Csa1G696530 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa1G696530
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr1 : 27991426 .. 27992096 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CGGACCGACTATGCCCAAAACCGATGGTTGTTCATACAATATTTAATGTTTAGCATGTTAGCAGGCAATTATCATCTATTAATAGCTAATTAATACATATGGGATGAAGGAATGATTGGCCAATTATACTGTAGCCAATATGTTTGATTATTTTTTGTCCTTATACACTTCCTTTCCATCTTTCTTCCTCTCTCTCTTCACTTTCTTCTCCAAGGCCCCATTTGTCTCTTCTTATGATCATTCATTTATGTTTCTCCTACAGTTCTTCACTTATCTCTTCCTTTTCTCTCTCTATTCTTTTTTTCAAATAAACGTTCTCATCCTCCTTTCGGAGCTCACTGATCAAATCCGACCCATCTTTCTGTATGCTCGATGGTCGACATTTGTCCAACCTCCAAACCCACCAGATAAAAACGACGAATTCAACACCAATGACGGTTTTTGTCCAAAACTAGCTTTGCTCCGTCAATGTTCACCTCTACTGACACAGAAAGAAGCAACTCATCTTTCTAGTGAGTGTTCTCAACATGTACCCTCATTAACTTTCTAATTCTGAACATATAAGGATATACTCTAAACCAAAAAAAATACATCTATGTGTGTTAAGAGATGAATGAGCTAAAAATACCTCGAAAAGGAAGTCCTCAGCTACAACAAGATCTTCACAGTCA

mRNA sequence

ATGTTTGATTATTTTTTGTCCTTATACACTTCCTTTCCATCTTTCTTCCTCTCTCTCTTCACTTTCTTCTCCAAGGCCCCATTTGTCTCTTCTTATGATCATTCATTTATGTTTCTCCTACAGTTCTTCACTTATCTCTTCCTTTTCTCTCTCTATTCTTTTTTTCAAATAAACGTTCTCATCCTCCTTTCGGAGCTCACTGATCAAATCCGACCCATCTTTCTGTATGCTCGATGGTCGACATTTGTCCAACCTCCAAACCCACCAGATAAAAACGACGAATTCAACACCAATGACGGTTTTTGTCCAAAACTAGCTTTGCTCCGTCAATGTTCACCTCTACTGACACAGAAAGAAGCAACTCATCTTTCTAGTGAGTGTTCTCAACATGTACCCTCATTAACTTTCTAA

Coding sequence (CDS)

ATGTTTGATTATTTTTTGTCCTTATACACTTCCTTTCCATCTTTCTTCCTCTCTCTCTTCACTTTCTTCTCCAAGGCCCCATTTGTCTCTTCTTATGATCATTCATTTATGTTTCTCCTACAGTTCTTCACTTATCTCTTCCTTTTCTCTCTCTATTCTTTTTTTCAAATAAACGTTCTCATCCTCCTTTCGGAGCTCACTGATCAAATCCGACCCATCTTTCTGTATGCTCGATGGTCGACATTTGTCCAACCTCCAAACCCACCAGATAAAAACGACGAATTCAACACCAATGACGGTTTTTGTCCAAAACTAGCTTTGCTCCGTCAATGTTCACCTCTACTGACACAGAAAGAAGCAACTCATCTTTCTAGTGAGTGTTCTCAACATGTACCCTCATTAACTTTCTAA

Protein sequence

MFDYFLSLYTSFPSFFLSLFTFFSKAPFVSSYDHSFMFLLQFFTYLFLFSLYSFFQINVLILLSELTDQIRPIFLYARWSTFVQPPNPPDKNDEFNTNDGFCPKLALLRQCSPLLTQKEATHLSSECSQHVPSLTF*
Homology
[Close]
BLAST of Csa1G696530 vs. TrEMBL
Match: A0A0A0LY70_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G696530 PE=4 SV=1)

HSP 1 Score: 283.1 bits (723), Expect = 1.8e-73
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 1 

Query: 1   MFDYFLSLYTSFPSFFLSLFTFFSKAPFVSSYDHSFMFLLQFFTYLFLFSLYSFFQINVL 60
           MFDYFLSLYTSFPSFFLSLFTFFSKAPFVSSYDHSFMFLLQFFTYLFLFSLYSFFQINVL
Sbjct: 1   MFDYFLSLYTSFPSFFLSLFTFFSKAPFVSSYDHSFMFLLQFFTYLFLFSLYSFFQINVL 60

Query: 61  ILLSELTDQIRPIFLYARWSTFVQPPNPPDKNDEFNTNDGFCPKLALLRQCSPLLTQKEA 120
           ILLSELTDQIRPIFLYARWSTFVQPPNPPDKNDEFNTNDGFCPKLALLRQCSPLLTQKEA
Sbjct: 61  ILLSELTDQIRPIFLYARWSTFVQPPNPPDKNDEFNTNDGFCPKLALLRQCSPLLTQKEA 120

Query: 121 THLSSECSQHVPSLTF 137
           THLSSECSQHVPSLTF
Sbjct: 121 THLSSECSQHVPSLTF 136

[Close]
BLAST of Csa1G696530 vs. NCBI nr
Match: gi|700211724|gb|KGN66820.1| (hypothetical protein Csa_1G696530 [Cucumis sativus])

HSP 1 Score: 283.1 bits (723), Expect = 2.6e-73
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 1 

Query: 1   MFDYFLSLYTSFPSFFLSLFTFFSKAPFVSSYDHSFMFLLQFFTYLFLFSLYSFFQINVL 60
           MFDYFLSLYTSFPSFFLSLFTFFSKAPFVSSYDHSFMFLLQFFTYLFLFSLYSFFQINVL
Sbjct: 1   MFDYFLSLYTSFPSFFLSLFTFFSKAPFVSSYDHSFMFLLQFFTYLFLFSLYSFFQINVL 60

Query: 61  ILLSELTDQIRPIFLYARWSTFVQPPNPPDKNDEFNTNDGFCPKLALLRQCSPLLTQKEA 120
           ILLSELTDQIRPIFLYARWSTFVQPPNPPDKNDEFNTNDGFCPKLALLRQCSPLLTQKEA
Sbjct: 61  ILLSELTDQIRPIFLYARWSTFVQPPNPPDKNDEFNTNDGFCPKLALLRQCSPLLTQKEA 120

Query: 121 THLSSECSQHVPSLTF 137
           THLSSECSQHVPSLTF
Sbjct: 121 THLSSECSQHVPSLTF 136

The following BLAST results are available for this feature:
BLAST of Csa1G696530 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LY70_CUCSA1.8e-73100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G696530 PE=4 SV=1[more]
BLAST of Csa1G696530 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700211724|gb|KGN66820.1|2.6e-73100.00hypothetical protein Csa_1G696530 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU088236cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa1G696530.1Csa1G696530.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU088236CU088236transcribed_cluster


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa1G696530CSPI01G33920Wild cucumber (PI 183967)cpicuB001
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa1G696530Watermelon (97103) v2cuwmbB075
Csa1G696530Watermelon (97103) v2cuwmbB082
Csa1G696530Wax gourdcuwgoB116
Csa1G696530Cucumber (Gy14) v1cgycuB470
Csa1G696530Cucurbita moschata (Rifu)cmocuB084
Csa1G696530Melon (DHL92) v3.5.1cumeB045
Csa1G696530Watermelon (Charleston Gray)cuwcgB077
Csa1G696530Watermelon (Charleston Gray)cuwcgB085
Csa1G696530Watermelon (97103) v1cuwmB044
Csa1G696530Watermelon (97103) v1cuwmB089
Csa1G696530Cucurbita pepo (Zucchini)cpecuB660
Csa1G696530Bottle gourd (USVL1VR-Ls)culsiB080
Csa1G696530Cucumber (Gy14) v2cgybcuB002
Csa1G696530Melon (DHL92) v3.6.1cumedB037
Csa1G696530Silver-seed gourdcarcuB0036