Csa1G696450 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa1G696450
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	TATA-binding protein-associated factor 2N; contains IPR001876 (Zinc finger, RanBP2-type)
Location	Chr1 : 27930538 .. 27934631 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGAATCTCGATCTACTTCCAAACTTTTGTTCTGGGAATAAAATTTTCTATTCTCTTACAGCTGTGTTGCCGCCTGCAAGAAATTAGATCTTGAGGAGGGCATTGGGTAAGTGCGGTCTCAGATCATGATTTTGGGAATTGCTCTTTTTTCCATGTAAAGACAATTTAATTTTGGGGTTATAACTTGTGCAAGAAATTCTGGGTTGCTGAGTGGAGAGCTATCATATCTACCGTTTCCATTTTGGGATTTTATGGTGTCGGGCATGGTTGGAGTAAGATGTGTTATAATACCAATCATAATCAAATCATGGTGAGGTGAGGGCTTTCTCTCATGAAATAGGAGATGATCGAATAATAAGCTAAAGAGGTGTTGGTCCTGCCTTCTAGAGACTATTGGTATAGGCTCTAAAACTTAAAGGTGCTTGACCTTGGCTCTCTGCAGAACTTAAAGATGGAACTTTTTATTGTCTAGATTTTCATCCAAGGGGCAAGGGATGAGATTCTTCTCATGGAACTGGCTTTGATTGGGTTGTAACGGTTGATTAAGGGTCATCTGGATTATGTGTAGCAACTTCTTGATCTATTTTTCTGGTTCGTTAAGGGTTGGTTTCAGGAAAGTTTCAGATCTCCGCATTTATTTGTACCTTATCCTGCGATTTAGGGTTTTGTTTCAATTGAATATATGTTAGTGTGAATTGGTATACCAATGGCCTTACAGTTGGTTTAACTGGATTCCTCTCATCCTAAACTCTTTCAAATTTTGTCATGGTCAATGACTGAAGGTATCATTGGTCATTCCAATAGGATGTGGCTAGCCCACTAAATTTGGAAGGAAGATGTTCTTGTGGTATGAATTGAAATCCATTGGTATGTTTTGGAAAGCTGTAGAGGAACTGTTGTGACCATGCAAGTAAGATTTGGAGTGGATCTCTGAATTATCAGAAATGTAGGATGGGTGGTGTTGTCTAATCTGGTTTTTGGATTCTTCAATTTCTGTGGGGTTTTTTTTTATGACGATTTATTTTTCCTGTGAACTTATCGCTGTGGTCATGCTGATCCCTCAGGTGTCATTCAACTGAAGAATTCTGTATATTGGCATGGGTTGATTATGCTGTGTGATTATTTTGACTCTAGCTTGTACGTGTTGTTCATTTAACATTGGTTTATTGGTGGACTTCCTTCCTCATTTTCTGGACTGCACGCTGGCTTTTTGGTTTCTTCAAGGCTTGTGGTTTTGGGTGTAATGTTGTCGTTGGGTTCATGGAAAATTGGAAATAGATCATTTATAGGCAATATATGTGGGTTTTGCGTGCACTAACACTGCACGTGTGGAAAACAGGACATTCATTGCAAGTAGCCATGGTTTTATCTTATTTGCTTCTCTTAAAATTTCTCATGATATGGGTGGTAACATATTGAACCTACACGGGCAGTTATCATCAGAGCTTTCTCTCCTGTCTGCATCTTTGCACTTTCTTTTGCTCTGTTCGCAGAGAGGAGATGAGATGCCAACAATGAATGACAATGGTTGTCAATTTTTTTGGTTGGTCCTTTTGCAGTTGTATCAGGGAAAAGTCTTTGGAGATATATGGTTGTTATACTTGGAATGATTTTCCTATTAATTTTCTTAATATCTTATGAACCCACTGCCTTCTTCATTTCAGGATATAGAATACATGCAGGTTCAGTTTCTCCACCACGCCGTCGGGATGTTCATCGATACGTTTCTAATTTTGATCATTCTGAGGGTCTCACACGAGGTCGTGAATTTGGTGGTGGGAGGGATCTTGATAGATATCGTGATACTTCACCTCACTATGGTCGAAGAGTAAGTGGTGGTAGGCCATTTGGGAGAGGTGTGGATGGCCCTAGACTTGCTCCTGGGCCATTTCGAGGGGAACGCAGTAAAAATAATCCAAATGTGCGTCCTAGGGATGGGGATTGGTATTGCTCAGATCCTTTGTAAGTACTACTAACCTAGCACCGCACTTTCGTATATATATAAAAAAGGATTTACTTCTGTGTTCAGTACATACAGATAAAAACTAGTTGGTAAGCATGCCATTACACCTTTTAGTAATTTGAAGGGAATTTTATCCTTTGCATAGAATAGGATCATTTATCTTAATATGCCTTTTGGGTTGGTTATTTGTTATTATTATTAGTATTATTTGAGTGCCTGATTCCCTCAGGTATGTGTTTCATGTTTTCTAATGTGTTGGGCATTGCCGCTCTTATTATTTTCTAATAATCAAAAGAATACAAAGAGGGAATAATATATAGGCTATAATAAGCCCGAACAATAAAGGCAAAAAACTAGGGTCTAATAAATTACACAAATACCCTTGGGGCTATACACTTCTCTAGTCCCTCATTTCCAACAAATTTTAATTTAAACAATTGTTTAAAGTATGTTTTATAATACGTGAAACTAATTGTAGTGACCCACTAAAGTTCACAATAAATTTTTATTAATTTACTTATGAATATGATTTGCTAAAAAAGTATATAATTATTATTTTATAATATTATATAATTTGTAATACATTGTGTATGTTACATTTTTTAAAAAATAATTTGAGTTTATAACCTGACATTTTGTACTTAATATAATTTTGCATTTTCAAATTTAAAATTCAAAATTAGGATACAATAAAAACATAGAAAGGGAGTTTCCAAAATTTGCATGATTTGGATCACAAAGTCCAAAAACAGTTTTAAAAAACAGAATCTGGGTTGTCTGCCAAACACAAGATTGTCAAGGAATTTGAAAACATCAAACAAAATTTGGATTTTTTACTAAATGGGTCCTTATTTTGTCATTATGTTTTTAAAAATTAATTTTGAGGCTGCCTGTCTCAAAAGTACTTTTTTCATGTATATTTGCATATGGATTTTTTTAGAAAAAGAAGCATATTGTTTTAATGTAATTGGCTGTGTGATTGGACTCAATGAAAAATGTCACCTCAGAGGTGTGCCAAATCTTGTAAGTGAATGATGTTCCAGTTTCTTCCTCATTTGGCATGTGGTACAATGAAGAATTTTTACTTTAATGCATAGCTCGGTGTACATTTTTCATTGCATTCCTTCAAGGTGTTTTTCTTTTTTCAAACTAATTGCATTTTTATTTTTTATTAGATGTGACAACCTAAACTTTGCAAGACGAGAATTCTGTAACAACTGCAACAGACCTCGCACTGGAGGTGGTGGAAGTCCTCGAAGAGGCTATGCTGGTCCACCATCCCTGCATTCTCCTCCTAGACGTTTCGCTGCCCACCCAATTGAACGTTCTCCTGGCAGGACTCTTAATGAATATAGGTCTCCTCCCCGTAGCTGGGCGAGGGATGGTTCTAGGGAGATGGCAGCTGGTGGCCTGGCACCTCCAAGGTATGAAAGCAGGTATTCCGATCACCTGCGGAGAGATAGGGTGGACTATCTCGAAGACAGCTTCAGAGGAAGATCCAAGTTCGATAGACCACTTCCTTCAGCAGATTGGGCCCTTAGAGACAATGGAAGGGATGACTTCATCACAGAGAGGAAGGGATTCGAAAGAAGGCCACCATCCCCACCACTGCCGTTGCTTCCTCAGCGTGGACGCTGGTCGCGTGATGTTAGAGATCGGAGCCGTTCTCCCATCAGAGGTCCAATCAGATCTCCACTAAGAGTCCCACTACGGTCTCCATTAAGTAGTGGCCTTCCACCAAAAGACTTCCGTAGAGATGTTTTCGGCGAAAGGGAGCGCGATGATAGGCGTGGCCTAGGACGAGATCGTGAGGGAGGTCCATTTTAGTGTTGAAACTTGGTTACCCATGTAATTTTTTGGTTAGAACATAATGGGCAACCTGTAATATGTGTTTAGAGCTGTGGAAAGAGGATGGTAAGAAGAGGGTACATGATTATTCTTGACTGGTCTGGTGTGTGGAAACTTGCTGATGGGGCGTTTTATCTGTTGCTCGTGTGGTTTTCGTGTTTTTACCATTTTATGGTGTAGTTAGCAGCCAAGCAGAAATAGTTGAGTAAATGCTTTAAAATACAGTATCTGTCAACTTCATTTGCCATCTTTGGTTTATATTGGCTTATGGGCAATGGTTTTGA

mRNA sequence

ATGGTTGTTATACTTGGAATGATTTTCCTATTAATTTTCTTAATATCTTATGAACCCACTGCCTTCTTCATTTCAGGATATAGAATACATGCAGGTTCAGTTTCTCCACCACGCCGTCGGGATGTTCATCGATACGTTTCTAATTTTGATCATTCTGAGGGTCTCACACGAGGTCGTGAATTTGGTGGTGGGAGGGATCTTGATAGATATCGTGATACTTCACCTCACTATGGTCGAAGAGTAAGTGGTGGTAGGCCATTTGGGAGAGGTGTGGATGGCCCTAGACTTGCTCCTGGGCCATTTCGAGGGGAACGCAGTAAAAATAATCCAAATGTGCGTCCTAGGGATGGGGATTGGTATTGCTCAGATCCTTTATGTGACAACCTAAACTTTGCAAGACGAGAATTCTGTAACAACTGCAACAGACCTCGCACTGGAGGTGGTGGAAGTCCTCGAAGAGGCTATGCTGGTCCACCATCCCTGCATTCTCCTCCTAGACGTTTCGCTGCCCACCCAATTGAACGTTCTCCTGGCAGGACTCTTAATGAATATAGGTCTCCTCCCCGTAGCTGGGCGAGGGATGGTTCTAGGGAGATGGCAGCTGGTGGCCTGGCACCTCCAAGGTATGAAAGCAGGTATTCCGATCACCTGCGGAGAGATAGGGTGGACTATCTCGAAGACAGCTTCAGAGGAAGATCCAAGTTCGATAGACCACTTCCTTCAGCAGATTGGGCCCTTAGAGACAATGGAAGGGATGACTTCATCACAGAGAGGAAGGGATTCGAAAGAAGGCCACCATCCCCACCACTGCCGTTGCTTCCTCAGCGTGGACGCTGGTCGCGTGATGTTAGAGATCGGAGCCGTTCTCCCATCAGAGGTCCAATCAGATCTCCACTAAGAGTCCCACTACGGTCTCCATTAAGTAGTGGCCTTCCACCAAAAGACTTCCGTAGAGATGTTTTCGGCGAAAGGGAGCGCGATGATAGGCGTGGCCTAGGACGAGATCGTGAGGGAGGTCCATTTTAG

Coding sequence (CDS)

ATGGTTGTTATACTTGGAATGATTTTCCTATTAATTTTCTTAATATCTTATGAACCCACTGCCTTCTTCATTTCAGGATATAGAATACATGCAGGTTCAGTTTCTCCACCACGCCGTCGGGATGTTCATCGATACGTTTCTAATTTTGATCATTCTGAGGGTCTCACACGAGGTCGTGAATTTGGTGGTGGGAGGGATCTTGATAGATATCGTGATACTTCACCTCACTATGGTCGAAGAGTAAGTGGTGGTAGGCCATTTGGGAGAGGTGTGGATGGCCCTAGACTTGCTCCTGGGCCATTTCGAGGGGAACGCAGTAAAAATAATCCAAATGTGCGTCCTAGGGATGGGGATTGGTATTGCTCAGATCCTTTATGTGACAACCTAAACTTTGCAAGACGAGAATTCTGTAACAACTGCAACAGACCTCGCACTGGAGGTGGTGGAAGTCCTCGAAGAGGCTATGCTGGTCCACCATCCCTGCATTCTCCTCCTAGACGTTTCGCTGCCCACCCAATTGAACGTTCTCCTGGCAGGACTCTTAATGAATATAGGTCTCCTCCCCGTAGCTGGGCGAGGGATGGTTCTAGGGAGATGGCAGCTGGTGGCCTGGCACCTCCAAGGTATGAAAGCAGGTATTCCGATCACCTGCGGAGAGATAGGGTGGACTATCTCGAAGACAGCTTCAGAGGAAGATCCAAGTTCGATAGACCACTTCCTTCAGCAGATTGGGCCCTTAGAGACAATGGAAGGGATGACTTCATCACAGAGAGGAAGGGATTCGAAAGAAGGCCACCATCCCCACCACTGCCGTTGCTTCCTCAGCGTGGACGCTGGTCGCGTGATGTTAGAGATCGGAGCCGTTCTCCCATCAGAGGTCCAATCAGATCTCCACTAAGAGTCCCACTACGGTCTCCATTAAGTAGTGGCCTTCCACCAAAAGACTTCCGTAGAGATGTTTTCGGCGAAAGGGAGCGCGATGATAGGCGTGGCCTAGGACGAGATCGTGAGGGAGGTCCATTTTAG

Protein sequence

MVVILGMIFLLIFLISYEPTAFFISGYRIHAGSVSPPRRRDVHRYVSNFDHSEGLTRGREFGGGRDLDRYRDTSPHYGRRVSGGRPFGRGVDGPRLAPGPFRGERSKNNPNVRPRDGDWYCSDPLCDNLNFARREFCNNCNRPRTGGGGSPRRGYAGPPSLHSPPRRFAAHPIERSPGRTLNEYRSPPRSWARDGSREMAAGGLAPPRYESRYSDHLRRDRVDYLEDSFRGRSKFDRPLPSADWALRDNGRDDFITERKGFERRPPSPPLPLLPQRGRWSRDVRDRSRSPIRGPIRSPLRVPLRSPLSSGLPPKDFRRDVFGERERDDRRGLGRDREGGPF*

Homology

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BLAST of Csa1G696450 vs. Swiss-Prot
Match: RBP56_HUMAN (TATA-binding protein-associated factor 2N OS=Homo sapiens GN=TAF15 PE=1 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 7.7e-10
Identity = 38/105 (36.19%), Postives = 43/105 (40.95%), Query Frame = 1


Query: 58  GREFGGGRDLDRYRDTSPHYGRRVSGGRPFGRGVDGPRLAPGPFRGERSKNNPNVRPRDG 117
           G+EF G      +    P + R        G G  G R   G +RG          P+ G
Sbjct: 305 GKEFHGNIIKVSFATRRPEFMR--------GGGSGGGRRGRGGYRGRGGFQGRGGDPKSG 364

Query: 118 DWYCSDPLCDNLNFARREFCNNCNRP-----RTGGGGSPRRGYAG 158
           DW C +P C N+NFARR  CN CN P     R  GG    RGY G
Sbjct: 365 DWVCPNPSCGNMNFARRNSCNQCNEPRPEDSRPSGGDFRGRGYGG 401

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BLAST of Csa1G696450 vs. Swiss-Prot
Match: TA15B_ARATH (Transcription initiation factor TFIID subunit 15b OS=Arabidopsis thaliana GN=TAF15B PE=1 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 1.8e-06
Identity = 54/164 (32.93%), Postives = 61/164 (37.20%), Query Frame = 1


Query: 53  EGLTRGREFGGGRDLDRYRDTSP--HYGRRVSGGRPFGRGVDGPRLAPGPFRGERSKNNP 112
           +G   G  +GGG      R  S    YG R   G   GRG  G     G   G+R     
Sbjct: 21  DGYGGGGGYGGGDAGYGGRGASGGGSYGGRGGYGGGGGRGNRGGG-GGGYQGGDRGGRGS 80

Query: 113 NVRPRDGDWYCSDPLCDNLNFARREFCNNCN--RPRTGGGGSPRRGYAGPPSLHSPPRRF 172
               RDGDW C +P C N+NFARR  CN C    P     G+  RG  G         R 
Sbjct: 81  GGGGRDGDWRCPNPSCGNVNFARRVECNKCGALAPSGTSSGANDRGGGGYSRGGGDSDRG 140

Query: 173 AAHPIERSPGRTL--NEYRSPPRSWARDGS---REMAAGGLAPP 208
                    GR+   + Y    RS    GS   RE  + G APP
Sbjct: 141 GGRGGRNDSGRSYESSRYDGGSRSGGSYGSGSQRENGSYGQAPP 183

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BLAST of Csa1G696450 vs. Swiss-Prot
Match: EWS_MOUSE (RNA-binding protein EWS OS=Mus musculus GN=Ewsr1 PE=1 SV=2)

HSP 1 Score: 53.9 bits (128), Expect = 4.0e-06
Identity = 36/86 (41.86%), Postives = 38/86 (44.19%), Query Frame = 1


Query: 84  GRPFGRGVDGPRLAPGPFRGERSKNNP----NVRPRDGDWYCSDPLCDNLNFARREFCNN 143
           GR  GRG D     P   RG  S+ NP    NV+ R GDW C +P C N NFA R  CN 
Sbjct: 484 GRMGGRGGDRGGFPPRGPRG--SRGNPSGGGNVQHRAGDWQCPNPGCGNQNFAWRTECNQ 543

Query: 144 CNRPRTGGGGSP-------RRGYAGP 159
           C  P+  G   P        RG  GP
Sbjct: 544 CKAPKPEGFLPPPFPPPGGDRGRGGP 567

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BLAST of Csa1G696450 vs. Swiss-Prot
Match: EWS_HUMAN (RNA-binding protein EWS OS=Homo sapiens GN=EWSR1 PE=1 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 4.0e-06
Identity = 36/86 (41.86%), Postives = 38/86 (44.19%), Query Frame = 1


Query: 84  GRPFGRGVDGPRLAPGPFRGERSKNNP----NVRPRDGDWYCSDPLCDNLNFARREFCNN 143
           GR  GRG D     P   RG  S+ NP    NV+ R GDW C +P C N NFA R  CN 
Sbjct: 485 GRMGGRGGDRGGFPPRGPRG--SRGNPSGGGNVQHRAGDWQCPNPGCGNQNFAWRTECNQ 544

Query: 144 CNRPRTGGGGSP-------RRGYAGP 159
           C  P+  G   P        RG  GP
Sbjct: 545 CKAPKPEGFLPPPFPPPGGDRGRGGP 568

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BLAST of Csa1G696450 vs. Swiss-Prot
Match: FUS_BOVIN (RNA-binding protein FUS OS=Bos taurus GN=FUS PE=2 SV=2)

HSP 1 Score: 52.8 bits (125), Expect = 8.9e-06
Identity = 37/108 (34.26%), Postives = 47/108 (43.52%), Query Frame = 1


Query: 115 RDGDWYCSDPLCDNLNFARREFCNNCNRPRTGG-GGSPRRGYAGPPSLHSPPRRFAAHPI 174
           R GDW C +P C+N+NF+ R  CN C  P+  G GG P   + G    +   RR      
Sbjct: 409 RAGDWKCPNPTCENMNFSWRNECNQCKAPKPDGPGGGPGGSHMG--GNYGDDRRGGRGGY 468

Query: 175 ERSPGRTLNEYRSPPRSWARDGSREMAAGGLAPPRYESRYSDHLRRDR 222
           +R   R     R   R   R G      GG  P + +SR  +H R+DR
Sbjct: 469 DRGGYRG----RGGDRGGFRGGRGGGDRGGFGPGKMDSR-GEH-RQDR 508

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BLAST of Csa1G696450 vs. TrEMBL
Match: A0A0A0M3K7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G696450 PE=4 SV=1)

HSP 1 Score: 725.3 bits (1871), Expect = 3.4e-206
Identity = 341/341 (100.00%), Postives = 341/341 (100.00%), Query Frame = 1


Query: 1   MVVILGMIFLLIFLISYEPTAFFISGYRIHAGSVSPPRRRDVHRYVSNFDHSEGLTRGRE 60
           MVVILGMIFLLIFLISYEPTAFFISGYRIHAGSVSPPRRRDVHRYVSNFDHSEGLTRGRE
Sbjct: 1   MVVILGMIFLLIFLISYEPTAFFISGYRIHAGSVSPPRRRDVHRYVSNFDHSEGLTRGRE 60

Query: 61  FGGGRDLDRYRDTSPHYGRRVSGGRPFGRGVDGPRLAPGPFRGERSKNNPNVRPRDGDWY 120
           FGGGRDLDRYRDTSPHYGRRVSGGRPFGRGVDGPRLAPGPFRGERSKNNPNVRPRDGDWY
Sbjct: 61  FGGGRDLDRYRDTSPHYGRRVSGGRPFGRGVDGPRLAPGPFRGERSKNNPNVRPRDGDWY 120

Query: 121 CSDPLCDNLNFARREFCNNCNRPRTGGGGSPRRGYAGPPSLHSPPRRFAAHPIERSPGRT 180
           CSDPLCDNLNFARREFCNNCNRPRTGGGGSPRRGYAGPPSLHSPPRRFAAHPIERSPGRT
Sbjct: 121 CSDPLCDNLNFARREFCNNCNRPRTGGGGSPRRGYAGPPSLHSPPRRFAAHPIERSPGRT 180

Query: 181 LNEYRSPPRSWARDGSREMAAGGLAPPRYESRYSDHLRRDRVDYLEDSFRGRSKFDRPLP 240
           LNEYRSPPRSWARDGSREMAAGGLAPPRYESRYSDHLRRDRVDYLEDSFRGRSKFDRPLP
Sbjct: 181 LNEYRSPPRSWARDGSREMAAGGLAPPRYESRYSDHLRRDRVDYLEDSFRGRSKFDRPLP 240

Query: 241 SADWALRDNGRDDFITERKGFERRPPSPPLPLLPQRGRWSRDVRDRSRSPIRGPIRSPLR 300
           SADWALRDNGRDDFITERKGFERRPPSPPLPLLPQRGRWSRDVRDRSRSPIRGPIRSPLR
Sbjct: 241 SADWALRDNGRDDFITERKGFERRPPSPPLPLLPQRGRWSRDVRDRSRSPIRGPIRSPLR 300

Query: 301 VPLRSPLSSGLPPKDFRRDVFGERERDDRRGLGRDREGGPF 342
           VPLRSPLSSGLPPKDFRRDVFGERERDDRRGLGRDREGGPF
Sbjct: 301 VPLRSPLSSGLPPKDFRRDVFGERERDDRRGLGRDREGGPF 341

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BLAST of Csa1G696450 vs. TrEMBL
Match: W9S109_9ROSA (TATA-binding protein-associated factor 2N OS=Morus notabilis GN=L484_001933 PE=4 SV=1)

HSP 1 Score: 409.1 bits (1050), Expect = 5.4e-111
Identity = 201/324 (62.04%), Postives = 229/324 (70.68%), Query Frame = 1


Query: 25  SGYRIHAGSVSPPRRRDV-HRYVSNFDHSEGLTRGREFGGGRDLDRYRDTSPHYGRRVSG 84
           SGYR+ AGS SP RRRD  HRY S+FDH   L R RE G  RD  R+RD SP Y R    
Sbjct: 63  SGYRLRAGSTSPVRRRDSDHRYNSDFDHLRSLARSREVGAARDAGRFRDYSPPYARGRGS 122

Query: 85  GRPFGRGVDGPRLAPGPFRGE-RSKNNPNVRPRDGDWYCSDPLCDNLNFARREFCNNCNR 144
           GRPFGRG DGP   PG FRGE  S+NNPNVRPR+GDWYC DPLC NLNFARR+ CNNC R
Sbjct: 123 GRPFGRGPDGPDFGPGLFRGEGMSRNNPNVRPREGDWYCPDPLCGNLNFARRDSCNNCKR 182

Query: 145 PRTGGGGSPRRGYAGPPSLHSPPRRFAAHPIERSPGRTLNEYRSPPRSWARDGSREMAAG 204
            R G  GSPRRGY GPP    PPRRF   P++ SPGRT+N YRSPPR W RDG +E  AG
Sbjct: 183 SRYGPVGSPRRGYPGPPLPDVPPRRFPGPPLDHSPGRTMNGYRSPPRPWVRDGPKEFGAG 242

Query: 205 GLAPPRYESRYSD-HLRRDRVDYLEDSFRGRSKFDRPLPSADWALRDNGRDDFITERKGF 264
           GL PPR++ RY D H+RRDR+DY +D +RGR+KFDRP+P  DW  RD GR+ FI +RK F
Sbjct: 243 GLPPPRHDGRYPDHHMRRDRLDYPDDHYRGRAKFDRPMP-LDWGHRDRGRESFINDRKPF 302

Query: 265 ERRPPS----PPLPLLPQRGRWSRDVRDRSRSPIRGPIRSPLRVPLRSPLSSGLPPKDFR 324
           ERRPPS    PP+PL P RGRW+RDVR+RSRSP+R                 G PPKD+R
Sbjct: 303 ERRPPSPLPPPPVPLPPNRGRWARDVRERSRSPLR----------------RGPPPKDYR 362

Query: 325 RDVFGERERDDRRGLGRDREGGPF 342
           RDV+ ER RDDRRG+GRDR GG +
Sbjct: 363 RDVYVERGRDDRRGMGRDRIGGTY 369

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BLAST of Csa1G696450 vs. TrEMBL
Match: A0A061GLL6_THECC (RNA-binding protein-related OS=Theobroma cacao GN=TCM_037850 PE=4 SV=1)

HSP 1 Score: 402.1 bits (1032), Expect = 6.6e-109
Identity = 197/322 (61.18%), Postives = 232/322 (72.05%), Query Frame = 1


Query: 26  GYRIHAGSVSPPRRRDV-HRYVSNFDHSEGLTRGREFGGGRDLDRYRDTSPHYGRRVSGG 85
           GYRI AGS SP RRRD  HRY SNFD S G +R R+FG GRD  RYRD+SP Y R   GG
Sbjct: 69  GYRIRAGSSSPVRRRDADHRYGSNFDRSGGPSRSRDFGNGRDPGRYRDSSPPYNRGPGGG 128

Query: 86  RPFGRGVDGPRLAPGPFRGE-RSKNNPNVRPRDGDWYCSDPLCDNLNFARREFCNNCNRP 145
           RP GRG DGP   PGPFRGE  ++NNPNVRPR+GDW C DPLC NLNFARRE+CNNC R 
Sbjct: 129 RPLGRGFDGPGYGPGPFRGEGMTRNNPNVRPREGDWVCPDPLCRNLNFARREYCNNCRRF 188

Query: 146 RTGGGGSPRRGYAGPPSLHSPPRRFAAHPIERS-PGRTLNEYRSPPRSWARDGSREMAAG 205
           R    GSPR GY GPP  H+PPRRF   P++ S PGR +N +RSPPR WAR+G RE  AG
Sbjct: 189 RYAPVGSPRGGYPGPPPSHAPPRRFPGSPMDLSPPGRNMNGFRSPPRGWAREGPREFGAG 248

Query: 206 GLAPPRYESRYSDH-LRRDRVDYLEDSFRGRSKFDRPLPSADWALRDNGRDDFITERKGF 265
           G  PPR+E R+SDH +RRDR+D+L+D +RGR++FDRP+P  DW  RD GR++F  ERKG+
Sbjct: 249 GPPPPRHEGRFSDHSMRRDRLDFLDDDYRGRNRFDRPMP-MDWGHRDRGRENFFNERKGY 308

Query: 266 ERRPPS--PPLPLLPQRGRWSRDVRDRSRSPIRGPIRSPLRVPLRSPLSSGLPPKDFRRD 325
           ERRPPS  PP P LP RGRW RDVR+RSRSP+RG                  PPK++RRD
Sbjct: 309 ERRPPSPPPPPPQLPPRGRWPRDVRERSRSPVRG----------------APPPKEYRRD 368

Query: 326 VFGERERDDRRGLGRDREGGPF 342
           ++ ER R+DRRG+GRDR G  +
Sbjct: 369 MYLERGREDRRGVGRDRMGDAY 373

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BLAST of Csa1G696450 vs. TrEMBL
Match: B9N7C3_POPTR (RNA-binding family protein OS=Populus trichocarpa GN=POPTR_0006s16360g PE=4 SV=1)

HSP 1 Score: 395.6 bits (1015), Expect = 6.2e-107
Identity = 195/316 (61.71%), Postives = 223/316 (70.57%), Query Frame = 1


Query: 26  GYRIHAGSVSPPRRRDV-HRYVSNFDHSEGLTRGREFGGGRDLDRYRDTSPHYGRRVSGG 85
           GYR+ AGS SP RRRD   RY S+FD+S    RGR+F  GRD  R+RD+SP Y R   GG
Sbjct: 30  GYRLRAGSGSPVRRRDADRRYSSDFDNSGAPPRGRDFSNGRDRGRFRDSSPPYARGRGGG 89

Query: 86  RPFGRGVDGPRLAPGPFRGER-SKNNPNVRPRDGDWYCSDPLCDNLNFARREFCNNCNRP 145
           RP GRG DGP   PGP RGE  S+NNPNVRPR+GDW CSDPLC NLNFARRE+CNNC RP
Sbjct: 90  RPLGRGFDGPGFGPGPLRGEGVSRNNPNVRPREGDWICSDPLCGNLNFARREYCNNCKRP 149

Query: 146 RTGGGGSPRRGYAGPPSLHSPPRRFAAHPIERSPGRTLNEYRSPPRSWARDGSREMAAGG 205
           R   GGSPRRGY GPP  H+PPRRF   P++ SPGRT+N YRSPPR W+RDG R+   GG
Sbjct: 150 RYRPGGSPRRGYPGPPPPHAPPRRFPGPPLDLSPGRTMNGYRSPPRGWSRDGPRDFGPGG 209

Query: 206 LAPPRYESRYSDH-LRRDRVDYLEDSFRGRSKFDRPLPSADWALRDNGRDDFITERKGFE 265
             PPR   R+SDH +RR+R DY +D +R R+KFDRP+P  DW  +D GRD    ERKGFE
Sbjct: 210 PPPPRQGGRFSDHDMRRERSDYPDDEYRVRNKFDRPMP-MDWGHKDRGRDGLFNERKGFE 269

Query: 266 RRPPSPPL--PLLPQRGRWSRDVRDRSRSPIRGPIRSPLRVPLRSPLSSGLPPKDFRRDV 325
           RRPPSPPL  P LPQRGRW RD RDRSRSPIRG                  PPK+FR+D+
Sbjct: 270 RRPPSPPLPPPSLPQRGRWGRDGRDRSRSPIRG----------------APPPKEFRQDM 328

Query: 326 FGERERDDRRGLGRDR 337
           + ER RDDR  +GRDR
Sbjct: 330 YMERGRDDRHPVGRDR 328

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BLAST of Csa1G696450 vs. TrEMBL
Match: F6HH13_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_11s0016g03670 PE=4 SV=1)

HSP 1 Score: 392.5 bits (1007), Expect = 5.2e-106
Identity = 196/319 (61.44%), Postives = 221/319 (69.28%), Query Frame = 1


Query: 26  GYRIHAGSVSPPRRRDV-HRYVSNFDHSEGLTRGREFGGGRDLDRYRDTSPHYGRRVSGG 85
           GYRI AGS SP RRR+  HRY S FDHS GL R R FG  RD  RYR+ SP YGR   GG
Sbjct: 102 GYRIRAGSSSPVRRRNPDHRYNSEFDHSGGLPRSRGFGSERDPGRYRNHSPPYGRGRGGG 161

Query: 86  RPFGRGVDGPRLAPGPFRGERSKNNPNVRPRDGDWYCSDPLCDNLNFARREFCNNCNRPR 145
           R FGRG+DGP   PGP R E  +NNPNVRPR+GDW C DPLC NLNFARRE CNNCNR R
Sbjct: 162 RSFGRGLDGPGFGPGPIRSEGIRNNPNVRPREGDWVCPDPLCGNLNFARREQCNNCNRYR 221

Query: 146 TGGGGSPRRGYAGPPSLHSPPRRFAAHPIERSPGRTLNEYRSPPRSWARDGSREMAAGGL 205
            G G SPRRG+ GPP  H PPRRF+  P++RSPGRT+N YRSPPR WARDG RE   G  
Sbjct: 222 EGPGESPRRGFPGPPPPHPPPRRFSGPPMDRSPGRTMNGYRSPPRGWARDGPREFGGGAP 281

Query: 206 APPRYESRYSDH-LRRDRVDYLEDSFRGRSKFDRPLPSADWALRDNGRDDFI-TERKGFE 265
           +  R++ R+ DH +RRDR+DY ED +R R+KFDRP P  DW  RD GRD F   ERKG+E
Sbjct: 282 SHRRHDGRFPDHNMRRDRLDYPEDDYRERNKFDRPAP-PDWGHRDRGRDSFFNNERKGYE 341

Query: 266 RRPPSPPLPLLPQRGRWSRDVRDRSRSPIRGPIRSPLRVPLRSPLSSGLPPKDFRRDVFG 325
           RRPPSPP P LP RGRW RDVR RSRSP+RG                G P KD+RRD++ 
Sbjct: 342 RRPPSPPPPPLPPRGRWGRDVRARSRSPVRG----------------GPPLKDYRRDMYM 401

Query: 326 ERERDDRRGLGRDREGGPF 342
            R RDDR G+ RDR G P+
Sbjct: 402 GRGRDDRHGIRRDRFGEPY 403

[Close]

BLAST of Csa1G696450 vs. TAIR10
Match: AT4G28990.2 (AT4G28990.2 RNA-binding protein-related)

HSP 1 Score: 179.5 bits (454), Expect = 3.5e-45
Identity = 128/326 (39.26%), Postives = 160/326 (49.08%), Query Frame = 1


Query: 26  GYRIHAGSVSPPRRR-DVHRYVSNFDHSEGLTRGREFGGGRDLD-RYRDTSPHYGRRVSG 85
           G+R  A S SP RR  + H++ S+ +HS    RGRE    R+   R+RD SP   R  +G
Sbjct: 112 GHRTRASSSSPGRRGYEDHKHGSDLNHSGVPPRGRELSSRREAPGRHRDYSPPLARGGAG 171

Query: 86  GRPFGRGVDGPRLAPGPFRGERSKNN-PNVRPRDGDWYCSDPLCDNLNFARREFCNNCNR 145
            RP+ RG+DGP    G  R   S+NN   V+PR+GDWYC DPLC NLNFARRE C  C R
Sbjct: 172 ARPYRRGLDGPEPPHG--RDGMSRNNISKVQPREGDWYCLDPLCRNLNFARRESCYKCKR 231

Query: 146 PRTGGGGSPRRGYAGPPSLHSPPRRFAAHPIERSPGRTLNEYRSPPRSWARDGSREMAAG 205
            R     SP            P  R    P+  SP R  N YRSPPR W RD        
Sbjct: 232 HRYAPANSP------------PLPRLLPPPMNHSPRRDFNGYRSPPRGWPRD-------- 291

Query: 206 GLAPPRYESRYSDHLRRDRVDYLEDSFRGRSKFDRPLPSADWALRDNGRDDFITERKGFE 265
              PPR++        RDR  Y +  +    +      ++DWA  +         +  ++
Sbjct: 292 -YPPPRHDHPTWRDRERDRPHYSDHEYPPSRRI-----ASDWAHTEP------LPKPHYD 351

Query: 266 RRPPSPPLPLLPQRGRWSRDVRDRSRSPIRGPIRSPLRVPLRS----PLSSGLPP--KDF 325
           RRPP  P    P+ GRW R +R+RSRSP   P+R     PLR      L  G PP  +D+
Sbjct: 352 RRPPLSP----PRGGRWGRVLRERSRSP---PLRDVPPPPLRDGPPPSLRGGGPPLHRDY 395

Query: 326 RRDVFGERE-RDDRRGLGRDREGGPF 342
           RRD   +RE RDD RG GR R G  +
Sbjct: 412 RRDSHFDRERRDDGRG-GRGRMGNSY 395

[Close]

BLAST of Csa1G696450 vs. TAIR10
Match: AT5G58470.1 (AT5G58470.1 TBP-associated factor 15B)

HSP 1 Score: 55.1 bits (131), Expect = 1.0e-07
Identity = 54/164 (32.93%), Postives = 61/164 (37.20%), Query Frame = 1


Query: 53  EGLTRGREFGGGRDLDRYRDTSP--HYGRRVSGGRPFGRGVDGPRLAPGPFRGERSKNNP 112
           +G   G  +GGG      R  S    YG R   G   GRG  G     G   G+R     
Sbjct: 21  DGYGGGGGYGGGDAGYGGRGASGGGSYGGRGGYGGGGGRGNRGGG-GGGYQGGDRGGRGS 80

Query: 113 NVRPRDGDWYCSDPLCDNLNFARREFCNNCN--RPRTGGGGSPRRGYAGPPSLHSPPRRF 172
               RDGDW C +P C N+NFARR  CN C    P     G+  RG  G         R 
Sbjct: 81  GGGGRDGDWRCPNPSCGNVNFARRVECNKCGALAPSGTSSGANDRGGGGYSRGGGDSDRG 140

Query: 173 AAHPIERSPGRTL--NEYRSPPRSWARDGS---REMAAGGLAPP 208
                    GR+   + Y    RS    GS   RE  + G APP
Sbjct: 141 GGRGGRNDSGRSYESSRYDGGSRSGGSYGSGSQRENGSYGQAPP 183

[Close]

BLAST of Csa1G696450 vs. NCBI nr
Match: gi|778664414|ref|XP_011660290.1| (PREDICTED: uncharacterized protein LOC101209122 isoform X3 [Cucumis sativus])

HSP 1 Score: 725.3 bits (1871), Expect = 4.9e-206
Identity = 341/341 (100.00%), Postives = 341/341 (100.00%), Query Frame = 1


Query: 1   MVVILGMIFLLIFLISYEPTAFFISGYRIHAGSVSPPRRRDVHRYVSNFDHSEGLTRGRE 60
           MVVILGMIFLLIFLISYEPTAFFISGYRIHAGSVSPPRRRDVHRYVSNFDHSEGLTRGRE
Sbjct: 1   MVVILGMIFLLIFLISYEPTAFFISGYRIHAGSVSPPRRRDVHRYVSNFDHSEGLTRGRE 60

Query: 61  FGGGRDLDRYRDTSPHYGRRVSGGRPFGRGVDGPRLAPGPFRGERSKNNPNVRPRDGDWY 120
           FGGGRDLDRYRDTSPHYGRRVSGGRPFGRGVDGPRLAPGPFRGERSKNNPNVRPRDGDWY
Sbjct: 61  FGGGRDLDRYRDTSPHYGRRVSGGRPFGRGVDGPRLAPGPFRGERSKNNPNVRPRDGDWY 120

Query: 121 CSDPLCDNLNFARREFCNNCNRPRTGGGGSPRRGYAGPPSLHSPPRRFAAHPIERSPGRT 180
           CSDPLCDNLNFARREFCNNCNRPRTGGGGSPRRGYAGPPSLHSPPRRFAAHPIERSPGRT
Sbjct: 121 CSDPLCDNLNFARREFCNNCNRPRTGGGGSPRRGYAGPPSLHSPPRRFAAHPIERSPGRT 180

Query: 181 LNEYRSPPRSWARDGSREMAAGGLAPPRYESRYSDHLRRDRVDYLEDSFRGRSKFDRPLP 240
           LNEYRSPPRSWARDGSREMAAGGLAPPRYESRYSDHLRRDRVDYLEDSFRGRSKFDRPLP
Sbjct: 181 LNEYRSPPRSWARDGSREMAAGGLAPPRYESRYSDHLRRDRVDYLEDSFRGRSKFDRPLP 240

Query: 241 SADWALRDNGRDDFITERKGFERRPPSPPLPLLPQRGRWSRDVRDRSRSPIRGPIRSPLR 300
           SADWALRDNGRDDFITERKGFERRPPSPPLPLLPQRGRWSRDVRDRSRSPIRGPIRSPLR
Sbjct: 241 SADWALRDNGRDDFITERKGFERRPPSPPLPLLPQRGRWSRDVRDRSRSPIRGPIRSPLR 300

Query: 301 VPLRSPLSSGLPPKDFRRDVFGERERDDRRGLGRDREGGPF 342
           VPLRSPLSSGLPPKDFRRDVFGERERDDRRGLGRDREGGPF
Sbjct: 301 VPLRSPLSSGLPPKDFRRDVFGERERDDRRGLGRDREGGPF 341

[Close]

BLAST of Csa1G696450 vs. NCBI nr
Match: gi|449449529|ref|XP_004142517.1| (PREDICTED: uncharacterized protein LOC101209122 isoform X2 [Cucumis sativus])

HSP 1 Score: 679.5 bits (1752), Expect = 3.1e-192
Identity = 316/317 (99.68%), Postives = 317/317 (100.00%), Query Frame = 1


Query: 25  SGYRIHAGSVSPPRRRDVHRYVSNFDHSEGLTRGREFGGGRDLDRYRDTSPHYGRRVSGG 84
           +GYRIHAGSVSPPRRRDVHRYVSNFDHSEGLTRGREFGGGRDLDRYRDTSPHYGRRVSGG
Sbjct: 49  AGYRIHAGSVSPPRRRDVHRYVSNFDHSEGLTRGREFGGGRDLDRYRDTSPHYGRRVSGG 108

Query: 85  RPFGRGVDGPRLAPGPFRGERSKNNPNVRPRDGDWYCSDPLCDNLNFARREFCNNCNRPR 144
           RPFGRGVDGPRLAPGPFRGERSKNNPNVRPRDGDWYCSDPLCDNLNFARREFCNNCNRPR
Sbjct: 109 RPFGRGVDGPRLAPGPFRGERSKNNPNVRPRDGDWYCSDPLCDNLNFARREFCNNCNRPR 168

Query: 145 TGGGGSPRRGYAGPPSLHSPPRRFAAHPIERSPGRTLNEYRSPPRSWARDGSREMAAGGL 204
           TGGGGSPRRGYAGPPSLHSPPRRFAAHPIERSPGRTLNEYRSPPRSWARDGSREMAAGGL
Sbjct: 169 TGGGGSPRRGYAGPPSLHSPPRRFAAHPIERSPGRTLNEYRSPPRSWARDGSREMAAGGL 228

Query: 205 APPRYESRYSDHLRRDRVDYLEDSFRGRSKFDRPLPSADWALRDNGRDDFITERKGFERR 264
           APPRYESRYSDHLRRDRVDYLEDSFRGRSKFDRPLPSADWALRDNGRDDFITERKGFERR
Sbjct: 229 APPRYESRYSDHLRRDRVDYLEDSFRGRSKFDRPLPSADWALRDNGRDDFITERKGFERR 288

Query: 265 PPSPPLPLLPQRGRWSRDVRDRSRSPIRGPIRSPLRVPLRSPLSSGLPPKDFRRDVFGER 324
           PPSPPLPLLPQRGRWSRDVRDRSRSPIRGPIRSPLRVPLRSPLSSGLPPKDFRRDVFGER
Sbjct: 289 PPSPPLPLLPQRGRWSRDVRDRSRSPIRGPIRSPLRVPLRSPLSSGLPPKDFRRDVFGER 348

Query: 325 ERDDRRGLGRDREGGPF 342
           ERDDRRGLGRDREGGPF
Sbjct: 349 ERDDRRGLGRDREGGPF 365

[Close]

BLAST of Csa1G696450 vs. NCBI nr
Match: gi|449449527|ref|XP_004142516.1| (PREDICTED: uncharacterized protein LOC101209122 isoform X1 [Cucumis sativus])

HSP 1 Score: 679.1 bits (1751), Expect = 4.0e-192
Identity = 316/316 (100.00%), Postives = 316/316 (100.00%), Query Frame = 1


Query: 26  GYRIHAGSVSPPRRRDVHRYVSNFDHSEGLTRGREFGGGRDLDRYRDTSPHYGRRVSGGR 85
           GYRIHAGSVSPPRRRDVHRYVSNFDHSEGLTRGREFGGGRDLDRYRDTSPHYGRRVSGGR
Sbjct: 70  GYRIHAGSVSPPRRRDVHRYVSNFDHSEGLTRGREFGGGRDLDRYRDTSPHYGRRVSGGR 129

Query: 86  PFGRGVDGPRLAPGPFRGERSKNNPNVRPRDGDWYCSDPLCDNLNFARREFCNNCNRPRT 145
           PFGRGVDGPRLAPGPFRGERSKNNPNVRPRDGDWYCSDPLCDNLNFARREFCNNCNRPRT
Sbjct: 130 PFGRGVDGPRLAPGPFRGERSKNNPNVRPRDGDWYCSDPLCDNLNFARREFCNNCNRPRT 189

Query: 146 GGGGSPRRGYAGPPSLHSPPRRFAAHPIERSPGRTLNEYRSPPRSWARDGSREMAAGGLA 205
           GGGGSPRRGYAGPPSLHSPPRRFAAHPIERSPGRTLNEYRSPPRSWARDGSREMAAGGLA
Sbjct: 190 GGGGSPRRGYAGPPSLHSPPRRFAAHPIERSPGRTLNEYRSPPRSWARDGSREMAAGGLA 249

Query: 206 PPRYESRYSDHLRRDRVDYLEDSFRGRSKFDRPLPSADWALRDNGRDDFITERKGFERRP 265
           PPRYESRYSDHLRRDRVDYLEDSFRGRSKFDRPLPSADWALRDNGRDDFITERKGFERRP
Sbjct: 250 PPRYESRYSDHLRRDRVDYLEDSFRGRSKFDRPLPSADWALRDNGRDDFITERKGFERRP 309

Query: 266 PSPPLPLLPQRGRWSRDVRDRSRSPIRGPIRSPLRVPLRSPLSSGLPPKDFRRDVFGERE 325
           PSPPLPLLPQRGRWSRDVRDRSRSPIRGPIRSPLRVPLRSPLSSGLPPKDFRRDVFGERE
Sbjct: 310 PSPPLPLLPQRGRWSRDVRDRSRSPIRGPIRSPLRVPLRSPLSSGLPPKDFRRDVFGERE 369

Query: 326 RDDRRGLGRDREGGPF 342
           RDDRRGLGRDREGGPF
Sbjct: 370 RDDRRGLGRDREGGPF 385

[Close]

BLAST of Csa1G696450 vs. NCBI nr
Match: gi|659125536|ref|XP_008462734.1| (PREDICTED: uncharacterized protein LOC103501026 isoform X2 [Cucumis melo])

HSP 1 Score: 666.8 bits (1719), Expect = 2.1e-188
Identity = 308/317 (97.16%), Postives = 314/317 (99.05%), Query Frame = 1


Query: 25  SGYRIHAGSVSPPRRRDVHRYVSNFDHSEGLTRGREFGGGRDLDRYRDTSPHYGRRVSGG 84
           +GYRIHAGSVSP RRRDVHRY+SNF+HS+GL RGREFGGGRDLDRYRDTSPHYGRRV GG
Sbjct: 49  AGYRIHAGSVSPARRRDVHRYISNFNHSDGLARGREFGGGRDLDRYRDTSPHYGRRVGGG 108

Query: 85  RPFGRGVDGPRLAPGPFRGERSKNNPNVRPRDGDWYCSDPLCDNLNFARREFCNNCNRPR 144
           RPFGRGVDGPRLAPGPFRGERSKNNPNVRPRDGDWYCSDPLCDNLNFARREFCNNCNRPR
Sbjct: 109 RPFGRGVDGPRLAPGPFRGERSKNNPNVRPRDGDWYCSDPLCDNLNFARREFCNNCNRPR 168

Query: 145 TGGGGSPRRGYAGPPSLHSPPRRFAAHPIERSPGRTLNEYRSPPRSWARDGSREMAAGGL 204
           TGGGGSPRRGYAGPPSLH+PPRRFAAHPIERSPGRTLNEYRSPPRSWARDGSREMAAGGL
Sbjct: 169 TGGGGSPRRGYAGPPSLHTPPRRFAAHPIERSPGRTLNEYRSPPRSWARDGSREMAAGGL 228

Query: 205 APPRYESRYSDHLRRDRVDYLEDSFRGRSKFDRPLPSADWALRDNGRDDFITERKGFERR 264
           APPRYESRYSDHLRRDRVDYLEDSFRGRSKFDRPLPSADWALRDNGRDDFITERKGFERR
Sbjct: 229 APPRYESRYSDHLRRDRVDYLEDSFRGRSKFDRPLPSADWALRDNGRDDFITERKGFERR 288

Query: 265 PPSPPLPLLPQRGRWSRDVRDRSRSPIRGPIRSPLRVPLRSPLSSGLPPKDFRRDVFGER 324
           PPSPPLPLLPQRGRWSRDVR+RSRSPIRGPIRSPLRVPLRSPLSSGLPPKDFRRDVFGER
Sbjct: 289 PPSPPLPLLPQRGRWSRDVRERSRSPIRGPIRSPLRVPLRSPLSSGLPPKDFRRDVFGER 348

Query: 325 ERDDRRGLGRDREGGPF 342
           ERDDRRGLGRDREGGPF
Sbjct: 349 ERDDRRGLGRDREGGPF 365

[Close]

BLAST of Csa1G696450 vs. NCBI nr
Match: gi|659125534|ref|XP_008462733.1| (PREDICTED: uncharacterized protein LOC103501026 isoform X1 [Cucumis melo])

HSP 1 Score: 666.4 bits (1718), Expect = 2.7e-188
Identity = 308/316 (97.47%), Postives = 313/316 (99.05%), Query Frame = 1


Query: 26  GYRIHAGSVSPPRRRDVHRYVSNFDHSEGLTRGREFGGGRDLDRYRDTSPHYGRRVSGGR 85
           GYRIHAGSVSP RRRDVHRY+SNF+HS+GL RGREFGGGRDLDRYRDTSPHYGRRV GGR
Sbjct: 70  GYRIHAGSVSPARRRDVHRYISNFNHSDGLARGREFGGGRDLDRYRDTSPHYGRRVGGGR 129

Query: 86  PFGRGVDGPRLAPGPFRGERSKNNPNVRPRDGDWYCSDPLCDNLNFARREFCNNCNRPRT 145
           PFGRGVDGPRLAPGPFRGERSKNNPNVRPRDGDWYCSDPLCDNLNFARREFCNNCNRPRT
Sbjct: 130 PFGRGVDGPRLAPGPFRGERSKNNPNVRPRDGDWYCSDPLCDNLNFARREFCNNCNRPRT 189

Query: 146 GGGGSPRRGYAGPPSLHSPPRRFAAHPIERSPGRTLNEYRSPPRSWARDGSREMAAGGLA 205
           GGGGSPRRGYAGPPSLH+PPRRFAAHPIERSPGRTLNEYRSPPRSWARDGSREMAAGGLA
Sbjct: 190 GGGGSPRRGYAGPPSLHTPPRRFAAHPIERSPGRTLNEYRSPPRSWARDGSREMAAGGLA 249

Query: 206 PPRYESRYSDHLRRDRVDYLEDSFRGRSKFDRPLPSADWALRDNGRDDFITERKGFERRP 265
           PPRYESRYSDHLRRDRVDYLEDSFRGRSKFDRPLPSADWALRDNGRDDFITERKGFERRP
Sbjct: 250 PPRYESRYSDHLRRDRVDYLEDSFRGRSKFDRPLPSADWALRDNGRDDFITERKGFERRP 309

Query: 266 PSPPLPLLPQRGRWSRDVRDRSRSPIRGPIRSPLRVPLRSPLSSGLPPKDFRRDVFGERE 325
           PSPPLPLLPQRGRWSRDVR+RSRSPIRGPIRSPLRVPLRSPLSSGLPPKDFRRDVFGERE
Sbjct: 310 PSPPLPLLPQRGRWSRDVRERSRSPIRGPIRSPLRVPLRSPLSSGLPPKDFRRDVFGERE 369

Query: 326 RDDRRGLGRDREGGPF 342
           RDDRRGLGRDREGGPF
Sbjct: 370 RDDRRGLGRDREGGPF 385

The following BLAST results are available for this feature:

BLAST of Csa1G696450 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RBP56_HUMAN	7.7e-10	36.19	TATA-binding protein-associated factor 2N OS=Homo sapiens GN=TAF15 PE=1 SV=1	[more]
TA15B_ARATH	1.8e-06	32.93	Transcription initiation factor TFIID subunit 15b OS=Arabidopsis thaliana GN=TAF...	[more]
EWS_MOUSE	4.0e-06	41.86	RNA-binding protein EWS OS=Mus musculus GN=Ewsr1 PE=1 SV=2	[more]
EWS_HUMAN	4.0e-06	41.86	RNA-binding protein EWS OS=Homo sapiens GN=EWSR1 PE=1 SV=1	[more]
FUS_BOVIN	8.9e-06	34.26	RNA-binding protein FUS OS=Bos taurus GN=FUS PE=2 SV=2	[more]

BLAST of Csa1G696450 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0M3K7_CUCSA	3.4e-206	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G696450 PE=4 SV=1	[more]
W9S109_9ROSA	5.4e-111	62.04	TATA-binding protein-associated factor 2N OS=Morus notabilis GN=L484_001933 PE=4...	[more]
A0A061GLL6_THECC	6.6e-109	61.18	RNA-binding protein-related OS=Theobroma cacao GN=TCM_037850 PE=4 SV=1	[more]
B9N7C3_POPTR	6.2e-107	61.71	RNA-binding family protein OS=Populus trichocarpa GN=POPTR_0006s16360g PE=4 SV=1	[more]
F6HH13_VITVI	5.2e-106	61.44	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_11s0016g03670 PE=4 SV=...	[more]

BLAST of Csa1G696450 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G28990.2	3.5e-45	39.26	RNA-binding protein-related	[more]
AT5G58470.1	1.0e-07	32.93	TBP-associated factor 15B	[more]

BLAST of Csa1G696450 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778664414\|ref\|XP_011660290.1\|	4.9e-206	100.00	PREDICTED: uncharacterized protein LOC101209122 isoform X3 [Cucumis sativus]	[more]
gi\|449449529\|ref\|XP_004142517.1\|	3.1e-192	99.68	PREDICTED: uncharacterized protein LOC101209122 isoform X2 [Cucumis sativus]	[more]
gi\|449449527\|ref\|XP_004142516.1\|	4.0e-192	100.00	PREDICTED: uncharacterized protein LOC101209122 isoform X1 [Cucumis sativus]	[more]
gi\|659125536\|ref\|XP_008462734.1\|	2.1e-188	97.16	PREDICTED: uncharacterized protein LOC103501026 isoform X2 [Cucumis melo]	[more]
gi\|659125534\|ref\|XP_008462733.1\|	2.7e-188	97.47	PREDICTED: uncharacterized protein LOC103501026 isoform X1 [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001876	Znf_RanBP2

Vocabulary: **Molecular Function**
Term	Definition
GO:0008270	zinc ion binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0003723	RNA binding

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
CU093310	cucumber EST collection version 3.0	transcribed_cluster
CU097702	cucumber EST collection version 3.0	transcribed_cluster
CU110431	cucumber EST collection version 3.0	transcribed_cluster
CU136606	cucumber EST collection version 3.0	transcribed_cluster
CU162076	cucumber EST collection version 3.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa1G696450.1	Csa1G696450.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
CU097702	CU097702	transcribed_cluster
CU093310	CU093310	transcribed_cluster
CU136606	CU136606	transcribed_cluster
CU110431	CU110431	transcribed_cluster
CU162076	CU162076	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001876	Zinc finger, RanBP2-type	GENE3D	G3DSA:4.10.1060.10		coord: 109..146 score: 4.1
IPR001876	Zinc finger, RanBP2-type	SMART	SM00547	zf_4	coord: 117..143 score: 8.
IPR001876	Zinc finger, RanBP2-type	PROSITE	PS01358	ZF_RANBP2_1	coord: 119..140 scor
IPR001876	Zinc finger, RanBP2-type	PROFILE	PS50199	ZF_RANBP2_2	coord: 115..146 score: 9
IPR001876	Zinc finger, RanBP2-type	unknown	SSF90209	Ran binding protein zinc finger-like	coord: 107..147 score: 9.02
None	No IPR available	PANTHER	PTHR23238	RNA BINDING PROTEIN	coord: 33..289 score: 1.7E-63coord: 306..341 score: 1.7

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa1G696450	Cla010661	Watermelon (97103) v1	cuwmB089
Csa1G696450	MELO3C024688	Melon (DHL92) v3.5.1	cumeB045
Csa1G696450	ClCG06G008760	Watermelon (Charleston Gray)	cuwcgB077
Csa1G696450	Lsi06G008560	Bottle gourd (USVL1VR-Ls)	culsiB080
Csa1G696450	MELO3C024688.2	Melon (DHL92) v3.6.1	cumedB037
Csa1G696450	Cla97C06G118510	Watermelon (97103) v2	cuwmbB075
Csa1G696450	Bhi02G000989	Wax gourd	cuwgoB116
Csa1G696450	CSPI01G33850	Wild cucumber (PI 183967)	cpicuB001
Csa1G696450	Cucsa.332370	Cucumber (Gy14) v1	cgycuB470
Csa1G696450	Cp4.1LG04g10230	Cucurbita pepo (Zucchini)	cpecuB660
Csa1G696450	CsGy1G032410	Cucumber (Gy14) v2	cgybcuB002
Csa1G696450	Carg12208	Silver-seed gourd	carcuB0036

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa1G696450	Watermelon (97103) v2	cuwmbB082
Csa1G696450	Cucurbita moschata (Rifu)	cmocuB084
Csa1G696450	Watermelon (Charleston Gray)	cuwcgB085