCNGFNVKVSSVDGFQGGVEDIIIISTVWCNTGSSI 60
          MSIGVVSPYSAQVVTIQRKIGKKYNCNGFNVKVSSVDGFQGGVEDIIIISTVWCNTGSSI
Sbjct: 1  MSIGVVSPYSAQVVTIQRKIGKKYNCNGFNVKVSSVDGFQGGVEDIIIISTVWCNTGSSI 60

Query: 61 GFLSSNQRTNVALTRAR 78
          GFLSSNQRTNVALTRAR
Sbjct: 61 GFLSSNQRTNVALTRAR 77

[Close]
BLAST of Csa1G703040 vs. TrEMBL
Match: A0A0A0K9F2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G291120 PE=4 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 1.3e-23
Identity = 61/78 (78.21%), Postives = 66/78 (84.62%), Query Frame = 1 

Query: 1  MSIGVVSPYSAQVVTIQRKIGKKYN-CNGFNVKVSSVDGFQGGVEDIIIISTVWCNTGSS 60
          +SIGVVSPYSAQV  I+ K+G+ YN CN F V+VSSVDGFQGG EDIIIISTV  N  SS
Sbjct: 15 ISIGVVSPYSAQVAAIEHKLGRNYNKCNSFQVRVSSVDGFQGGEEDIIIISTVRSNRSSS 74

Query: 61 IGFLSSNQRTNVALTRAR 78
          IGFLSSNQRTNVALTRAR
Sbjct: 75 IGFLSSNQRTNVALTRAR 92

[Close]
BLAST of Csa1G703040 vs. TrEMBL
Match: A0A067DGU8_CITSI (Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g048652mg PE=4 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 1.4e-22
Identity = 59/78 (75.64%), Postives = 67/78 (85.90%), Query Frame = 1 

Query: 1   MSIGVVSPYSAQVVTIQRKIGKKY-NCNGFNVKVSSVDGFQGGVEDIIIISTVWCNTGSS 60
           +SIGVVSPY+AQVV I++KIG +Y N +GF VKV SVDGFQGG EDIIIISTV CNTG S
Sbjct: 744 VSIGVVSPYTAQVVAIRKKIGSEYENKDGFTVKVKSVDGFQGGEEDIIIISTVRCNTGGS 803

Query: 61  IGFLSSNQRTNVALTRAR 78
           IGF+S+ QR NVALTRAR
Sbjct: 804 IGFISNPQRVNVALTRAR 821

[Close]
BLAST of Csa1G703040 vs. TrEMBL
Match: V4U3Y4_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10007134mg PE=4 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 4.1e-22
Identity = 59/78 (75.64%), Postives = 66/78 (84.62%), Query Frame = 1 

Query: 1   MSIGVVSPYSAQVVTIQRKIGKKY-NCNGFNVKVSSVDGFQGGVEDIIIISTVWCNTGSS 60
           +SIGVVSPY+AQVV I +KIG +Y N +GF VKV SVDGFQGG EDIIIISTV CNTG S
Sbjct: 726 VSIGVVSPYTAQVVAICKKIGSEYENKDGFTVKVKSVDGFQGGEEDIIIISTVRCNTGGS 785

Query: 61  IGFLSSNQRTNVALTRAR 78
           IGF+S+ QR NVALTRAR
Sbjct: 786 IGFISNPQRVNVALTRAR 803

[Close]
BLAST of Csa1G703040 vs. TrEMBL
Match: A0A067F3Q5_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g000228mg PE=4 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 5.3e-22
Identity = 58/78 (74.36%), Postives = 66/78 (84.62%), Query Frame = 1 

Query: 1   MSIGVVSPYSAQVVTIQRKIGKKY-NCNGFNVKVSSVDGFQGGVEDIIIISTVWCNTGSS 60
           +SIGVVSPY+AQVV I++KIG +Y N +GF VKV S+DGFQGG EDIIIISTV CNTG S
Sbjct: 751 VSIGVVSPYTAQVVAIRKKIGFEYENKDGFTVKVKSIDGFQGGEEDIIIISTVRCNTGGS 810

Query: 61  IGFLSSNQRTNVALTRAR 78
           IGF+S  QR NVALTRAR
Sbjct: 811 IGFISKPQRVNVALTRAR 828

[Close]
BLAST of Csa1G703040 vs. TAIR10
Match: AT1G65810.1 (AT1G65810.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein)

HSP 1 Score: 103.2 bits (256), Expect = 7.3e-23
Identity = 54/78 (69.23%), Postives = 59/78 (75.64%), Query Frame = 1 

Query: 1   MSIGVVSPYSAQVVTIQRKIGKKYNCNG-FNVKVSSVDGFQGGVEDIIIISTVWCNTGSS 60
           +S+GV+SPY AQV  IQ +IG+KYN  G F V V SVDGFQGG EDIIIISTV  N   +
Sbjct: 714 ISVGVISPYKAQVFAIQERIGEKYNTEGTFTVSVRSVDGFQGGEEDIIIISTVRSNGNGA 773

Query: 61  IGFLSSNQRTNVALTRAR 78
           IGFLS+ QRTNVALTRAR
Sbjct: 774 IGFLSNQQRTNVALTRAR 791

[Close]
BLAST of Csa1G703040 vs. TAIR10
Match: AT4G05540.1 (AT4G05540.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein)

HSP 1 Score: 96.3 bits (238), Expect = 9.0e-21
Identity = 52/80 (65.00%), Postives = 56/80 (70.00%), Query Frame = 1 

Query: 1   MSIGVVSPYSAQVVTIQRKIGKKYNC---NGFNVKVSSVDGFQGGVEDIIIISTVWCNTG 60
           MS+GV+SPY AQV  IQ +IG KY     N F + V SVDGFQGG EDIIIISTV  N  
Sbjct: 592 MSVGVISPYKAQVSAIQERIGDKYTSVSDNLFTLNVRSVDGFQGGEEDIIIISTVRSNCN 651

Query: 61  SSIGFLSSNQRTNVALTRAR 78
            +IGFLS+ QR NVALTRAR
Sbjct: 652 GNIGFLSNRQRANVALTRAR 671

[Close]
BLAST of Csa1G703040 vs. TAIR10
Match: AT5G37160.1 (AT5G37160.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein)

HSP 1 Score: 95.1 bits (235), Expect = 2.0e-20
Identity = 48/81 (59.26%), Postives = 55/81 (67.90%), Query Frame = 1 

Query: 1   MSIGVVSPYSAQVVTIQRKIGKKYNCNG----FNVKVSSVDGFQGGVEDIIIISTVWCNT 60
           MS+GV+SPY  QV  IQ ++G KYN       F + V SVDGFQGG  D+IIISTV CN 
Sbjct: 721 MSVGVISPYKGQVRAIQERVGDKYNSLSVDQLFTLNVQSVDGFQGGEVDVIIISTVRCNV 780

Query: 61  GSSIGFLSSNQRTNVALTRAR 78
             ++GFLS+ QR NVALTRAR
Sbjct: 781 NGNVGFLSNRQRANVALTRAR 801

[Close]
BLAST of Csa1G703040 vs. TAIR10
Match: AT5G37150.1 (AT5G37150.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein)

HSP 1 Score: 90.1 bits (222), Expect = 6.4e-19
Identity = 48/80 (60.00%), Postives = 55/80 (68.75%), Query Frame = 1 

Query: 1   MSIGVVSPYSAQVVTIQRKIGKKYNC---NGFNVKVSSVDGFQGGVEDIIIISTVWCNTG 60
           +S+GVVSPY  Q+  IQ KIG KY+      F + V SVDGFQGG EDIIIISTV  N+ 
Sbjct: 688 VSVGVVSPYKGQMRAIQEKIGDKYSSLSGQQFALNVRSVDGFQGGEEDIIIISTVRSNSN 747

Query: 61  SSIGFLSSNQRTNVALTRAR 78
             +GFL++ QR NVALTRAR
Sbjct: 748 GKVGFLNNRQRANVALTRAR 767

[Close]
BLAST of Csa1G703040 vs. TAIR10
Match: AT5G37030.1 (AT5G37030.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein)

HSP 1 Score: 89.7 bits (221), Expect = 8.4e-19
Identity = 48/80 (60.00%), Postives = 54/80 (67.50%), Query Frame = 1 

Query: 1   MSIGVVSPYSAQVVTIQRKIGKKYNCNG---FNVKVSSVDGFQGGVEDIIIISTVWCNTG 60
           MS+GV++PY  QV  IQ +I  KY+      F V V SVDGFQGG EDIIIISTV  N+ 
Sbjct: 509 MSVGVITPYKGQVRAIQERIRDKYSSLSGELFTVNVRSVDGFQGGEEDIIIISTVRSNSN 568

Query: 61  SSIGFLSSNQRTNVALTRAR 78
             +GFLS+ QR NVALTRAR
Sbjct: 569 GKVGFLSNRQRANVALTRAR 588

[Close]
BLAST of Csa1G703040 vs. NCBI nr
Match: gi|700210227|gb|KGN65323.1| (hypothetical protein Csa_1G325370 [Cucumis sativus])

HSP 1 Score: 155.2 bits (391), Expect = 4.6e-35
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 1 

Query: 1  MSIGVVSPYSAQVVTIQRKIGKKYNCNGFNVKVSSVDGFQGGVEDIIIISTVWCNTGSSI 60
          MSIGVVSPYSAQVVTIQRKIGKKYNCNGFNVKVSSVDGFQGGVEDIIIISTVWCNTGSSI
Sbjct: 1  MSIGVVSPYSAQVVTIQRKIGKKYNCNGFNVKVSSVDGFQGGVEDIIIISTVWCNTGSSI 60

Query: 61 GFLSSNQRTNVALTRAR 78
          GFLSSNQRTNVALTRAR
Sbjct: 61 GFLSSNQRTNVALTRAR 77

[Close]
BLAST of Csa1G703040 vs. NCBI nr
Match: gi|449443986|ref|XP_004139756.1| (PREDICTED: uncharacterized protein LOC101214715 [Cucumis sativus])

HSP 1 Score: 116.7 bits (291), Expect = 1.8e-23
Identity = 61/78 (78.21%), Postives = 66/78 (84.62%), Query Frame = 1 

Query: 1   MSIGVVSPYSAQVVTIQRKIGKKYN-CNGFNVKVSSVDGFQGGVEDIIIISTVWCNTGSS 60
           +SIGVVSPYSAQV  I+ K+G+ YN CN F V+VSSVDGFQGG EDIIIISTV  N  SS
Sbjct: 555 ISIGVVSPYSAQVAAIEHKLGRNYNKCNSFQVRVSSVDGFQGGEEDIIIISTVRSNRSSS 614

Query: 61  IGFLSSNQRTNVALTRAR 78
           IGFLSSNQRTNVALTRAR
Sbjct: 615 IGFLSSNQRTNVALTRAR 632

[Close]
BLAST of Csa1G703040 vs. NCBI nr
Match: gi|700189208|gb|KGN44441.1| (hypothetical protein Csa_7G291120 [Cucumis sativus])

HSP 1 Score: 116.7 bits (291), Expect = 1.8e-23
Identity = 61/78 (78.21%), Postives = 66/78 (84.62%), Query Frame = 1 

Query: 1  MSIGVVSPYSAQVVTIQRKIGKKYN-CNGFNVKVSSVDGFQGGVEDIIIISTVWCNTGSS 60
          +SIGVVSPYSAQV  I+ K+G+ YN CN F V+VSSVDGFQGG EDIIIISTV  N  SS
Sbjct: 15 ISIGVVSPYSAQVAAIEHKLGRNYNKCNSFQVRVSSVDGFQGGEEDIIIISTVRSNRSSS 74

Query: 61 IGFLSSNQRTNVALTRAR 78
          IGFLSSNQRTNVALTRAR
Sbjct: 75 IGFLSSNQRTNVALTRAR 92

[Close]
BLAST of Csa1G703040 vs. NCBI nr
Match: gi|641822697|gb|KDO42184.1| (hypothetical protein CISIN_1g048652mg, partial [Citrus sinensis])

HSP 1 Score: 113.2 bits (282), Expect = 2.0e-22
Identity = 59/78 (75.64%), Postives = 67/78 (85.90%), Query Frame = 1 

Query: 1   MSIGVVSPYSAQVVTIQRKIGKKY-NCNGFNVKVSSVDGFQGGVEDIIIISTVWCNTGSS 60
           +SIGVVSPY+AQVV I++KIG +Y N +GF VKV SVDGFQGG EDIIIISTV CNTG S
Sbjct: 744 VSIGVVSPYTAQVVAIRKKIGSEYENKDGFTVKVKSVDGFQGGEEDIIIISTVRCNTGGS 803

Query: 61  IGFLSSNQRTNVALTRAR 78
           IGF+S+ QR NVALTRAR
Sbjct: 804 IGFISNPQRVNVALTRAR 821

[Close]
BLAST of Csa1G703040 vs. NCBI nr
Match: gi|568833416|ref|XP_006470890.1| (PREDICTED: uncharacterized protein LOC102614511 [Citrus sinensis])

HSP 1 Score: 113.2 bits (282), Expect = 2.0e-22
Identity = 59/78 (75.64%), Postives = 67/78 (85.90%), Query Frame = 1 

Query: 1   MSIGVVSPYSAQVVTIQRKIGKKY-NCNGFNVKVSSVDGFQGGVEDIIIISTVWCNTGSS 60
           +SIGVVSPY+AQVV I++KIG +Y N +GF VKV SVDGFQGG EDIIIISTV CNTG S
Sbjct: 744 VSIGVVSPYTAQVVAIRKKIGSEYENKDGFTVKVKSVDGFQGGEEDIIIISTVRCNTGGS 803

Query: 61  IGFLSSNQRTNVALTRAR 78
           IGF+S+ QR NVALTRAR
Sbjct: 804 IGFISNPQRVNVALTRAR 821

The following BLAST results are available for this feature:
BLAST of Csa1G703040 vs. Swiss-Prot
Match NameE-valueIdentityDescription
HCS1_YEAST2.3e-1044.74DNA polymerase alpha-associated DNA helicase A OS=Saccharomyces cerevisiae (stra... [more]
YGSA_SCHPO2.0e-0946.05Uncharacterized ATP-dependent helicase C29A10.10c OS=Schizosaccharomyces pombe (... [more]
RENT1_NEUCR2.2e-0843.59Regulator of nonsense transcripts 1 homolog OS=Neurospora crassa (strain ATCC 24... [more]
SETX_HUMAN2.8e-0841.56Probable helicase senataxin OS=Homo sapiens GN=SETX PE=1 SV=4[more]
MAA3_ARATH2.8e-0838.16Probable helicase MAGATAMA 3 OS=Arabidopsis thaliana GN=MAA3 PE=2 SV=1[more]
BLAST of Csa1G703040 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LU39_CUCSA3.2e-35100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G325370 PE=4 SV=1[more]
A0A0A0K9F2_CUCSA1.3e-2378.21Uncharacterized protein OS=Cucumis sativus GN=Csa_7G291120 PE=4 SV=1[more]
A0A067DGU8_CITSI1.4e-2275.64Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g048652mg PE=4 S... [more]
V4U3Y4_9ROSI4.1e-2275.64Uncharacterized protein OS=Citrus clementina GN=CICLE_v10007134mg PE=4 SV=1[more]
A0A067F3Q5_CITSI5.3e-2274.36Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g000228mg PE=4 SV=1[more]
BLAST of Csa1G703040 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G65810.17.3e-2369.23 P-loop containing nucleoside triphosphate hydrolases superfamily pro... [more]
AT4G05540.19.0e-2165.00 P-loop containing nucleoside triphosphate hydrolases superfamily pro... [more]
AT5G37160.12.0e-2059.26 P-loop containing nucleoside triphosphate hydrolases superfamily pro... [more]
AT5G37150.16.4e-1960.00 P-loop containing nucleoside triphosphate hydrolases superfamily pro... [more]
AT5G37030.18.4e-1960.00 P-loop containing nucleoside triphosphate hydrolases superfamily pro... [more]
BLAST of Csa1G703040 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700210227|gb|KGN65323.1|4.6e-35100.00hypothetical protein Csa_1G325370 [Cucumis sativus][more]
gi|449443986|ref|XP_004139756.1|1.8e-2378.21PREDICTED: uncharacterized protein LOC101214715 [Cucumis sativus][more]
gi|700189208|gb|KGN44441.1|1.8e-2378.21hypothetical protein Csa_7G291120 [Cucumis sativus][more]
gi|641822697|gb|KDO42184.1|2.0e-2275.64hypothetical protein CISIN_1g048652mg, partial [Citrus sinensis][more]
gi|568833416|ref|XP_006470890.1|2.0e-2275.64PREDICTED: uncharacterized protein LOC102614511 [Citrus sinensis][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008152 metabolic process
cellular_component GO:0005575 cellular_component
molecular_function GO:0005524 ATP binding
molecular_function GO:0016787 hydrolase activity
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU125523cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa1G703040.1Csa1G703040.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU125523CU125523transcribed_cluster


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa1G703040Melon (DHL92) v3.5.1cumeB017
Csa1G703040Watermelon (Charleston Gray)cuwcgB023
Csa1G703040Watermelon (97103) v1cuwmB044
Csa1G703040Watermelon (97103) v1cuwmB050
Csa1G703040Cucurbita pepo (Zucchini)cpecuB021
Csa1G703040Cucurbita pepo (Zucchini)cpecuB518
Csa1G703040Bottle gourd (USVL1VR-Ls)culsiB033
Csa1G703040Cucumber (Gy14) v2cgybcuB002
Csa1G703040Melon (DHL92) v3.6.1cumedB012
Csa1G703040Silver-seed gourdcarcuB0973
Csa1G703040Watermelon (97103) v2cuwmbB011
Csa1G703040Wax gourdcuwgoB031
Csa1G703040Cucumber (Gy14) v1cgycuB035
Csa1G703040Cucurbita maxima (Rimu)cmacuB207
Csa1G703040Cucurbita maxima (Rimu)cmacuB400
Csa1G703040Cucurbita moschata (Rifu)cmocuB192
Csa1G703040Cucurbita moschata (Rifu)cmocuB387