Csa1G690220 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa1G690220
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Retrotransposon protein
Location	Chr1 : 27669250 .. 27669453 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCATGTTGTCTACTGCATAATCTAATAAATCGAGAGATAACGAACGTCAAAATTCTTAAAGACGTCGATGAGGTTGACTTGAACTACGCAACGACTGAAGGTAACAACATAAACTACAATGAGGCCTCAAACAAATGGAGTCAATGGAGGGATGACCTCGTCGAGGCGATGTTCAATGGATGGCAGTTGTGTAATCACTAG

mRNA sequence

ATGGCATGTTGTCTACTGCATAATCTAATAAATCGAGAGATAACGAACGTCAAAATTCTTAAAGACGTCGATGAGGTTGACTTGAACTACGCAACGACTGAAGGTAACAACATAAACTACAATGAGGCCTCAAACAAATGGAGTCAATGGAGGGATGACCTCGTCGAGGCGATGTTCAATGGATGGCAGTTGTGTAATCACTAG

Coding sequence (CDS)

ATGGCATGTTGTCTACTGCATAATCTAATAAATCGAGAGATAACGAACGTCAAAATTCTTAAAGACGTCGATGAGGTTGACTTGAACTACGCAACGACTGAAGGTAACAACATAAACTACAATGAGGCCTCAAACAAATGGAGTCAATGGAGGGATGACCTCGTCGAGGCGATGTTCAATGGATGGCAGTTGTGTAATCACTAG

Protein sequence

MACCLLHNLINREITNVKILKDVDEVDLNYATTEGNNINYNEASNKWSQWRDDLVEAMFNGWQLCNH*

Homology

[Close]

BLAST of Csa1G690220 vs. TrEMBL
Match: A0A0A0M0G4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G690220 PE=4 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 3.4e-33
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 1


Query: 1  MACCLLHNLINREITNVKILKDVDEVDLNYATTEGNNINYNEASNKWSQWRDDLVEAMFN 60
          MACCLLHNLINREITNVKILKDVDEVDLNYATTEGNNINYNEASNKWSQWRDDLVEAMFN
Sbjct: 1  MACCLLHNLINREITNVKILKDVDEVDLNYATTEGNNINYNEASNKWSQWRDDLVEAMFN 60

Query: 61 GWQLCNH 68
          GWQLCNH
Sbjct: 61 GWQLCNH 67

[Close]

BLAST of Csa1G690220 vs. TrEMBL
Match: E5GCB5_CUCME (Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 8.8e-13
Identity = 35/56 (62.50%), Postives = 45/56 (80.36%), Query Frame = 1


Query: 1   MACCLLHNLINREITNVKILKDVDEVDLNYATTEGNNINYNEASNKWSQWRDDLVE 57
           +ACCLLHNLINRE+TN  I  ++DEVD  +ATT  ++I+Y E SN+WSQWRD+L E
Sbjct: 298 LACCLLHNLINREMTNFDIEDNIDEVDSTHATTAADDIHYIETSNEWSQWRDNLAE 353

[Close]

BLAST of Csa1G690220 vs. TrEMBL
Match: E5GBB2_CUCME (Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 1.3e-11
Identity = 36/64 (56.25%), Postives = 45/64 (70.31%), Query Frame = 1


Query: 1   MACCLLHNLINREITNVKILKDVDEVDLNYATTEGN-NINYNEASNKWSQWRDDLVEAMF 60
           +AC LLHNLINRE+T    ++D DE D  YATT  + +I Y E +N+WSQWRDDL  +MF
Sbjct: 270 LACTLLHNLINREMTYCNDVEDEDEGDSTYATTTASEDIQYIETTNEWSQWRDDLATSMF 329

Query: 61  NGWQ 64
             WQ
Sbjct: 330 TDWQ 333

[Close]

BLAST of Csa1G690220 vs. TrEMBL
Match: M5WVS8_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppb016409mg PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 1.9e-07
Identity = 28/62 (45.16%), Postives = 39/62 (62.90%), Query Frame = 1


Query: 2   ACCLLHNLINREITNVKILKDVDEVDLNYATTEGNNINYNEASNKWSQWRDDLVEAMFNG 61
           ACCLLHNLI RE++   +   V+E++      EG+ I   E SNKW+ WRDDL   ++N 
Sbjct: 101 ACCLLHNLIQREMSMDPMEPQVNEINEAKNMVEGDTIGIVETSNKWTAWRDDLALQLYNE 160

Query: 62  WQ 64
           W+
Sbjct: 161 WR 162

[Close]

BLAST of Csa1G690220 vs. TrEMBL
Match: M5X5X1_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppb021413mg PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 1.2e-06
Identity = 25/62 (40.32%), Postives = 40/62 (64.52%), Query Frame = 1


Query: 2   ACCLLHNLINREITNVKILKDVDEVDLNYATTEGNNINYNEASNKWSQWRDDLVEAMFNG 61
           ACCLLHNLI RE++   +  +++E++      EG+ +    AS++W+ WR+DL   M+N 
Sbjct: 298 ACCLLHNLIRREMSRDPLEHEINEIEETENVIEGDMVGTIGASDEWTTWRNDLAFQMYNE 357

Query: 62  WQ 64
           WQ
Sbjct: 358 WQ 359

[Close]

BLAST of Csa1G690220 vs. NCBI nr
Match: gi|700211688|gb|KGN66784.1| (hypothetical protein Csa_1G690220 [Cucumis sativus])

HSP 1 Score: 148.3 bits (373), Expect = 4.9e-33
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 1


Query: 1  MACCLLHNLINREITNVKILKDVDEVDLNYATTEGNNINYNEASNKWSQWRDDLVEAMFN 60
          MACCLLHNLINREITNVKILKDVDEVDLNYATTEGNNINYNEASNKWSQWRDDLVEAMFN
Sbjct: 1  MACCLLHNLINREITNVKILKDVDEVDLNYATTEGNNINYNEASNKWSQWRDDLVEAMFN 60

Query: 61 GWQLCNH 68
          GWQLCNH
Sbjct: 61 GWQLCNH 67

[Close]

BLAST of Csa1G690220 vs. NCBI nr
Match: gi|659114872|ref|XP_008457266.1| (PREDICTED: putative nuclease HARBI1 [Cucumis melo])

HSP 1 Score: 89.4 bits (220), Expect = 2.7e-15
Identity = 39/66 (59.09%), Postives = 50/66 (75.76%), Query Frame = 1


Query: 1   MACCLLHNLINREITNVKILKDVDEVDLNYATTEGNNINYNEASNKWSQWRDDLVEAMFN 60
           + CCLLHNLINRE+TN  I  ++DEVD  +AT   ++I+Y E SN+WSQWRDDL E MF+
Sbjct: 238 LTCCLLHNLINREMTNFDIQDNIDEVDSTHATIATDDIHYIETSNEWSQWRDDLAEEMFS 297

Query: 61  GWQLCN 67
            W+L N
Sbjct: 298 EWELRN 303

[Close]

BLAST of Csa1G690220 vs. NCBI nr
Match: gi|659082639|ref|XP_008441953.1| (PREDICTED: uncharacterized protein LOC103485952 [Cucumis melo])

HSP 1 Score: 89.0 bits (219), Expect = 3.5e-15
Identity = 40/64 (62.50%), Postives = 49/64 (76.56%), Query Frame = 1


Query: 1   MACCLLHNLINREITNVKILKDVDEVDLNYATTEGNNINYNEASNKWSQWRDDLVEAMFN 60
           MACCLLHNLI RE+TN +I+ D+DE D  YATT G+ INY EASN+WS+ RD L   MF+
Sbjct: 182 MACCLLHNLIKREMTNNEIIDDLDEGDSTYATTGGDEINYIEASNEWSELRDQLAHTMFS 241

Query: 61  GWQL 65
            W+L
Sbjct: 242 DWEL 245

[Close]

BLAST of Csa1G690220 vs. NCBI nr
Match: gi|659112451|ref|XP_008456228.1| (PREDICTED: uncharacterized protein LOC103496233 [Cucumis melo])

HSP 1 Score: 87.4 bits (215), Expect = 1.0e-14
Identity = 36/66 (54.55%), Postives = 51/66 (77.27%), Query Frame = 1


Query: 1   MACCLLHNLINREITNVKILKDVDEVDLNYATTEGNNINYNEASNKWSQWRDDLVEAMFN 60
           + CCLLHNLINRE+T   I+ D+DEVD  +AT+  ++I+Y E SN+W++WRDDL + MF+
Sbjct: 139 LTCCLLHNLINREMTTFDIVDDIDEVDSTHATSAADDIHYIETSNEWTRWRDDLAKEMFS 198

Query: 61  GWQLCN 67
            W+L N
Sbjct: 199 EWELRN 204

[Close]

BLAST of Csa1G690220 vs. NCBI nr
Match: gi|659133321|ref|XP_008466673.1| (PREDICTED: uncharacterized protein LOC103504027 [Cucumis melo])

HSP 1 Score: 87.4 bits (215), Expect = 1.0e-14
Identity = 38/64 (59.38%), Postives = 48/64 (75.00%), Query Frame = 1


Query: 1   MACCLLHNLINREITNVKILKDVDEVDLNYATTEGNNINYNEASNKWSQWRDDLVEAMFN 60
           M CCLLHNLINRE+TN +I+ ++DE D  YATT G+ INY  ASN+WS+ RD L   MF+
Sbjct: 197 MVCCLLHNLINREMTNSEIINNLDEGDATYATTRGDEINYIAASNEWSELRDQLAHTMFS 256

Query: 61  GWQL 65
            W+L
Sbjct: 257 DWEL 260

The following BLAST results are available for this feature:

BLAST of Csa1G690220 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0M0G4_CUCSA	3.4e-33	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G690220 PE=4 SV=1	[more]
E5GCB5_CUCME	8.8e-13	62.50	Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1	[more]
E5GBB2_CUCME	1.3e-11	56.25	Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1	[more]
M5WVS8_PRUPE	1.9e-07	45.16	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppb016409mg PE=4 SV=1	[more]
M5X5X1_PRUPE	1.2e-06	40.32	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppb021413mg PE=4 SV=1	[more]

BLAST of Csa1G690220 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700211688\|gb\|KGN66784.1\|	4.9e-33	100.00	hypothetical protein Csa_1G690220 [Cucumis sativus]	[more]
gi\|659114872\|ref\|XP_008457266.1\|	2.7e-15	59.09	PREDICTED: putative nuclease HARBI1 [Cucumis melo]	[more]
gi\|659082639\|ref\|XP_008441953.1\|	3.5e-15	62.50	PREDICTED: uncharacterized protein LOC103485952 [Cucumis melo]	[more]
gi\|659112451\|ref\|XP_008456228.1\|	1.0e-14	54.55	PREDICTED: uncharacterized protein LOC103496233 [Cucumis melo]	[more]
gi\|659133321\|ref\|XP_008466673.1\|	1.0e-14	59.38	PREDICTED: uncharacterized protein LOC103504027 [Cucumis melo]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa1G690220.1	Csa1G690220.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa1G690220	Melon (DHL92) v3.5.1	cumeB045
Csa1G690220	Watermelon (Charleston Gray)	cuwcgB085
Csa1G690220	Cucurbita pepo (Zucchini)	cpecuB639
Csa1G690220	Cucurbita pepo (Zucchini)	cpecuB701
Csa1G690220	Bottle gourd (USVL1VR-Ls)	culsiB058
Csa1G690220	Cucumber (Gy14) v2	cgybcuB002
Csa1G690220	Melon (DHL92) v3.6.1	cumedB037
Csa1G690220	Silver-seed gourd	carcuB0927
Csa1G690220	Watermelon (97103) v2	cuwmbB077
Csa1G690220	Watermelon (97103) v2	cuwmbB082
Csa1G690220	Wax gourd	cuwgoB113
Csa1G690220	Watermelon (97103) v1	cuwmB091
Csa1G690220	Cucumber (Gy14) v1	cgycuB417
Csa1G690220	Cucumber (Gy14) v1	cgycuB418
Csa1G690220	Cucurbita maxima (Rimu)	cmacuB064
Csa1G690220	Cucurbita maxima (Rimu)	cmacuB085
Csa1G690220	Cucurbita moschata (Rifu)	cmocuB075
Csa1G690220	Cucurbita moschata (Rifu)	cmocuB054