Csa1G690170 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa1G690170
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr1 : 27611518 .. 27611712 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTAGTTGGGGCTGTTCAACGCACAAGGCACAAAATAACGCATGGCAAGCGACACGAAGCATATGTCTGTGCCATGCAGCTTGCTTGGTGCAAGATGCACATATTGTTTGAGGTGCACGATCAAGATGAGCACAATGTGTCCCTTGCAAGGTTAGCACGTGGCGAGCTCCGCCCAAGTCCTATGTCGCGCTAA

mRNA sequence

ATGTTAGTTGGGGCTGTTCAACGCACAAGGCACAAAATAACGCATGGCAAGCGACACGAAGCATATGTCTGTGCCATGCAGCTTGCTTGGTGCAAGATGCACATATTGTTTGAGGTGCACGATCAAGATGAGCACAATGTGTCCCTTGCAAGGTTAGCACGTGGCGAGCTCCGCCCAAGTCCTATGTCGCGCTAA

Coding sequence (CDS)

ATGTTAGTTGGGGCTGTTCAACGCACAAGGCACAAAATAACGCATGGCAAGCGACACGAAGCATATGTCTGTGCCATGCAGCTTGCTTGGTGCAAGATGCACATATTGTTTGAGGTGCACGATCAAGATGAGCACAATGTGTCCCTTGCAAGGTTAGCACGTGGCGAGCTCCGCCCAAGTCCTATGTCGCGCTAA

Protein sequence

MLVGAVQRTRHKITHGKRHEAYVCAMQLAWCKMHILFEVHDQDEHNVSLARLARGELRPSPMSR*
Homology
[Close]
BLAST of Csa1G690170 vs. TrEMBL
Match: A0A0A0LYB4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G690170 PE=4 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 9.9e-30
Identity = 64/64 (100.00%), Postives = 64/64 (100.00%), Query Frame = 1 

Query: 1  MLVGAVQRTRHKITHGKRHEAYVCAMQLAWCKMHILFEVHDQDEHNVSLARLARGELRPS 60
          MLVGAVQRTRHKITHGKRHEAYVCAMQLAWCKMHILFEVHDQDEHNVSLARLARGELRPS
Sbjct: 1  MLVGAVQRTRHKITHGKRHEAYVCAMQLAWCKMHILFEVHDQDEHNVSLARLARGELRPS 60

Query: 61 PMSR 65
          PMSR
Sbjct: 61 PMSR 64

[Close]
BLAST of Csa1G690170 vs. NCBI nr
Match: gi|700211682|gb|KGN66778.1| (hypothetical protein Csa_1G690170 [Cucumis sativus])

HSP 1 Score: 136.7 bits (343), Expect = 1.4e-29
Identity = 64/64 (100.00%), Postives = 64/64 (100.00%), Query Frame = 1 

Query: 1  MLVGAVQRTRHKITHGKRHEAYVCAMQLAWCKMHILFEVHDQDEHNVSLARLARGELRPS 60
          MLVGAVQRTRHKITHGKRHEAYVCAMQLAWCKMHILFEVHDQDEHNVSLARLARGELRPS
Sbjct: 1  MLVGAVQRTRHKITHGKRHEAYVCAMQLAWCKMHILFEVHDQDEHNVSLARLARGELRPS 60

Query: 61 PMSR 65
          PMSR
Sbjct: 61 PMSR 64

The following BLAST results are available for this feature:
BLAST of Csa1G690170 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LYB4_CUCSA9.9e-30100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G690170 PE=4 SV=1[more]
BLAST of Csa1G690170 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700211682|gb|KGN66778.1|1.4e-29100.00hypothetical protein Csa_1G690170 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa1G690170.1Csa1G690170.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa1G690170CSPI01G33480Wild cucumber (PI 183967)cpicuB001
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa1G690170Cucumber (Gy14) v1cgycuB417
Csa1G690170Cucumber (Gy14) v1cgycuB418
Csa1G690170Cucurbita maxima (Rimu)cmacuB064
Csa1G690170Cucurbita maxima (Rimu)cmacuB085
Csa1G690170Cucurbita moschata (Rifu)cmocuB075
Csa1G690170Cucurbita moschata (Rifu)cmocuB054
Csa1G690170Melon (DHL92) v3.5.1cumeB045
Csa1G690170Watermelon (Charleston Gray)cuwcgB085
Csa1G690170Cucurbita pepo (Zucchini)cpecuB639
Csa1G690170Cucurbita pepo (Zucchini)cpecuB701
Csa1G690170Bottle gourd (USVL1VR-Ls)culsiB058
Csa1G690170Bottle gourd (USVL1VR-Ls)culsiB081
Csa1G690170Cucumber (Gy14) v2cgybcuB002
Csa1G690170Melon (DHL92) v3.6.1cumedB037
Csa1G690170Silver-seed gourdcarcuB0927
Csa1G690170Watermelon (97103) v2cuwmbB082