Csa1G638480 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa1G638480
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr1 : 25526520 .. 25527137 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTCAGATAAAAAATCCTTGTCTTCAGCTACTAAGTTTGATTGTCCAACTCCTGACTCCAATTCCCATCGAATTCCAGGATGCACTTTGGCCTTATGAGAGGTATGACCTTCCATCCTGTATGGCTATTAGCAGAATTAGGACCATGGTCTTGGGCTTGAAGAACCTATGGGTTCCCACATTCGGATGGGCCAAAGGAAGCCCACTAATAAGTTTTCCTTTAGCTAAAATAATCTTTTTATTCAAATCTTTACCAACCCCGTTAATCCCCAAATTGGGTCTTAAAAGGCTAAAGCATGCTGGGCCAACTAAAGACAGGCTAAAGCGCCACAGATCAGACTTAATTGTGCTTGACTATGACCGGACGCAGAATCTCATCGGAAAAGAGAAATCCAAATGGCTCACAATGCAGCAGACTGGGATGTAAGCATCATCAAAACCTTTGGCCTTGAAACTCACCTCCTTCAGCCAATCTGAACTAAAGAAGGGAGATTCTACTTCATCTAACCCTCTGCACCAACCAACCAACGAAGTTATGAACTCCTCTATCCTTAAAATGGAGGAACATCGAGCAATGAAACCTAGGAGGGATAAGCACCAGAGTGCTGAAACCTAG

mRNA sequence

ATGGGTCAGATAAAAAATCCTTGTCTTCAGCTACTAAGTTTGATTGTCCAACTCCTGACTCCAATTCCCATCGAATTCCAGGATGCACTTTGGCCTTATGAGAGGTATGACCTTCCATCCTGTATGGCTATTAGCAGAATTAGGACCATGGTCTTGGGCTTGAAGAACCTATGGGTTCCCACATTCGGATGGGCCAAAGGAAGCCCACTAATAAGTTTTCCTTTAGCTAAAATAATCTTTTTATTCAAATCTTTACCAACCCCGTTAATCCCCAAATTGGGTCTTAAAAGGCTAAAGCATGCTGGGCCAACTAAAGACAGGCTAAAGCGCCACAGATCAGACTTAATTGTGCTTGACTATGACCGGACGCAGAATCTCATCGGAAAAGAGAAATCCAAATGGCTCACAATGCAGCAGACTGGGATCCAATCTGAACTAAAGAAGGGAGATTCTACTTCATCTAACCCTCTGCACCAACCAACCAACGAAGTTATGAACTCCTCTATCCTTAAAATGGAGGAACATCGAGCAATGAAACCTAGGAGGGATAAGCACCAGAGTGCTGAAACCTAG

Coding sequence (CDS)

ATGGGTCAGATAAAAAATCCTTGTCTTCAGCTACTAAGTTTGATTGTCCAACTCCTGACTCCAATTCCCATCGAATTCCAGGATGCACTTTGGCCTTATGAGAGGTATGACCTTCCATCCTGTATGGCTATTAGCAGAATTAGGACCATGGTCTTGGGCTTGAAGAACCTATGGGTTCCCACATTCGGATGGGCCAAAGGAAGCCCACTAATAAGTTTTCCTTTAGCTAAAATAATCTTTTTATTCAAATCTTTACCAACCCCGTTAATCCCCAAATTGGGTCTTAAAAGGCTAAAGCATGCTGGGCCAACTAAAGACAGGCTAAAGCGCCACAGATCAGACTTAATTGTGCTTGACTATGACCGGACGCAGAATCTCATCGGAAAAGAGAAATCCAAATGGCTCACAATGCAGCAGACTGGGATCCAATCTGAACTAAAGAAGGGAGATTCTACTTCATCTAACCCTCTGCACCAACCAACCAACGAAGTTATGAACTCCTCTATCCTTAAAATGGAGGAACATCGAGCAATGAAACCTAGGAGGGATAAGCACCAGAGTGCTGAAACCTAG

Protein sequence

MGQIKNPCLQLLSLIVQLLTPIPIEFQDALWPYERYDLPSCMAISRIRTMVLGLKNLWVPTFGWAKGSPLISFPLAKIIFLFKSLPTPLIPKLGLKRLKHAGPTKDRLKRHRSDLIVLDYDRTQNLIGKEKSKWLTMQQTGIQSELKKGDSTSSNPLHQPTNEVMNSSILKMEEHRAMKPRRDKHQSAET*

Homology

[Close]

BLAST of Csa1G638480 vs. TrEMBL
Match: A0A0A0M317_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G638480 PE=4 SV=1)

HSP 1 Score: 387.1 bits (993), Expect = 1.2e-104
Identity = 190/190 (100.00%), Postives = 190/190 (100.00%), Query Frame = 1


Query: 1   MGQIKNPCLQLLSLIVQLLTPIPIEFQDALWPYERYDLPSCMAISRIRTMVLGLKNLWVP 60
           MGQIKNPCLQLLSLIVQLLTPIPIEFQDALWPYERYDLPSCMAISRIRTMVLGLKNLWVP
Sbjct: 1   MGQIKNPCLQLLSLIVQLLTPIPIEFQDALWPYERYDLPSCMAISRIRTMVLGLKNLWVP 60

Query: 61  TFGWAKGSPLISFPLAKIIFLFKSLPTPLIPKLGLKRLKHAGPTKDRLKRHRSDLIVLDY 120
           TFGWAKGSPLISFPLAKIIFLFKSLPTPLIPKLGLKRLKHAGPTKDRLKRHRSDLIVLDY
Sbjct: 61  TFGWAKGSPLISFPLAKIIFLFKSLPTPLIPKLGLKRLKHAGPTKDRLKRHRSDLIVLDY 120

Query: 121 DRTQNLIGKEKSKWLTMQQTGIQSELKKGDSTSSNPLHQPTNEVMNSSILKMEEHRAMKP 180
           DRTQNLIGKEKSKWLTMQQTGIQSELKKGDSTSSNPLHQPTNEVMNSSILKMEEHRAMKP
Sbjct: 121 DRTQNLIGKEKSKWLTMQQTGIQSELKKGDSTSSNPLHQPTNEVMNSSILKMEEHRAMKP 180

Query: 181 RRDKHQSAET 191
           RRDKHQSAET
Sbjct: 181 RRDKHQSAET 190

[Close]

BLAST of Csa1G638480 vs. NCBI nr
Match: gi|700211505|gb|KGN66601.1| (hypothetical protein Csa_1G638480 [Cucumis sativus])

HSP 1 Score: 387.1 bits (993), Expect = 1.8e-104
Identity = 190/190 (100.00%), Postives = 190/190 (100.00%), Query Frame = 1


Query: 1   MGQIKNPCLQLLSLIVQLLTPIPIEFQDALWPYERYDLPSCMAISRIRTMVLGLKNLWVP 60
           MGQIKNPCLQLLSLIVQLLTPIPIEFQDALWPYERYDLPSCMAISRIRTMVLGLKNLWVP
Sbjct: 1   MGQIKNPCLQLLSLIVQLLTPIPIEFQDALWPYERYDLPSCMAISRIRTMVLGLKNLWVP 60

Query: 61  TFGWAKGSPLISFPLAKIIFLFKSLPTPLIPKLGLKRLKHAGPTKDRLKRHRSDLIVLDY 120
           TFGWAKGSPLISFPLAKIIFLFKSLPTPLIPKLGLKRLKHAGPTKDRLKRHRSDLIVLDY
Sbjct: 61  TFGWAKGSPLISFPLAKIIFLFKSLPTPLIPKLGLKRLKHAGPTKDRLKRHRSDLIVLDY 120

Query: 121 DRTQNLIGKEKSKWLTMQQTGIQSELKKGDSTSSNPLHQPTNEVMNSSILKMEEHRAMKP 180
           DRTQNLIGKEKSKWLTMQQTGIQSELKKGDSTSSNPLHQPTNEVMNSSILKMEEHRAMKP
Sbjct: 121 DRTQNLIGKEKSKWLTMQQTGIQSELKKGDSTSSNPLHQPTNEVMNSSILKMEEHRAMKP 180

Query: 181 RRDKHQSAET 191
           RRDKHQSAET
Sbjct: 181 RRDKHQSAET 190

The following BLAST results are available for this feature:

BLAST of Csa1G638480 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0M317_CUCSA	1.2e-104	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G638480 PE=4 SV=1	[more]

BLAST of Csa1G638480 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700211505\|gb\|KGN66601.1\|	1.8e-104	100.00	hypothetical protein Csa_1G638480 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0016787	hydrolase activity

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
CU117571	cucumber EST collection version 3.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa1G638480.1	Csa1G638480.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
CU117571	CU117571	transcribed_cluster

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa1G638480	CSPI01G31570	Wild cucumber (PI 183967)	cpicuB001

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa1G638480	Silver-seed gourd	carcuB0565
Csa1G638480	Silver-seed gourd	carcuB0982
Csa1G638480	Watermelon (97103) v2	cuwmbB047
Csa1G638480	Wax gourd	cuwgoB096
Csa1G638480	Cucumber (Gy14) v1	cgycuB500
Csa1G638480	Cucurbita maxima (Rimu)	cmacuB057
Csa1G638480	Cucurbita maxima (Rimu)	cmacuB085
Csa1G638480	Cucurbita moschata (Rifu)	cmocuB075
Csa1G638480	Cucurbita moschata (Rifu)	cmocuB047
Csa1G638480	Melon (DHL92) v3.5.1	cumeB041
Csa1G638480	Watermelon (Charleston Gray)	cuwcgB046
Csa1G638480	Watermelon (97103) v1	cuwmB016
Csa1G638480	Cucurbita pepo (Zucchini)	cpecuB000
Csa1G638480	Cucurbita pepo (Zucchini)	cpecuB349
Csa1G638480	Bottle gourd (USVL1VR-Ls)	culsiB058
Csa1G638480	Cucumber (Gy14) v2	cgybcuB002
Csa1G638480	Melon (DHL92) v3.6.1	cumedB033