Csa1G637940 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa1G637940
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr1 : 25469760 .. 25469963 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCATTTGCAAAGTCAGAAACAATTACAAGACTTAGAGCTTAAAGTGGACAATGCAAGTACTCATCATCAAGCTCAGTCTGAAGTACTCAAGGCTGAGATGCAAGAGCTCAGATTGCATAACCAAGAGCTCAAATCGAAGAATCTAAAGCTCAAGGCTCAGAATAAGGTAATCATGAGGATGATAGAGCAAACCGCCAAGTAG

mRNA sequence

ATGCATTTGCAAAGTCAGAAACAATTACAAGACTTAGAGCTTAAAGTGGACAATGCAAGTACTCATCATCAAGCTCAGTCTGAAGTACTCAAGGCTGAGATGCAAGAGCTCAGATTGCATAACCAAGAGCTCAAATCGAAGAATCTAAAGCTCAAGGCTCAGAATAAGGTAATCATGAGGATGATAGAGCAAACCGCCAAGTAG

Coding sequence (CDS)

ATGCATTTGCAAAGTCAGAAACAATTACAAGACTTAGAGCTTAAAGTGGACAATGCAAGTACTCATCATCAAGCTCAGTCTGAAGTACTCAAGGCTGAGATGCAAGAGCTCAGATTGCATAACCAAGAGCTCAAATCGAAGAATCTAAAGCTCAAGGCTCAGAATAAGGTAATCATGAGGATGATAGAGCAAACCGCCAAGTAG

Protein sequence

MHLQSQKQLQDLELKVDNASTHHQAQSEVLKAEMQELRLHNQELKSKNLKLKAQNKVIMRMIEQTAK*

Homology

[Close]

BLAST of Csa1G637940 vs. TrEMBL
Match: A0A0A0M313_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G637940 PE=4 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 4.3e-28
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 1


Query: 1  MHLQSQKQLQDLELKVDNASTHHQAQSEVLKAEMQELRLHNQELKSKNLKLKAQNKVIMR 60
          MHLQSQKQLQDLELKVDNASTHHQAQSEVLKAEMQELRLHNQELKSKNLKLKAQNKVIMR
Sbjct: 1  MHLQSQKQLQDLELKVDNASTHHQAQSEVLKAEMQELRLHNQELKSKNLKLKAQNKVIMR 60

Query: 61 MIEQTAK 68
          MIEQTAK
Sbjct: 61 MIEQTAK 67

[Close]

BLAST of Csa1G637940 vs. TrEMBL
Match: A0A0A0KJB9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G049020 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 1.8e-10
Identity = 38/67 (56.72%), Postives = 47/67 (70.15%), Query Frame = 1


Query: 1   MHLQSQKQLQDLELKVDNASTHHQAQSEVLKAEMQELRLHNQELKSKNLKLKAQNKVIMR 60
           MH QSQKQL+D +LK+DN + HHQ Q E LKA+MQEL L  QE       LK QN+VIM 
Sbjct: 78  MHFQSQKQLEDFKLKLDNKNHHHQVQIEGLKAKMQELILQEQE-------LKVQNQVIME 137

Query: 61  MIEQTAK 68
           M++QT +
Sbjct: 138 MVKQTTR 137

[Close]

BLAST of Csa1G637940 vs. NCBI nr
Match: gi|700211500|gb|KGN66596.1| (hypothetical protein Csa_1G637940 [Cucumis sativus])

HSP 1 Score: 131.3 bits (329), Expect = 6.2e-28
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 1


Query: 1  MHLQSQKQLQDLELKVDNASTHHQAQSEVLKAEMQELRLHNQELKSKNLKLKAQNKVIMR 60
          MHLQSQKQLQDLELKVDNASTHHQAQSEVLKAEMQELRLHNQELKSKNLKLKAQNKVIMR
Sbjct: 1  MHLQSQKQLQDLELKVDNASTHHQAQSEVLKAEMQELRLHNQELKSKNLKLKAQNKVIMR 60

Query: 61 MIEQTAK 68
          MIEQTAK
Sbjct: 61 MIEQTAK 67

[Close]

BLAST of Csa1G637940 vs. NCBI nr
Match: gi|700194476|gb|KGN49653.1| (hypothetical protein Csa_5G049020 [Cucumis sativus])

HSP 1 Score: 72.8 bits (177), Expect = 2.6e-10
Identity = 38/67 (56.72%), Postives = 47/67 (70.15%), Query Frame = 1


Query: 1   MHLQSQKQLQDLELKVDNASTHHQAQSEVLKAEMQELRLHNQELKSKNLKLKAQNKVIMR 60
           MH QSQKQL+D +LK+DN + HHQ Q E LKA+MQEL L  QE       LK QN+VIM 
Sbjct: 78  MHFQSQKQLEDFKLKLDNKNHHHQVQIEGLKAKMQELILQEQE-------LKVQNQVIME 137

Query: 61  MIEQTAK 68
           M++QT +
Sbjct: 138 MVKQTTR 137

The following BLAST results are available for this feature:

BLAST of Csa1G637940 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0M313_CUCSA	4.3e-28	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G637940 PE=4 SV=1	[more]
A0A0A0KJB9_CUCSA	1.8e-10	56.72	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G049020 PE=4 SV=1	[more]

BLAST of Csa1G637940 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700211500\|gb\|KGN66596.1\|	6.2e-28	100.00	hypothetical protein Csa_1G637940 [Cucumis sativus]	[more]
gi\|700194476\|gb\|KGN49653.1\|	2.6e-10	56.72	hypothetical protein Csa_5G049020 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa1G637940.1	Csa1G637940.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 27..54 scor

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa1G637940	CSPI01G31520	Wild cucumber (PI 183967)	cpicuB001

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa1G637940	Cucumber (Gy14) v1	cgycuB500
Csa1G637940	Cucurbita maxima (Rimu)	cmacuB057
Csa1G637940	Cucurbita maxima (Rimu)	cmacuB085
Csa1G637940	Cucurbita moschata (Rifu)	cmocuB075
Csa1G637940	Cucurbita moschata (Rifu)	cmocuB047
Csa1G637940	Melon (DHL92) v3.5.1	cumeB041
Csa1G637940	Watermelon (Charleston Gray)	cuwcgB046
Csa1G637940	Watermelon (97103) v1	cuwmB016
Csa1G637940	Cucurbita pepo (Zucchini)	cpecuB000
Csa1G637940	Cucurbita pepo (Zucchini)	cpecuB349
Csa1G637940	Bottle gourd (USVL1VR-Ls)	culsiB058
Csa1G637940	Bottle gourd (USVL1VR-Ls)	culsiB077
Csa1G637940	Cucumber (Gy14) v2	cgybcuB002
Csa1G637940	Melon (DHL92) v3.6.1	cumedB033
Csa1G637940	Silver-seed gourd	carcuB0565
Csa1G637940	Silver-seed gourd	carcuB0982
Csa1G637940	Watermelon (97103) v2	cuwmbB047
Csa1G637940	Wax gourd	cuwgoB096