Csa1G651700 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa1G651700
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr1 : 25847659 .. 25848305 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGGGGGCCATCGTGTAGTAAGTTTGGATGGAATGAAGAATATCAATGCATTCTCACAGAACAAGAGTTGTTTGACAGTTGGGTCAAGGTATTAATTTAACAATACAATTTTATGTACTTTTATAATCTCAATCCTCAACTAATCTATTTGAACTATGTTTGTACAGAGTTATCTTCTAGTCAAAGGCCTTCTACACAAATCATTACCATATTAGGATGATCTTATGTCTTCGATAAAGATTGGGATACAGGAGCACGCTCAGAGATCTTTGTTGATGTGGGTTAAAATGTGCCAAACAATTTTAATGACGGTGTTCCCCTTGGTGATTCACATGATCAAGACATCCCAACGATGTATAGCCAAGGAGTGGATATGTCACTAGATGAGATGTTAGGAATACGTGCAGGTCGATCAAGTGAAGGAAGAAATTGTTCACGTGGAAGTAAAAGGAAACAAGGTAACCAACATTATGAAACGGTAGAGGTGATTAAGAATGCAATGAAATTTAGAAAGATCAATTAAAGGCAATTGTAGTTTGGCCAAAAGAAGAGCGTGCAACAAAGGTTGAATTGTGTGTTGAAGTCGTGAAACAACTGCAAGATATCCCTGAACTACAGAACCGGGTGAGGGTAAAGCTTATGTAA

mRNA sequence

ATGAGGGGGCCATCGTGTAGTAAGTTTGGATGGAATGAAGAATATCAATGCATTCTCACAGAACAAGAGTTGTTTGACAGTTGGGTCAAGGATGATCTTATGTCTTCGATAAAGATTGGGATACAGGAGCACGCTCAGAGATCTTTGTTGATGTGGGTTAAAATGTGCCAAACAATTTTAATGACGGTGTTCCCCTTGGTCGATCAAGTGAAGGAAGAAATTGTTCACGTGGAAGTAAAAGGAAACAAGGCAATTGTAGTTTGGCCAAAAGAAGAGCGTGCAACAAAGGTTGAATTGTGTGTTGAAGTCGTGAAACAACTGCAAGATATCCCTGAACTACAGAACCGGGTGAGGGTAAAGCTTATGTAA

Coding sequence (CDS)

ATGAGGGGGCCATCGTGTAGTAAGTTTGGATGGAATGAAGAATATCAATGCATTCTCACAGAACAAGAGTTGTTTGACAGTTGGGTCAAGGATGATCTTATGTCTTCGATAAAGATTGGGATACAGGAGCACGCTCAGAGATCTTTGTTGATGTGGGTTAAAATGTGCCAAACAATTTTAATGACGGTGTTCCCCTTGGTCGATCAAGTGAAGGAAGAAATTGTTCACGTGGAAGTAAAAGGAAACAAGGCAATTGTAGTTTGGCCAAAAGAAGAGCGTGCAACAAAGGTTGAATTGTGTGTTGAAGTCGTGAAACAACTGCAAGATATCCCTGAACTACAGAACCGGGTGAGGGTAAAGCTTATGTAA

Protein sequence

MRGPSCSKFGWNEEYQCILTEQELFDSWVKDDLMSSIKIGIQEHAQRSLLMWVKMCQTILMTVFPLVDQVKEEIVHVEVKGNKAIVVWPKEERATKVELCVEVVKQLQDIPELQNRVRVKLM*

Homology

[Close]

BLAST of Csa1G651700 vs. TrEMBL
Match: A0A0A0M343_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G651700 PE=4 SV=1)

HSP 1 Score: 250.0 bits (637), Expect = 1.5e-63
Identity = 122/122 (100.00%), Postives = 122/122 (100.00%), Query Frame = 1


Query: 1   MRGPSCSKFGWNEEYQCILTEQELFDSWVKDDLMSSIKIGIQEHAQRSLLMWVKMCQTIL 60
           MRGPSCSKFGWNEEYQCILTEQELFDSWVKDDLMSSIKIGIQEHAQRSLLMWVKMCQTIL
Sbjct: 1   MRGPSCSKFGWNEEYQCILTEQELFDSWVKDDLMSSIKIGIQEHAQRSLLMWVKMCQTIL 60

Query: 61  MTVFPLVDQVKEEIVHVEVKGNKAIVVWPKEERATKVELCVEVVKQLQDIPELQNRVRVK 120
           MTVFPLVDQVKEEIVHVEVKGNKAIVVWPKEERATKVELCVEVVKQLQDIPELQNRVRVK
Sbjct: 61  MTVFPLVDQVKEEIVHVEVKGNKAIVVWPKEERATKVELCVEVVKQLQDIPELQNRVRVK 120

Query: 121 LM 123
           LM
Sbjct: 121 LM 122

[Close]

BLAST of Csa1G651700 vs. TrEMBL
Match: A0A0A0KFW0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G116150 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 8.4e-06
Identity = 35/61 (57.38%), Postives = 43/61 (70.49%), Query Frame = 1


Query: 64  FPLVDQVKEEIVHVEVKGN--KAIVVWPKEERATKVELCVEVVKQLQDIPELQNRVRVKL 123
           +  VD +  E+   EV+ +  KAI  W KE+RAT+VEL VEVVKQLQDI EL+ R RVKL
Sbjct: 38  YEAVDVISNEM---EVRNDQLKAIANWSKEKRATEVELHVEVVKQLQDISELRTRDRVKL 95

[Close]

BLAST of Csa1G651700 vs. NCBI nr
Match: gi|700211540|gb|KGN66636.1| (hypothetical protein Csa_1G651700 [Cucumis sativus])

HSP 1 Score: 250.0 bits (637), Expect = 2.2e-63
Identity = 122/122 (100.00%), Postives = 122/122 (100.00%), Query Frame = 1


Query: 1   MRGPSCSKFGWNEEYQCILTEQELFDSWVKDDLMSSIKIGIQEHAQRSLLMWVKMCQTIL 60
           MRGPSCSKFGWNEEYQCILTEQELFDSWVKDDLMSSIKIGIQEHAQRSLLMWVKMCQTIL
Sbjct: 1   MRGPSCSKFGWNEEYQCILTEQELFDSWVKDDLMSSIKIGIQEHAQRSLLMWVKMCQTIL 60

Query: 61  MTVFPLVDQVKEEIVHVEVKGNKAIVVWPKEERATKVELCVEVVKQLQDIPELQNRVRVK 120
           MTVFPLVDQVKEEIVHVEVKGNKAIVVWPKEERATKVELCVEVVKQLQDIPELQNRVRVK
Sbjct: 61  MTVFPLVDQVKEEIVHVEVKGNKAIVVWPKEERATKVELCVEVVKQLQDIPELQNRVRVK 120

Query: 121 LM 123
           LM
Sbjct: 121 LM 122

[Close]

BLAST of Csa1G651700 vs. NCBI nr
Match: gi|659111565|ref|XP_008455793.1| (PREDICTED: uncharacterized protein At2g29880-like [Cucumis melo])

HSP 1 Score: 61.6 bits (148), Expect = 1.1e-06
Identity = 24/30 (80.00%), Postives = 28/30 (93.33%), Query Frame = 1


Query: 1  MRGPSCSKFGWNEEYQCILTEQELFDSWVK 31
          MRGPSCS FGWNEE+QCI+ E++LFDSWVK
Sbjct: 33 MRGPSCSGFGWNEEFQCIIVERDLFDSWVK 62

[Close]

BLAST of Csa1G651700 vs. NCBI nr
Match: gi|659082641|ref|XP_008441954.1| (PREDICTED: uncharacterized protein At2g29880-like [Cucumis melo])

HSP 1 Score: 61.2 bits (147), Expect = 1.4e-06
Identity = 23/30 (76.67%), Postives = 28/30 (93.33%), Query Frame = 1


Query: 1   MRGPSCSKFGWNEEYQCILTEQELFDSWVK 31
           MRGPSCS FGWNEE+QCI+ E++LFDSW+K
Sbjct: 84  MRGPSCSGFGWNEEFQCIIAERDLFDSWIK 113

[Close]

BLAST of Csa1G651700 vs. NCBI nr
Match: gi|659082641|ref|XP_008441954.1| (PREDICTED: uncharacterized protein At2g29880-like [Cucumis melo])

HSP 1 Score: 53.1 bits (126), Expect = 3.9e-04
Identity = 25/40 (62.50%), Postives = 33/40 (82.50%), Query Frame = 1


Query: 83  KAIVVWPKEERATKVELCVEVVKQLQDIPELQNRVRVKLM 123
           KAI  WPKE+RA +VE+  +VVKQLQDIP+L+++ R KLM
Sbjct: 234 KAIADWPKEKRAMEVEMRAQVVKQLQDIPKLRSQDRAKLM 273

The following BLAST results are available for this feature:

BLAST of Csa1G651700 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0M343_CUCSA	1.5e-63	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G651700 PE=4 SV=1	[more]
A0A0A0KFW0_CUCSA	8.4e-06	57.38	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G116150 PE=4 SV=1	[more]

BLAST of Csa1G651700 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700211540\|gb\|KGN66636.1\|	2.2e-63	100.00	hypothetical protein Csa_1G651700 [Cucumis sativus]	[more]
gi\|659111565\|ref\|XP_008455793.1\|	1.1e-06	80.00	PREDICTED: uncharacterized protein At2g29880-like [Cucumis melo]	[more]
gi\|659082641\|ref\|XP_008441954.1\|	1.4e-06	76.67	PREDICTED: uncharacterized protein At2g29880-like [Cucumis melo]	[more]
gi\|659082641\|ref\|XP_008441954.1\|	3.9e-04	62.50	PREDICTED: uncharacterized protein At2g29880-like [Cucumis melo]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa1G651700.1	Csa1G651700.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa1G651700	Cucurbita moschata (Rifu)	cmocuB075
Csa1G651700	Cucurbita moschata (Rifu)	cmocuB047
Csa1G651700	Melon (DHL92) v3.5.1	cumeB043
Csa1G651700	Cucurbita pepo (Zucchini)	cpecuB000
Csa1G651700	Cucurbita pepo (Zucchini)	cpecuB349
Csa1G651700	Bottle gourd (USVL1VR-Ls)	culsiB058
Csa1G651700	Cucumber (Gy14) v2	cgybcuB002
Csa1G651700	Melon (DHL92) v3.6.1	cumedB035
Csa1G651700	Silver-seed gourd	carcuB0565
Csa1G651700	Silver-seed gourd	carcuB0982
Csa1G651700	Wax gourd	cuwgoB110
Csa1G651700	Cucumber (Gy14) v1	cgycuB500
Csa1G651700	Cucurbita maxima (Rimu)	cmacuB057
Csa1G651700	Cucurbita maxima (Rimu)	cmacuB085