Csa1G662780 (gene) Cucumber (Chinese Long) v2
The following sequences are available for this feature:
Legend: five_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.GATTAAGTTCTATGTGTGAGTTCCACAGTTTTCGGTCCATCAGAAAGCTCCCACGAAATTCAGAATGAGAGCCATCAACCCTTCTCTTCCATTTCCTCCTTACCAAACTTTCCCCAATTTCCTTCCTCCAAACCCTAACCCTAATTCCCATATCCATGATTCTTCACATTCTCAATCTCAACATCCTCCTCTCGACTTGTCTTCGTCCTTTTCCTCCCTCAATAATCTCATCCATTTCGCCAACCAAACCCTTCAATCTCTCTCCTACCTCACCCCATCTGATTTCGCGAACCATTCTCATCTCCTTCACTGCCATTTTGATCGTCGCCACCGTGTCCCCCCGCATTCTCTCTTCCGCCACTCCCTTCTCTGCCCTTCTGCTTCCCTGCTTCCTATTGACCCCACCCAACTTTTTCAATCCTTGCTTTACCCCCAAACGCTTCATTCATCTCGTCAATTGGTTAATGAAAACCGCTTCTCTCAAGTTCTCCCGGATTCGGATGCAGACCTTTGCTTTTCTCTCACTGATTATTCTGATGCCACTTCCAATTTCTTCTATGTTGATTGCCCTGGCGTCGTTGCCTTGTCTAACCTTGATGAAATGTCCAAAGTCTTCACACTTCCCCGTGTTTTGGCTGTTCATTGTGCTAATTTTGTCGGTAATGACCATTTCGAGATGAATAGTACTTTGAATGGGATACGAATACTTCCATCTGACTTGTGGAATCTTAGAAGTGAGGTAGAAATTTGGAATGACTATCCCAGTAAGTATTCGTTTGTTGTGCTTCGGTCCATATTGGGCTCAGAGATGGCTTTGAACAGCCATTTGATGACATGGATCATTGAAAATTCGCCTCGGTATGGTGTTGTTATCGATGTTGCTTTGAGGGATCATATATTTTTGCTGTTTAGGTTGTGTTTTATGGCAATTTATAAGGAAGCTTTGGGGTTTCAAGTTGCGTTGGAAAAAGGTAATGGAATGGAGGGTGAATCAGGGAATAGCTGTTTTAAGTGTCCGATTTTGATTCAAGTATTGATGTGGCTGGCATCGCAGCTTTCCGTGCTGTACGGGGAAACAAACGGGAACTTCTTTGCTGTTAACATGCTTAGACAATGTATACTAGATGCTGCATCGGGGTTGTTGCTTTTACAGTCCGAACAAAAATCTACGGAGAGTCTGACTTTAGGAGAGGGTTCTCATGATCTGGAAATTAGTTGTAGTGACACACAGAGTGTGAAGATGAACGAATTGGATCAGAAAGTTGTGAATAATGGCCATGCGGTCAATTGTAGTGTGATTCTTGTGTCCCAAGTTGCTGCAGCTGTTGCAGCATTGCATGAGCGTTTCCTACTTGAAGAAAAGATCAAAGCGTTACGCTTTGCTCATCTGCAAACTAAATATCAGCGGTATGTTACTTCTACAATTACTAGTTCTGTTTTTCGTGTAGGTACTAGTTTTGATCAAGTTGATGTTTTCCTTACTGTTATGATTGTGATATCATGTGTACAACAAATTTATGCTTGTTGTCTATTTTGGGAAGAAAAATAGTTGTTAGAAGACTTTAAAGGTAATGGGTCTACATCCATTGTGGTCTCCTACCTAGGATAGTAAAATTTTGGCAAGGGTTCATGTGAAATGCATGGAAGTGTTGACTTTCTTAGATATTATGTGAAAAAAATGACCAAAGGTGGGTCCCTTCGAGGACATACGGTATAATTGGAATGATGCAGAGAAGATTAGCATGGTCCCTATCACCCTGTGCAAGGATGACATGCACAAAAAAAGATGACCAAAAGAATTCTTGAGTCTCTGTCTTTGGGGCATAATACAGATAAAGAAAACTACAGAGGAGGAAAGTGAGGCAGCCTCTTGATTTTATTGATTGTAATTTCTTAGGGTTAAAACGAAACCTTTTCTATATAAAAAAAAAAGTAAACAAAACTATAGATTGAGGCATTGAATCTAACTTCAATCAAATTAATAAAGATTAGAGTAGTTTACCTGAATTTGTAGAGTCTCAGTTATTTACTCCATGCCTTTGATTTTATCAAAAGGATTTCTGTAAAAAGAAATGAGGATCTCACTTTTCAGGTAGGCAATTTTTGGAATCAGACTAATCCATTCTTAACTATTTTAGGGTTTCGGAGTATAATTATATCTCTCAAAGAGCTTGTGAAGAGCGCAAGAGATGTTGCAACTATAGACCTATAATTGAGCATGATGGACTCCCAAAGCAGCAGTCTCATAATGAGGTATTTCTGAACTCTTTACTGTTCTGGTTATTAATCATGCAGTTTTTAATTTTTTCTGCCTGTCTAGTTTTTCTGTTCATCTATTGATGATTTTAAATCTCATGAATTCTTCCTATTGACTGCTCTGAATTGGGATACCATGGGAATAGAACATAAAAATTTGTAGATTCTCTAATTCCAACGGAGCTTATGAGATGGCTGTTTTGTCATTCTTATCTTGCATTTTGTTCACCTCCTTAGTCCTTCCATATTATTTTATATAAAAAAGAATAAACCTCCTGTGGCAATAAATGATGAAGCAGCAGCAGCTGGCAGATTGCTTAATGTTCAGTGGCCCATGATGTTTCCTGTCTGTTTGTTTATAAAAAGCAGGATGCAAACAAGACCAAAACAAGGGAGGAATTGTTGGCTGAAGAGAGGGATTATAAACGTCGAAGAATGTCATACCGTGGAAAGAAAGCAAAGCGATCAACTTTACAGGTAACATCTTGTTAGAGTTATCTCTTGTAGGATGATTCTTATTTGCTATGATGAAGTTTTGCCTATATTGATGAAAAGGGATGATTCTTATTCATATACTTCAACCTTGCTTTTGTTATCTCTCTATTCTGTAATAGTTATGGGCATAGGGTCTAACTGTGGCATGCCAATTCCTTTTCTTATGATCTTTTATGGAAAAATATGAGATTATATATGTTTTCTAGCTTCTGCTTCAACTTTTGCCACCAGAAGTTTCTATGTTAGGTGATATCCTCACTCAAGTTTTTGCTAATTTTACTTTCCGTGGAAGGTTACAAGAGATATATTGAGGAATACGTGGAGGAGATTATGAAAGCTGGAGGAATTGGACGCTTTTGTGAAGGGACCTGAAGAGAGAGGAATAAAATCTGAACAACCAAGTGATCACAACCTTACAAAAAATATTACTGCTGACGTGCACACAAGAGGAAGCAACGACTCATATGGAGATGCCAGACATAGCTCAGGTCATTCCAAGAAGCAGTCTAATTATGATAGTAGATACTTGGCTTCTGAGAAGCCACAAAAAAGTCATTATGGGCACTATGTCTCTCCGGAAGATGAAAGGAAAATTTCCAGTAAGGACAAATATGATCGAGATCACTATCATAGGTTCTTAGATCAAAGCAGTGGTCCTAGCCAGTCACACAAATGGAAGAGATATCCTAATGATCGAGATGATGAGGTGACAGCAGAAACCAGGCATCATGAAACTAAAAAGCTGGCTTCTAGCAGCTCCCATGGAAGATCATCTTCATCCTCAAGATCTGGGGGTGGTTCAAGTGCAAGGAAAGTTAGCAATAAGTTGAGAGCCAGTGATAGTTGGAAGATGAACACGGCTGATAATCATAGTTCAGAGCATTTGGTGTTTAATTCATTTAATGATAGGTATACCCCATCTGATTGTCATGATGAATTGGAAGATGAGTACTCCACTGTCAGCAGATTATCTAAGTCCAGATGAACTTTAATTTTATGATCATTGAATGATGGGAAGGTGTGCTGCATGCCGTGCCATACTTCTTAACCTAACAAATCTCTACCTTGTGGTAAGTTTTTCTTTTATGCTACATCCCAAGAATCTTTAGCTGTGCGTTCTTCTATTACGGTTTTTTCTTTAACATTTTTGTTTCACACAACCTTGCAGCATGAAGTTTTATCTGGCTTGAGAAATTTATCCTCACCTGTATCCTCCATAGTATCCTTGAAGTTTATATCCCATTTTCTTATACATTGAATCTGTCTCAATCTCTACTCTTTCATTTATGTTTCTGAGAGATTTGCTACTAACTTAATGTTGCACTTGAATTTATTTGATTTACATCATCATCGTATAAAAGATACCAATTTTACATCCACTTTTTCTGTTCTGGGGTTGTCTTATAATTCTCGATTAATTACGAAGACAGATTAATGAAGTCGTCAGAAAAATGATTCATAAATAACATTTTATGGAGGGTGCAACCAACTGTTAGTTATGGTTATGAAATTACCATGTTATACGGTTGTTTCTTTTTGTACTCCTTGTTTGCTATGGTTTACACATTTTGGTGTTGCATCACTTGACCTTTACCTCTGCTTTTCGGTTGCAATTGGAGTTGGTCATTCAAAATCTTGTGGAAAATTAAAAAAATGATATACTCAGAAAAAAGATCGTAGAGTTTAGGCATTATAAACTGGTTAGTGAGGCAATATCATTGAATAAGCCAAACTTGTTTCCGGTCTCTTCCTAGTGAGATGAAAAGTAGTATAAGCTTTGGAGGGCTTATTGATGCATAATGATTTCACTTCAAAAACTTACTCATGTTCGTTATGGAGTGGTATGAAAGATTAATCTAGCAACTTAACAAACATTTTAGGCAATTACACTCAGTACTAGAACTCAACCTTATTACTGATATTCTATTAGTTCTAACTTTTGTATTGCATTTAGTGTTTTGACGAACAGCCCAGTTTATCAGTAAGGTATTGAAGGCAGTCTGGTGATGAATTTGATCAGAGATCTACAACCCACAGCGTTTCAGATCGTCTGTTGCAGGTTGCTTCATTCTACATTTATGCTCACA ATGAGAGCCATCAACCCTTCTCTTCCATTTCCTCCTTACCAAACTTTCCCCAATTTCCTTCCTCCAAACCCTAACCCTAATTCCCATATCCATGATTCTTCACATTCTCAATCTCAACATCCTCCTCTCGACTTGTCTTCGTCCTTTTCCTCCCTCAATAATCTCATCCATTTCGCCAACCAAACCCTTCAATCTCTCTCCTACCTCACCCCATCTGATTTCGCGAACCATTCTCATCTCCTTCACTGCCATTTTGATCGTCGCCACCGTGTCCCCCCGCATTCTCTCTTCCGCCACTCCCTTCTCTGCCCTTCTGCTTCCCTGCTTCCTATTGACCCCACCCAACTTTTTCAATCCTTGCTTTACCCCCAAACGCTTCATTCATCTCGTCAATTGGTTAATGAAAACCGCTTCTCTCAAGTTCTCCCGGATTCGGATGCAGACCTTTGCTTTTCTCTCACTGATTATTCTGATGCCACTTCCAATTTCTTCTATGTTGATTGCCCTGGCGTCGTTGCCTTGTCTAACCTTGATGAAATGTCCAAAGTCTTCACACTTCCCCGTGTTTTGGCTGTTCATTGTGCTAATTTTGTCGGTAATGACCATTTCGAGATGAATAGTACTTTGAATGGGATACGAATACTTCCATCTGACTTGTGGAATCTTAGAAGTGAGGTAGAAATTTGGAATGACTATCCCAGTAAGTATTCGTTTGTTGTGCTTCGGTCCATATTGGGCTCAGAGATGGCTTTGAACAGCCATTTGATGACATGGATCATTGAAAATTCGCCTCGGTATGGTGTTGTTATCGATGTTGCTTTGAGGGATCATATATTTTTGCTGTTTAGGTTGTGTTTTATGGCAATTTATAAGGAAGCTTTGGGGTTTCAAGTTGCGTTGGAAAAAGGTAATGGAATGGAGGGTGAATCAGGGAATAGCTGTTTTAAGTGTCCGATTTTGATTCAAGTATTGATGTGGCTGGCATCGCAGCTTTCCGTGCTGTACGGGGAAACAAACGGGAACTTCTTTGCTGTTAACATGCTTAGACAATGTATACTAGATGCTGCATCGGGGTTGTTGCTTTTACAGTCCGAACAAAAATCTACGGAGAGTCTGACTTTAGGAGAGGGTTCTCATGATCTGGAAATTAGTTGTAGTGACACACAGAGTGTGAAGATGAACGAATTGGATCAGAAAGTTGTGAATAATGGCCATGCGGTCAATTGTAGTGTGATTCTTGTGTCCCAAGTTGCTGCAGCTGTTGCAGCATTGCATGAGCGTTTCCTACTTGAAGAAAAGATCAAAGCGTTACGCTTTGCTCATCTGCAAACTAAATATCAGCGGGTTTCGGAGTATAATTATATCTCTCAAAGAGCTTGTGAAGAGCGCAAGAGATGTTGCAACTATAGACCTATAATTGAGCATGATGGACTCCCAAAGCAGCAGTCTCATAATGAGGATGCAAACAAGACCAAAACAAGGGAGGAATTGTTGGCTGAAGAGAGGGATTATAAACGTCGAAGAATGTCATACCGTGGAAAGAAAGCAAAGCGATCAACTTTACAGGTTACAAGAGATATATTGAGGAATACGTGGAGGAGATTATGA ATGAGAGCCATCAACCCTTCTCTTCCATTTCCTCCTTACCAAACTTTCCCCAATTTCCTTCCTCCAAACCCTAACCCTAATTCCCATATCCATGATTCTTCACATTCTCAATCTCAACATCCTCCTCTCGACTTGTCTTCGTCCTTTTCCTCCCTCAATAATCTCATCCATTTCGCCAACCAAACCCTTCAATCTCTCTCCTACCTCACCCCATCTGATTTCGCGAACCATTCTCATCTCCTTCACTGCCATTTTGATCGTCGCCACCGTGTCCCCCCGCATTCTCTCTTCCGCCACTCCCTTCTCTGCCCTTCTGCTTCCCTGCTTCCTATTGACCCCACCCAACTTTTTCAATCCTTGCTTTACCCCCAAACGCTTCATTCATCTCGTCAATTGGTTAATGAAAACCGCTTCTCTCAAGTTCTCCCGGATTCGGATGCAGACCTTTGCTTTTCTCTCACTGATTATTCTGATGCCACTTCCAATTTCTTCTATGTTGATTGCCCTGGCGTCGTTGCCTTGTCTAACCTTGATGAAATGTCCAAAGTCTTCACACTTCCCCGTGTTTTGGCTGTTCATTGTGCTAATTTTGTCGGTAATGACCATTTCGAGATGAATAGTACTTTGAATGGGATACGAATACTTCCATCTGACTTGTGGAATCTTAGAAGTGAGGTAGAAATTTGGAATGACTATCCCAGTAAGTATTCGTTTGTTGTGCTTCGGTCCATATTGGGCTCAGAGATGGCTTTGAACAGCCATTTGATGACATGGATCATTGAAAATTCGCCTCGGTATGGTGTTGTTATCGATGTTGCTTTGAGGGATCATATATTTTTGCTGTTTAGGTTGTGTTTTATGGCAATTTATAAGGAAGCTTTGGGGTTTCAAGTTGCGTTGGAAAAAGGTAATGGAATGGAGGGTGAATCAGGGAATAGCTGTTTTAAGTGTCCGATTTTGATTCAAGTATTGATGTGGCTGGCATCGCAGCTTTCCGTGCTGTACGGGGAAACAAACGGGAACTTCTTTGCTGTTAACATGCTTAGACAATGTATACTAGATGCTGCATCGGGGTTGTTGCTTTTACAGTCCGAACAAAAATCTACGGAGAGTCTGACTTTAGGAGAGGGTTCTCATGATCTGGAAATTAGTTGTAGTGACACACAGAGTGTGAAGATGAACGAATTGGATCAGAAAGTTGTGAATAATGGCCATGCGGTCAATTGTAGTGTGATTCTTGTGTCCCAAGTTGCTGCAGCTGTTGCAGCATTGCATGAGCGTTTCCTACTTGAAGAAAAGATCAAAGCGTTACGCTTTGCTCATCTGCAAACTAAATATCAGCGGGTTTCGGAGTATAATTATATCTCTCAAAGAGCTTGTGAAGAGCGCAAGAGATGTTGCAACTATAGACCTATAATTGAGCATGATGGACTCCCAAAGCAGCAGTCTCATAATGAGGATGCAAACAAGACCAAAACAAGGGAGGAATTGTTGGCTGAAGAGAGGGATTATAAACGTCGAAGAATGTCATACCGTGGAAAGAAAGCAAAGCGATCAACTTTACAGGTTACAAGAGATATATTGAGGAATACGTGGAGGAGATTATGA MRAINPSLPFPPYQTFPNFLPPNPNPNSHIHDSSHSQSQHPPLDLSSSFSSLNNLIHFANQTLQSLSYLTPSDFANHSHLLHCHFDRRHRVPPHSLFRHSLLCPSASLLPIDPTQLFQSLLYPQTLHSSRQLVNENRFSQVLPDSDADLCFSLTDYSDATSNFFYVDCPGVVALSNLDEMSKVFTLPRVLAVHCANFVGNDHFEMNSTLNGIRILPSDLWNLRSEVEIWNDYPSKYSFVVLRSILGSEMALNSHLMTWIIENSPRYGVVIDVALRDHIFLLFRLCFMAIYKEALGFQVALEKGNGMEGESGNSCFKCPILIQVLMWLASQLSVLYGETNGNFFAVNMLRQCILDAASGLLLLQSEQKSTESLTLGEGSHDLEISCSDTQSVKMNELDQKVVNNGHAVNCSVILVSQVAAAVAALHERFLLEEKIKALRFAHLQTKYQRVSEYNYISQRACEERKRCCNYRPIIEHDGLPKQQSHNEDANKTKTREELLAEERDYKRRRMSYRGKKAKRSTLQVTRDILRNTWRRL*
BLAST of Csa1G662780 vs. Swiss-Prot
Match: U1148_ARATH (U11/U12 small nuclear ribonucleoprotein 48 kDa protein OS=Arabidopsis thaliana GN=SNRNP48 PE=2 SV=1) HSP 1 Score: 410.6 bits (1054), Expect = 2.6e-113 Identity = 248/552 (44.93%), Postives = 327/552 (59.24%), Query Frame = 1
BLAST of Csa1G662780 vs. TrEMBL
Match: A0A0A0M085_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G662780 PE=4 SV=1) HSP 1 Score: 1087.4 bits (2811), Expect = 0.0e+00 Identity = 535/535 (100.00%), Postives = 535/535 (100.00%), Query Frame = 1
BLAST of Csa1G662780 vs. TrEMBL
Match: M5W6C9_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa001825mg PE=4 SV=1) HSP 1 Score: 469.5 bits (1207), Expect = 5.3e-129 Identity = 275/542 (50.74%), Postives = 347/542 (64.02%), Query Frame = 1
BLAST of Csa1G662780 vs. TrEMBL
Match: W9S254_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_006471 PE=4 SV=1) HSP 1 Score: 466.5 bits (1199), Expect = 4.5e-128 Identity = 278/546 (50.92%), Postives = 351/546 (64.29%), Query Frame = 1
BLAST of Csa1G662780 vs. TrEMBL
Match: A0A061F1I4_THECC (U11/U12 small nuclear ribonucleoprotein 48 kDa protein, putative isoform 1 OS=Theobroma cacao GN=TCM_026062 PE=4 SV=1) HSP 1 Score: 440.3 bits (1131), Expect = 3.4e-120 Identity = 251/528 (47.54%), Postives = 330/528 (62.50%), Query Frame = 1
BLAST of Csa1G662780 vs. TrEMBL
Match: V4T8D0_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10019009mg PE=4 SV=1) HSP 1 Score: 431.8 bits (1109), Expect = 1.2e-117 Identity = 264/533 (49.53%), Postives = 332/533 (62.29%), Query Frame = 1
BLAST of Csa1G662780 vs. TAIR10
Match: AT3G04160.2 (AT3G04160.2 unknown protein) HSP 1 Score: 399.1 bits (1024), Expect = 4.4e-111 Identity = 246/554 (44.40%), Postives = 323/554 (58.30%), Query Frame = 1
BLAST of Csa1G662780 vs. NCBI nr
Match: gi|778664192|ref|XP_004142553.2| (PREDICTED: U11/U12 small nuclear ribonucleoprotein 48 kDa protein isoform X2 [Cucumis sativus]) HSP 1 Score: 1087.4 bits (2811), Expect = 0.0e+00 Identity = 535/535 (100.00%), Postives = 535/535 (100.00%), Query Frame = 1
BLAST of Csa1G662780 vs. NCBI nr
Match: gi|778664187|ref|XP_011660240.1| (PREDICTED: U11/U12 small nuclear ribonucleoprotein 48 kDa protein isoform X1 [Cucumis sativus]) HSP 1 Score: 1082.8 bits (2799), Expect = 0.0e+00 Identity = 535/536 (99.81%), Postives = 535/536 (99.81%), Query Frame = 1
BLAST of Csa1G662780 vs. NCBI nr
Match: gi|659086077|ref|XP_008443753.1| (PREDICTED: uncharacterized protein LOC103487266 [Cucumis melo]) HSP 1 Score: 979.2 bits (2530), Expect = 3.0e-282 Identity = 491/533 (92.12%), Postives = 502/533 (94.18%), Query Frame = 1
BLAST of Csa1G662780 vs. NCBI nr
Match: gi|645222904|ref|XP_008218377.1| (PREDICTED: uncharacterized protein LOC103318737 [Prunus mume]) HSP 1 Score: 473.0 bits (1216), Expect = 6.9e-130 Identity = 276/538 (51.30%), Postives = 351/538 (65.24%), Query Frame = 1
BLAST of Csa1G662780 vs. NCBI nr
Match: gi|595840682|ref|XP_007208065.1| (hypothetical protein PRUPE_ppa001825mg [Prunus persica]) HSP 1 Score: 469.5 bits (1207), Expect = 7.6e-129 Identity = 275/542 (50.74%), Postives = 347/542 (64.02%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
This gene is associated with the following unigenes:
The following mRNA feature(s) are a part of this gene:
The following transcribed_cluster feature(s) are associated with this gene:
Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene:
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