Csa1G652210 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa1G652210
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr1 : 25876865 .. 25877125 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGGCAAGAAGAAGCCATTTACCATGACTTCACAGACCTAGAGTCAAGGATGGGCAGGATAAGGCTTGATGATGGTGTCCCACCGAAGTACAAACACATGAAGCATTATGCAAGCAAAATAGATTTAAGAGTAGGAGGACCAAGTGAGAAAGAAGAAATTAAGGTCCCTACAAAATACTCTGATAAGGTAAAAAAGTTCATTAAGGAGCTAGAAGTGGAAGAAAAGAAGAAGAAAGAGGAGGAAAGAAAAAGAATATAA

mRNA sequence

ATGAGGCAAGAAGAAGCCATTTACCATGACTTCACAGACCTAGAGTCAAGGATGGGCAGGATAAGGCTTGATGATGGTGTCCCACCGAAGTACAAACACATGAAGCATTATGCAAGCAAAATAGATTTAAGAGTAGGAGGACCAAGTGAGAAAGAAGAAATTAAGGTCCCTACAAAATACTCTGATAAGGTAAAAAAGTTCATTAAGGAGCTAGAAGTGGAAGAAAAGAAGAAGAAAGAGGAGGAAAGAAAAAGAATATAA

Coding sequence (CDS)

ATGAGGCAAGAAGAAGCCATTTACCATGACTTCACAGACCTAGAGTCAAGGATGGGCAGGATAAGGCTTGATGATGGTGTCCCACCGAAGTACAAACACATGAAGCATTATGCAAGCAAAATAGATTTAAGAGTAGGAGGACCAAGTGAGAAAGAAGAAATTAAGGTCCCTACAAAATACTCTGATAAGGTAAAAAAGTTCATTAAGGAGCTAGAAGTGGAAGAAAAGAAGAAGAAAGAGGAGGAAAGAAAAAGAATATAA

Protein sequence

MRQEEAIYHDFTDLESRMGRIRLDDGVPPKYKHMKHYASKIDLRVGGPSEKEEIKVPTKYSDKVKKFIKELEVEEKKKKEEERKRI*

Homology

[Close]

BLAST of Csa1G652210 vs. TrEMBL
Match: A0A0A0LXZ8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G652210 PE=4 SV=1)

HSP 1 Score: 176.4 bits (446), Expect = 1.5e-41
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 1


Query: 1  MRQEEAIYHDFTDLESRMGRIRLDDGVPPKYKHMKHYASKIDLRVGGPSEKEEIKVPTKY 60
          MRQEEAIYHDFTDLESRMGRIRLDDGVPPKYKHMKHYASKIDLRVGGPSEKEEIKVPTKY
Sbjct: 1  MRQEEAIYHDFTDLESRMGRIRLDDGVPPKYKHMKHYASKIDLRVGGPSEKEEIKVPTKY 60

Query: 61 SDKVKKFIKELEVEEKKKKEEERKRI 87
          SDKVKKFIKELEVEEKKKKEEERKRI
Sbjct: 61 SDKVKKFIKELEVEEKKKKEEERKRI 86

[Close]

BLAST of Csa1G652210 vs. NCBI nr
Match: gi|700211542|gb|KGN66638.1| (hypothetical protein Csa_1G652210 [Cucumis sativus])

HSP 1 Score: 176.4 bits (446), Expect = 2.2e-41
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 1


Query: 1  MRQEEAIYHDFTDLESRMGRIRLDDGVPPKYKHMKHYASKIDLRVGGPSEKEEIKVPTKY 60
          MRQEEAIYHDFTDLESRMGRIRLDDGVPPKYKHMKHYASKIDLRVGGPSEKEEIKVPTKY
Sbjct: 1  MRQEEAIYHDFTDLESRMGRIRLDDGVPPKYKHMKHYASKIDLRVGGPSEKEEIKVPTKY 60

Query: 61 SDKVKKFIKELEVEEKKKKEEERKRI 87
          SDKVKKFIKELEVEEKKKKEEERKRI
Sbjct: 61 SDKVKKFIKELEVEEKKKKEEERKRI 86

[Close]

BLAST of Csa1G652210 vs. NCBI nr
Match: gi|659072222|ref|XP_008464070.1| (PREDICTED: stress response protein NST1-like [Cucumis melo])

HSP 1 Score: 59.7 bits (143), Expect = 2.9e-06
Identity = 39/93 (41.94%), Postives = 53/93 (56.99%), Query Frame = 1


Query: 1   MRQEEAIYHDFTDLESRMGRIRLDDGVPPKYKHMKHYASKIDLRVGGPSEKEEIKVPTKY 60
           M Q+E I     +LE  M  + LD    P+YKH KH  SK+ +     S+KE  +VP+++
Sbjct: 96  MGQKENICKGLPNLEPGMETMWLDKN-QPRYKHTKHGVSKVLVSHIEASDKEGTQVPSQF 155

Query: 61  SDKVKKFIKELE---------VEEKKKKEEERK 85
            DKV +FIKELE         VE KK K+E+RK
Sbjct: 156 FDKVLEFIKELEAAKRKKSEVVERKKSKDEKRK 187

The following BLAST results are available for this feature:

BLAST of Csa1G652210 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LXZ8_CUCSA	1.5e-41	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G652210 PE=4 SV=1	[more]

BLAST of Csa1G652210 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700211542\|gb\|KGN66638.1\|	2.2e-41	100.00	hypothetical protein Csa_1G652210 [Cucumis sativus]	[more]
gi\|659072222\|ref\|XP_008464070.1\|	2.9e-06	41.94	PREDICTED: stress response protein NST1-like [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa1G652210.1	Csa1G652210.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 64..84 scor

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa1G652210	CSPI01G31960	Wild cucumber (PI 183967)	cpicuB001

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa1G652210	Melon (DHL92) v3.6.1	cumedB035
Csa1G652210	Silver-seed gourd	carcuB0565
Csa1G652210	Silver-seed gourd	carcuB0982
Csa1G652210	Watermelon (97103) v2	cuwmbB035
Csa1G652210	Wax gourd	cuwgoB110
Csa1G652210	Cucumber (Gy14) v1	cgycuB500
Csa1G652210	Cucurbita maxima (Rimu)	cmacuB057
Csa1G652210	Cucurbita maxima (Rimu)	cmacuB085
Csa1G652210	Cucurbita moschata (Rifu)	cmocuB075
Csa1G652210	Cucurbita moschata (Rifu)	cmocuB047
Csa1G652210	Melon (DHL92) v3.5.1	cumeB043
Csa1G652210	Watermelon (97103) v1	cuwmB011
Csa1G652210	Cucurbita pepo (Zucchini)	cpecuB000
Csa1G652210	Cucurbita pepo (Zucchini)	cpecuB349
Csa1G652210	Bottle gourd (USVL1VR-Ls)	culsiB058
Csa1G652210	Cucumber (Gy14) v2	cgybcuB002