Csa1G654880 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa1G654880
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionRetrotransposon protein
LocationChr1 : 26182813 .. 26183759 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGTTACGTAACCAGTAGTGTCTTTCGTGTTTACTTAACTATTTTGAATATAATGTGTAGTTAATTTGTCATGTGTTGTGAAATGATTGCACCAGTAACACTCTTTACGTATCTTCGTATAATGATGTTTACTATATTTTGAGAATGACTGTTTACAATTAATTAAGTTAAAATACTATTATTTGTTGTTTAATTTTATTAAATCATGTACCTATATACACTAGAATGACAAGTTCCTCTAGAGCCCCAAAACACACTTGGATTAAAGAGGAAGAGCGAAACTGGTTGAGTGCTTGGTAGAATTTGGCTCATCTGATGGATAGATATTAGATAATGGGACATTTTGACCTAGGTACTTGGCACAATTACAACGTATGATGGTAGAGAAGTTGTCCAACTGTAATATTTAAGGATGACTCACTATAGATTTTTCATGTCAAATCCTTAAAAAACCTACCAAGCAATTACAGAAATGAGAAAGCCATCATGCAGTGGCTTCAGATGGAACAAAGAATTTCAATGAATCGTCATAAAACGGTAGATATTATAATCCAAATAATCAGCTAATTGATTTAACTTTTCTTATAGAGCCATTCTGCAGCAAAAAGGGCTTCAACACAAATCAAAGATTTATACATGATCCAGACATCAAAGATCAGGCTACAGAAGGACGCTTAGAGATCTTTGTTGACATCAAGTCTAATGTGCCAAACCAGTTTAATGATGGTGTTCCTTTTGGTGATTCACATGATCCAAACATCCTTATGATGTATAGCCAAGGAATGGACATGTCATCGGATGAGATGTTAGGAACATGTGTAGGTCAAACAAGTGAAGGAAGAAATACTTCCAATGGGAACAAGAGGAAACAAGGTGGACAATATTATGAAATGATGGAAGTGTTAAGGAATGCAATGGAATTTGCAAATGACCCGTTAAAGTAA

mRNA sequence

ATGAAGTTACAGCCATTCTGCAGCAAAAAGGGCTTCAACACAAATCAAAGATTTATACATGATCCAGACATCAAAGATCAGGCTACAGAAGGACGCTTAGAGATCTTTGTTGACATCAAGTCTAATGTGCCAAACCAGTTTAATGATGGTGTTCCTTTTGGTGATTCACATGATCCAAACATCCTTATGATGTATAGCCAAGGAATGGACATGTCATCGGATGAGATGTTAGGAACATGTGTAGGTCAAACAAGTGAAGGAAGAAATACTTCCAATGGGAACAAGAGGAAACAAGGTGGACAATATTATGAAATGATGGAAGTGTTAAGGAATGCAATGGAATTTGCAAATGACCCGTTAAAGTAA

Coding sequence (CDS)

ATGAAGTTACAGCCATTCTGCAGCAAAAAGGGCTTCAACACAAATCAAAGATTTATACATGATCCAGACATCAAAGATCAGGCTACAGAAGGACGCTTAGAGATCTTTGTTGACATCAAGTCTAATGTGCCAAACCAGTTTAATGATGGTGTTCCTTTTGGTGATTCACATGATCCAAACATCCTTATGATGTATAGCCAAGGAATGGACATGTCATCGGATGAGATGTTAGGAACATGTGTAGGTCAAACAAGTGAAGGAAGAAATACTTCCAATGGGAACAAGAGGAAACAAGGTGGACAATATTATGAAATGATGGAAGTGTTAAGGAATGCAATGGAATTTGCAAATGACCCGTTAAAGTAA

Protein sequence

MKLQPFCSKKGFNTNQRFIHDPDIKDQATEGRLEIFVDIKSNVPNQFNDGVPFGDSHDPNILMMYSQGMDMSSDEMLGTCVGQTSEGRNTSNGNKRKQGGQYYEMMEVLRNAMEFANDPLK*
Homology
[Close]
BLAST of Csa1G654880 vs. TrEMBL
Match: A0A0A0M036_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G654880 PE=4 SV=1)

HSP 1 Score: 254.6 bits (649), Expect = 6.1e-65
Identity = 121/121 (100.00%), Postives = 121/121 (100.00%), Query Frame = 1 

Query: 1   MKLQPFCSKKGFNTNQRFIHDPDIKDQATEGRLEIFVDIKSNVPNQFNDGVPFGDSHDPN 60
           MKLQPFCSKKGFNTNQRFIHDPDIKDQATEGRLEIFVDIKSNVPNQFNDGVPFGDSHDPN
Sbjct: 1   MKLQPFCSKKGFNTNQRFIHDPDIKDQATEGRLEIFVDIKSNVPNQFNDGVPFGDSHDPN 60

Query: 61  ILMMYSQGMDMSSDEMLGTCVGQTSEGRNTSNGNKRKQGGQYYEMMEVLRNAMEFANDPL 120
           ILMMYSQGMDMSSDEMLGTCVGQTSEGRNTSNGNKRKQGGQYYEMMEVLRNAMEFANDPL
Sbjct: 61  ILMMYSQGMDMSSDEMLGTCVGQTSEGRNTSNGNKRKQGGQYYEMMEVLRNAMEFANDPL 120

Query: 121 K 122
           K
Sbjct: 121 K 121

[Close]
BLAST of Csa1G654880 vs. TrEMBL
Match: E5GBB1_CUCME (Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 2.5e-18
Identity = 47/75 (62.67%), Postives = 58/75 (77.33%), Query Frame = 1 

Query: 47  FNDGVPFGDSHDPNILMMYSQGMDMSSDEMLGTCVGQTSEGRNTSNGNKRKQGGQYYEMM 106
           FNDGVP GDSHD +I  MYSQG+ M S+EM G    Q SE RN S+G+KRKQG ++YEM+
Sbjct: 2   FNDGVPLGDSHDQDIPTMYSQGVHMLSNEMFGIRADQASERRNCSSGSKRKQGSEHYEMV 61

Query: 107 EVLRNAMEFANDPLK 122
           EV+++AMEF ND LK
Sbjct: 62  EVIKSAMEFGNDQLK 76

[Close]
BLAST of Csa1G654880 vs. TrEMBL
Match: A0A0A0KFW0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G116150 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 6.6e-11
Identity = 37/58 (63.79%), Postives = 45/58 (77.59%), Query Frame = 1 

Query: 64  MYSQGMDMSSDEMLGTCVGQTSEGRNTSNGNKRKQGGQYYEMMEVLRNAMEFANDPLK 122
           MYSQG+DM  DEMLGT   Q+SEGRN S+G+KRK GGQ+YE ++V+ N ME  ND LK
Sbjct: 1   MYSQGLDMPPDEMLGT--RQSSEGRNCSSGSKRKHGGQHYEAVDVISNEMEVRNDQLK 56

[Close]
BLAST of Csa1G654880 vs. NCBI nr
Match: gi|700211563|gb|KGN66659.1| (hypothetical protein Csa_1G654880 [Cucumis sativus])

HSP 1 Score: 254.6 bits (649), Expect = 8.7e-65
Identity = 121/121 (100.00%), Postives = 121/121 (100.00%), Query Frame = 1 

Query: 1   MKLQPFCSKKGFNTNQRFIHDPDIKDQATEGRLEIFVDIKSNVPNQFNDGVPFGDSHDPN 60
           MKLQPFCSKKGFNTNQRFIHDPDIKDQATEGRLEIFVDIKSNVPNQFNDGVPFGDSHDPN
Sbjct: 1   MKLQPFCSKKGFNTNQRFIHDPDIKDQATEGRLEIFVDIKSNVPNQFNDGVPFGDSHDPN 60

Query: 61  ILMMYSQGMDMSSDEMLGTCVGQTSEGRNTSNGNKRKQGGQYYEMMEVLRNAMEFANDPL 120
           ILMMYSQGMDMSSDEMLGTCVGQTSEGRNTSNGNKRKQGGQYYEMMEVLRNAMEFANDPL
Sbjct: 61  ILMMYSQGMDMSSDEMLGTCVGQTSEGRNTSNGNKRKQGGQYYEMMEVLRNAMEFANDPL 120

Query: 121 K 122
           K
Sbjct: 121 K 121

[Close]
BLAST of Csa1G654880 vs. NCBI nr
Match: gi|659113923|ref|XP_008456820.1| (PREDICTED: uncharacterized protein LOC103496659 [Cucumis melo])

HSP 1 Score: 110.9 bits (276), Expect = 1.6e-21
Identity = 55/96 (57.29%), Postives = 68/96 (70.83%), Query Frame = 1 

Query: 26  DQATEGRLEIFVDIKSNVPNQFNDGVPFGDSHDPNILMMYSQGMDMSSDEMLGTCVGQTS 85
           D AT    E F D  SNV N FNDGVP GDSH+ +IL +YSQG+ MS DE+ G   GQ S
Sbjct: 96  DGATGAHSETFADGGSNVSNMFNDGVPLGDSHNQDILTIYSQGVHMSLDEIFGIRAGQAS 155

Query: 86  EGRNTSNGNKRKQGGQYYEMMEVLRNAMEFANDPLK 122
           E RN S+G+KRK+G ++YEM+EV+ +A EF ND LK
Sbjct: 156 ERRNYSSGSKRKRGSKHYEMVEVISSATEFGNDQLK 191

[Close]
BLAST of Csa1G654880 vs. NCBI nr
Match: gi|659082641|ref|XP_008441954.1| (PREDICTED: uncharacterized protein At2g29880-like [Cucumis melo])

HSP 1 Score: 110.2 bits (274), Expect = 2.7e-21
Identity = 54/97 (55.67%), Postives = 68/97 (70.10%), Query Frame = 1 

Query: 25  KDQATEGRLEIFVDIKSNVPNQFNDGVPFGDSHDPNILMMYSQGMDMSSDEMLGTCVGQT 84
           KD+AT  R E F ++ SNV N FND +P GDSHD +I  MYSQG+ MS DEM G   GQ 
Sbjct: 138 KDRATGARSETFPNVGSNVSNMFNDTIPLGDSHDEDIPTMYSQGVHMSPDEMFGIRAGQA 197

Query: 85  SEGRNTSNGNKRKQGGQYYEMMEVLRNAMEFANDPLK 122
           SE RN S+ +KRK+G + YE +EV+R+ MEF N+ LK
Sbjct: 198 SERRNCSSVSKRKRGSERYETVEVIRSVMEFGNEQLK 234

[Close]
BLAST of Csa1G654880 vs. NCBI nr
Match: gi|307135888|gb|ADN33753.1| (hypothetical protein [Cucumis melo subsp. melo])

HSP 1 Score: 99.8 bits (247), Expect = 3.6e-18
Identity = 47/75 (62.67%), Postives = 58/75 (77.33%), Query Frame = 1 

Query: 47  FNDGVPFGDSHDPNILMMYSQGMDMSSDEMLGTCVGQTSEGRNTSNGNKRKQGGQYYEMM 106
           FNDGVP GDSHD +I  MYSQG+ M S+EM G    Q SE RN S+G+KRKQG ++YEM+
Sbjct: 2   FNDGVPLGDSHDQDIPTMYSQGVHMLSNEMFGIRADQASERRNCSSGSKRKQGSEHYEMV 61

Query: 107 EVLRNAMEFANDPLK 122
           EV+++AMEF ND LK
Sbjct: 62  EVIKSAMEFGNDQLK 76

[Close]
BLAST of Csa1G654880 vs. NCBI nr
Match: gi|659111565|ref|XP_008455793.1| (PREDICTED: uncharacterized protein At2g29880-like [Cucumis melo])

HSP 1 Score: 93.2 bits (230), Expect = 3.4e-16
Identity = 45/73 (61.64%), Postives = 53/73 (72.60%), Query Frame = 1 

Query: 25  KDQATEGRLEIFVDIKSNVPNQFNDGVPFGDSHDPNILMMYSQGMDMSSDEMLGTCVGQT 84
           KD+AT  R E FVD+ SNVPN FND +P GDSHD +I  MYSQG+ +S DEM G   GQ 
Sbjct: 87  KDRATGARSETFVDVGSNVPNMFNDTIPLGDSHDEDIPTMYSQGVHISPDEMFGIRAGQA 146

Query: 85  SEGRNTSNGNKRK 98
           SE RN S+G+KRK
Sbjct: 147 SERRNCSSGSKRK 159

The following BLAST results are available for this feature:
BLAST of Csa1G654880 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0M036_CUCSA6.1e-65100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G654880 PE=4 SV=1[more]
E5GBB1_CUCME2.5e-1862.67Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
A0A0A0KFW0_CUCSA6.6e-1163.79Uncharacterized protein OS=Cucumis sativus GN=Csa_6G116150 PE=4 SV=1[more]
BLAST of Csa1G654880 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700211563|gb|KGN66659.1|8.7e-65100.00hypothetical protein Csa_1G654880 [Cucumis sativus][more]
gi|659113923|ref|XP_008456820.1|1.6e-2157.29PREDICTED: uncharacterized protein LOC103496659 [Cucumis melo][more]
gi|659082641|ref|XP_008441954.1|2.7e-2155.67PREDICTED: uncharacterized protein At2g29880-like [Cucumis melo][more]
gi|307135888|gb|ADN33753.1|3.6e-1862.67hypothetical protein [Cucumis melo subsp. melo][more]
gi|659111565|ref|XP_008455793.1|3.4e-1661.64PREDICTED: uncharacterized protein At2g29880-like [Cucumis melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa1G654880.1Csa1G654880.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa1G654880Cucumber (Gy14) v1cgycuB500
Csa1G654880Cucurbita maxima (Rimu)cmacuB057
Csa1G654880Cucurbita maxima (Rimu)cmacuB085
Csa1G654880Cucurbita moschata (Rifu)cmocuB075
Csa1G654880Cucurbita moschata (Rifu)cmocuB047
Csa1G654880Melon (DHL92) v3.5.1cumeB043
Csa1G654880Watermelon (Charleston Gray)cuwcgB038
Csa1G654880Watermelon (97103) v1cuwmB011
Csa1G654880Cucurbita pepo (Zucchini)cpecuB000
Csa1G654880Cucurbita pepo (Zucchini)cpecuB349
Csa1G654880Bottle gourd (USVL1VR-Ls)culsiB058
Csa1G654880Cucumber (Gy14) v2cgybcuB002
Csa1G654880Melon (DHL92) v3.6.1cumedB035
Csa1G654880Silver-seed gourdcarcuB0565
Csa1G654880Silver-seed gourdcarcuB0982
Csa1G654880Watermelon (97103) v2cuwmbB035
Csa1G654880Wax gourdcuwgoB090
Csa1G654880Wax gourdcuwgoB110