Csa1G653340 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa1G653340
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr1 : 26092924 .. 26093163 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGCTCACATAGTGAAAAATATATCGAAGAAGATGACATGGACATTAATCTCGAAGACTTTGATATTCCAAATCTACATGGACTCGAGCCACCATCGGAGGAGGACATGTCATCCACTAAAACAAGTATGACACATGATGCTAGATTAACTAGGCCAAGTAAAAAAAAGACAATCATATTCAGGGGACCTCATAGACACATTTCGCATAAGTATGCTAGAAACTTTCAAGGAAATTGA

mRNA sequence

ATGGGCTCACATAGTGAAAAATATATCGAAGAAGATGACATGGACATTAATCTCGAAGACTTTGATATTCCAAATCTACATGGACTCGAGCCACCATCGGAGGAGGACATGTCATCCACTAAAACAAGTATGACACATGATGCTAGATTAACTAGGCCAAGTAAAAAAAAGACAATCATATTCAGGGGACCTCATAGACACATTTCGCATAAGTATGCTAGAAACTTTCAAGGAAATTGA

Coding sequence (CDS)

ATGGGCTCACATAGTGAAAAATATATCGAAGAAGATGACATGGACATTAATCTCGAAGACTTTGATATTCCAAATCTACATGGACTCGAGCCACCATCGGAGGAGGACATGTCATCCACTAAAACAAGTATGACACATGATGCTAGATTAACTAGGCCAAGTAAAAAAAAGACAATCATATTCAGGGGACCTCATAGACACATTTCGCATAAGTATGCTAGAAACTTTCAAGGAAATTGA

Protein sequence

MGSHSEKYIEEDDMDINLEDFDIPNLHGLEPPSEEDMSSTKTSMTHDARLTRPSKKKTIIFRGPHRHISHKYARNFQGN*

Homology

[Close]

BLAST of Csa1G653340 vs. TrEMBL
Match: A0A0A0LY11_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G653340 PE=4 SV=1)

HSP 1 Score: 168.3 bits (425), Expect = 3.8e-39
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 1


Query: 1  MGSHSEKYIEEDDMDINLEDFDIPNLHGLEPPSEEDMSSTKTSMTHDARLTRPSKKKTII 60
          MGSHSEKYIEEDDMDINLEDFDIPNLHGLEPPSEEDMSSTKTSMTHDARLTRPSKKKTII
Sbjct: 1  MGSHSEKYIEEDDMDINLEDFDIPNLHGLEPPSEEDMSSTKTSMTHDARLTRPSKKKTII 60

Query: 61 FRGPHRHISHKYARNFQGN 80
          FRGPHRHISHKYARNFQGN
Sbjct: 61 FRGPHRHISHKYARNFQGN 79

[Close]

BLAST of Csa1G653340 vs. TrEMBL
Match: A0A0A0L1J1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G333120 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 1.5e-11
Identity = 39/56 (69.64%), Postives = 44/56 (78.57%), Query Frame = 1


Query: 1  MGSHSEKYIEEDDMDINLEDFDIPNLHGLEPPSEEDMSSTKTSMTHDARLTRPSKK 57
          M S + K IEEDDMDINL +FDIPN + LEPPS +DMSST TSM HDAR +R SKK
Sbjct: 22 MDSQTAKDIEEDDMDINLGNFDIPNSYILEPPSGQDMSSTPTSMAHDARSSRLSKK 77

[Close]

BLAST of Csa1G653340 vs. TrEMBL
Match: A0A0A0M0S6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G665930 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 3.4e-08
Identity = 34/57 (59.65%), Postives = 41/57 (71.93%), Query Frame = 1


Query: 1   MGSHSEKYIEEDDMDINLEDFDIPNLHGLEPPSEEDMSSTKTSMTHDARLTRPSKKK 58
           M   + K IE+DD+ INLEDFDIP  HGLE PS ++MSST TSM  DAR  R S+K+
Sbjct: 127 MDPQTTKDIEKDDIGINLEDFDIPKPHGLELPSVKNMSSTPTSMILDARSYRQSRKR 183

[Close]

BLAST of Csa1G653340 vs. NCBI nr
Match: gi|700211557|gb|KGN66653.1| (hypothetical protein Csa_1G653340 [Cucumis sativus])

HSP 1 Score: 168.3 bits (425), Expect = 5.4e-39
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 1


Query: 1  MGSHSEKYIEEDDMDINLEDFDIPNLHGLEPPSEEDMSSTKTSMTHDARLTRPSKKKTII 60
          MGSHSEKYIEEDDMDINLEDFDIPNLHGLEPPSEEDMSSTKTSMTHDARLTRPSKKKTII
Sbjct: 1  MGSHSEKYIEEDDMDINLEDFDIPNLHGLEPPSEEDMSSTKTSMTHDARLTRPSKKKTII 60

Query: 61 FRGPHRHISHKYARNFQGN 80
          FRGPHRHISHKYARNFQGN
Sbjct: 61 FRGPHRHISHKYARNFQGN 79

[Close]

BLAST of Csa1G653340 vs. NCBI nr
Match: gi|659125959|ref|XP_008462939.1| (PREDICTED: uncharacterized protein At2g29880-like [Cucumis melo])

HSP 1 Score: 130.6 bits (327), Expect = 1.2e-27
Identity = 62/79 (78.48%), Postives = 66/79 (83.54%), Query Frame = 1


Query: 1   MGSHSEKYIEEDDMDINLEDFDIPNLHGLEPPSEEDMSSTKTSMTHDARLTRPSKKKTII 60
           MGS + +  EEDDMDINLEDFDIPN HGLEPPS EDM ST TSM HDA  +RPSKKKT+I
Sbjct: 123 MGSQTARDTEEDDMDINLEDFDIPNPHGLEPPSGEDMPSTPTSMAHDAGSSRPSKKKTVI 182

Query: 61  FRGPHRHISHKYARNFQGN 80
           FRGPH HIS KYARNFQGN
Sbjct: 183 FRGPHGHISRKYARNFQGN 201

[Close]

BLAST of Csa1G653340 vs. NCBI nr
Match: gi|659125386|ref|XP_008462659.1| (PREDICTED: uncharacterized protein LOC103500963 [Cucumis melo])

HSP 1 Score: 86.3 bits (212), Expect = 2.7e-14
Identity = 42/57 (73.68%), Postives = 45/57 (78.95%), Query Frame = 1


Query: 1   MGSHSEKYIEEDDMDINLEDFDIPNLHGLEPPSEEDMSSTKTSMTHDARLTRPSKKK 58
           MGS   K  EEDDMDINLEDFDIPN H LEPPS EDM+ST TSM HDA  +RPSKK+
Sbjct: 69  MGSQIAKDTEEDDMDINLEDFDIPNPHELEPPSREDMTSTPTSMAHDAGSSRPSKKR 125

[Close]

BLAST of Csa1G653340 vs. NCBI nr
Match: gi|659111294|ref|XP_008455678.1| (PREDICTED: uncharacterized protein At2g29880-like [Cucumis melo])

HSP 1 Score: 84.7 bits (208), Expect = 7.9e-14
Identity = 41/57 (71.93%), Postives = 45/57 (78.95%), Query Frame = 1


Query: 1   MGSHSEKYIEEDDMDINLEDFDIPNLHGLEPPSEEDMSSTKTSMTHDARLTRPSKKK 58
           M S + +  EEDDMDINLEDFDIPN HGLEPPS EDM ST  SMTHDA  +RPSKK+
Sbjct: 185 MASQTARDTEEDDMDINLEDFDIPNPHGLEPPSGEDMPSTLISMTHDAGSSRPSKKR 241

[Close]

BLAST of Csa1G653340 vs. NCBI nr
Match: gi|659071532|ref|XP_008460440.1| (PREDICTED: uncharacterized protein LOC103499248 [Cucumis melo])

HSP 1 Score: 83.6 bits (205), Expect = 1.7e-13
Identity = 40/57 (70.18%), Postives = 44/57 (77.19%), Query Frame = 1


Query: 1   MGSHSEKYIEEDDMDINLEDFDIPNLHGLEPPSEEDMSSTKTSMTHDARLTRPSKKK 58
           MG    +  EEDDMDINLEDFDIPN HGLEPPS EDMSST TSM HD   ++PSKK+
Sbjct: 68  MGLQIARDTEEDDMDINLEDFDIPNPHGLEPPSGEDMSSTPTSMAHDVGSSKPSKKR 124

The following BLAST results are available for this feature:

BLAST of Csa1G653340 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LY11_CUCSA	3.8e-39	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G653340 PE=4 SV=1	[more]
A0A0A0L1J1_CUCSA	1.5e-11	69.64	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G333120 PE=4 SV=1	[more]
A0A0A0M0S6_CUCSA	3.4e-08	59.65	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G665930 PE=4 SV=1	[more]

BLAST of Csa1G653340 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700211557\|gb\|KGN66653.1\|	5.4e-39	100.00	hypothetical protein Csa_1G653340 [Cucumis sativus]	[more]
gi\|659125959\|ref\|XP_008462939.1\|	1.2e-27	78.48	PREDICTED: uncharacterized protein At2g29880-like [Cucumis melo]	[more]
gi\|659125386\|ref\|XP_008462659.1\|	2.7e-14	73.68	PREDICTED: uncharacterized protein LOC103500963 [Cucumis melo]	[more]
gi\|659111294\|ref\|XP_008455678.1\|	7.9e-14	71.93	PREDICTED: uncharacterized protein At2g29880-like [Cucumis melo]	[more]
gi\|659071532\|ref\|XP_008460440.1\|	1.7e-13	70.18	PREDICTED: uncharacterized protein LOC103499248 [Cucumis melo]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa1G653340.1	Csa1G653340.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa1G653340	CSPI01G32130	Wild cucumber (PI 183967)	cpicuB001

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa1G653340	Cucurbita pepo (Zucchini)	cpecuB000
Csa1G653340	Cucurbita pepo (Zucchini)	cpecuB349
Csa1G653340	Bottle gourd (USVL1VR-Ls)	culsiB058
Csa1G653340	Cucumber (Gy14) v2	cgybcuB002
Csa1G653340	Melon (DHL92) v3.6.1	cumedB035
Csa1G653340	Silver-seed gourd	carcuB0565
Csa1G653340	Silver-seed gourd	carcuB0982
Csa1G653340	Watermelon (97103) v2	cuwmbB035
Csa1G653340	Wax gourd	cuwgoB110
Csa1G653340	Cucumber (Gy14) v1	cgycuB500
Csa1G653340	Cucurbita maxima (Rimu)	cmacuB057
Csa1G653340	Cucurbita maxima (Rimu)	cmacuB085
Csa1G653340	Cucurbita moschata (Rifu)	cmocuB075
Csa1G653340	Cucurbita moschata (Rifu)	cmocuB047
Csa1G653340	Melon (DHL92) v3.5.1	cumeB043
Csa1G653340	Watermelon (Charleston Gray)	cuwcgB038
Csa1G653340	Watermelon (97103) v1	cuwmB011