Csa1G633400 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa1G633400
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionR3H and coiled-coil domain-containing protein 1-like; contains IPR012677 (Nucleotide-binding, alpha-beta plait)
LocationChr1 : 25338824 .. 25341534 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGAGCAGGAGAAGTAAAGGAATTGTATCATCCTCATGCCAAGCTATATACTACTTAGGAAAGGAAGTCGTGTCATACATGTCAGTAAAACACTGGCCCAAATATATTTTGGTGTATAGCCAATTGATACTTATCCTACAAAGATTTGATGATGCTTGTGGTAGAAAATAGTGCAATTTAATTACAGCAGTTATAGTGTTATTTTAACACAAGTGATTATTTTTCAGATTGGGAAGCTATTGCAGATCGCCCACCAAATGAGTTGCTATCCTTGGAAAGTGAACCTGACAAACCAGAACAGTCAGTCAAAGAAATGAAAGCCCAAACCCCTAGACGACGTGGGAGGGGAACTTTTTCATATAATAAACACGAGTTATATAGTGATAAGCTATCTGATTCTTCAACTACGGATGATACAAATGAAGAAGAGTCTTCTCATATGATTGAGGGCCGCAGGGAGCTAAAAAGTGGTAAGCCTGACACATAATTTACAAATATGATAAGGAAGGAAATTCAATGTGAATTGTTTCCTAGATCACTGGTGCAATTCAAAGTTACGTAGTTGTTGCATAAACACTGGTTAGGCCTTCAGGTTATGGAATCGTACAGGAACAACATATTTACCTAAAACGGATAAATCCTTTCTTAGTCCCTGAAGTTTCACCAATATTTTCTGGTTTTTTTAAGTTATCAGAACCGTTATGAAAGATTCAAATTGACCATTAGTTTTTTGGATTATTTGTTTAAGTTAGAACATTGACATAATAATACTGCAATTGTTTTGGGCTTCTAAATAGGTAAACTTCATTGATGTTTGTGCACATTGAATCATGATTTTCAACCAAGAGATAAGCATTATTTTAAAGAAAATTTTCGTTATGTGAATCCAGCACAATATGGTACCCAACATGTTCTTGTTCTGGCGGACTTTCCACCAAGTACCAAAACAATAGATCTTGAAAGGCTACTTGGGAATTTCATGAATTCTGGAGTTGTCATTCGCTGGGTCAATGATACAGTTGCACTTGCAGTATTTCAGACACCATCGACTGGTAACTTCCGTAAAACTAGATTTTCATTTTTGGGAAATCTTGTAGGACAGTTTTGATCTTTAGGCTTGGACTTCTTATCTTTTTTTCTTAAACCTTATGTTGTTTCAAAACTGTTATTTTCTATCTCGTTTTATGTTCTGCAATTGACGATACAATAAATGGCCAAGTCAGTAGATATTCGGTCATGTTTACTTTTGTTATGTTGGTTACTTCTTACTACTATCCTGTGTCATGTATGTTATTTTTCTATTTGGCCTAGTTCAGGATAACTATTGAAAAAATAGTACTTTTAAGTGGAGACACTTTGAACGCTTTTGGACGAGCAAATAATTAAGTGCTTCTTCTTGAAAAACTAGAAGTGCTTTCAAAATTCTTAAGATCACTTTTGGTTACTAATCAAACACTATGGGAACTTTAAAAAGGTCTTGTGATGCCCGAAAAAACTTTTTACCCTTACAAAACATATCCTAAATTCCCCCTTAATCGTAGTCTTAGAAATTTCTTGGGTTATGTGGAAATCGCTTTACTTTCTCCATGTGGTGTCTCCCATCAAATGCCCGAATTTTCATAATTATGTCAAATCATTATCTTGTGTTGCATGCTGAAATCAGAATATTGATGAAATAGTTTCATGCATTAAAATTTAAGTTATTTCAATAACTACCTTGATTTTCTAATGCAGCACTTGAAGTTCTCAATCATGTTAGATGTCCTTTCACCTTACGTCAACTTGATGAAAATGATACTCTTTTGAGCTCGATTCCACCAAGAGGTATGAGCTTCTTCTTCAGTTTGCTAGTAATTAGTATTTTAATAAAAGCATTCTCTTGTCTTCTTATGGACATCATTTCATTTACGTCTATAGAGGTGTGTGTTGTCATCGAGTATCTTTCATGGCTGGTGTTTAGGCACAACATAGAAAAAATGAAGATTACTTTCTATAGGAAACTATTTTTATAAAACTGGGGATGATTGGTCCCACAAGTTCTCTAAATGAAGAATAGTTGCAAAATATTGTTAAACAAAGAAGCCAAAAAGCTTTTGAAATCCCAAAATTCCTTATCATCCATCCCTATGTCTACAAAAGGTTCTATTTCTTTCGTTAAATCTCCAATAACAGTTACTTGGTGAAGATTTAATGTTGGTTTATTATGGAAATGCCAGATCTTGTGCCTCCAAAACAAAGGCCAAAGACATCGGCTAGAACTGCACAGCGCCTGATTGCTCAAGGAATGGGATTGAAGTTGCCAAATTCCACTACTTCCTTCGGGTCCAAAGAACTCAGGAAACAAGAAGAAGACCGGAGGAACCGCATTGTCTCGAGGCAAAAACTGAGAGATGAAGCTTGGGGAGATGATGATCCAAGTTAGTCATTTTTACTTTTTTTCTTGAACAGATGGATATTGTTTATCTGAAGAACGATAACCATCAAGACAAACCCCAAACACAGCCACTGTTAAAATGCTCAACCTTTGTTTCTTTCTTTGTTTGCTCCCAATGGCTTACAGTATTTACCCCCATCCATCGTGTGAGTTTTATTAAAGAAACATCAAAAAACCTCATTCTTGTGGCTGCATTATTCTGTCTTTGGATTCATTGCTCTGTAAAACTTGATTACTTGACACTGTACAGTCCTTAAAACTTGATATGGAAAAGT

mRNA sequence

ATGAGAGCAGGAGAATGTTATTTTAACACAAGTGATTATTTTTCAGATTGGGAAGCTATTGCAGATCGCCCACCAAATGAGTTGCTATCCTTGGAAAGTGAACCTGACAAACCAGAACAGTCAGTCAAAGAAATGAAAGCCCAAACCCCTAGACGACGTGGGAGGGGAACTTTTTCATATAATAAACACGAGTTATATAGTGATAAGCTATCTGATTCTTCAACTACGGATGATACAAATGAAGAAGAGTCTTCTCATATGATTGAGGGCCGCAGGGAGCTAAAAAGTGCACAATATGGTACCCAACATGTTCTTGTTCTGGCGGACTTTCCACCAAGTACCAAAACAATAGATCTTGAAAGGCTACTTGGGAATTTCATGAATTCTGGAGTTGTCATTCGCTGGGTCAATGATACAGTTGCACTTGCAGTATTTCAGACACCATCGACTGCACTTGAAGTTCTCAATCATGTTAGATGTCCTTTCACCTTACGTCAACTTGATGAAAATGATACTCTTTTGAGCTCGATTCCACCAAGAGATCTTGTGCCTCCAAAACAAAGGCCAAAGACATCGGCTAGAACTGCACAGCGCCTGATTGCTCAAGGAATGGGATTGAAGTTGCCAAATTCCACTACTTCCTTCGGGTCCAAAGAACTCAGGAAACAAGAAGAAGACCGGAGGAACCGCATTGTCTCGAGGCAAAAACTGAGAGATGAAGCTTGGGGAGATGATGATCCAAGTTAG

Coding sequence (CDS)

ATGAGAGCAGGAGAATGTTATTTTAACACAAGTGATTATTTTTCAGATTGGGAAGCTATTGCAGATCGCCCACCAAATGAGTTGCTATCCTTGGAAAGTGAACCTGACAAACCAGAACAGTCAGTCAAAGAAATGAAAGCCCAAACCCCTAGACGACGTGGGAGGGGAACTTTTTCATATAATAAACACGAGTTATATAGTGATAAGCTATCTGATTCTTCAACTACGGATGATACAAATGAAGAAGAGTCTTCTCATATGATTGAGGGCCGCAGGGAGCTAAAAAGTGCACAATATGGTACCCAACATGTTCTTGTTCTGGCGGACTTTCCACCAAGTACCAAAACAATAGATCTTGAAAGGCTACTTGGGAATTTCATGAATTCTGGAGTTGTCATTCGCTGGGTCAATGATACAGTTGCACTTGCAGTATTTCAGACACCATCGACTGCACTTGAAGTTCTCAATCATGTTAGATGTCCTTTCACCTTACGTCAACTTGATGAAAATGATACTCTTTTGAGCTCGATTCCACCAAGAGATCTTGTGCCTCCAAAACAAAGGCCAAAGACATCGGCTAGAACTGCACAGCGCCTGATTGCTCAAGGAATGGGATTGAAGTTGCCAAATTCCACTACTTCCTTCGGGTCCAAAGAACTCAGGAAACAAGAAGAAGACCGGAGGAACCGCATTGTCTCGAGGCAAAAACTGAGAGATGAAGCTTGGGGAGATGATGATCCAAGTTAG

Protein sequence

MRAGECYFNTSDYFSDWEAIADRPPNELLSLESEPDKPEQSVKEMKAQTPRRRGRGTFSYNKHELYSDKLSDSSTTDDTNEEESSHMIEGRRELKSAQYGTQHVLVLADFPPSTKTIDLERLLGNFMNSGVVIRWVNDTVALAVFQTPSTALEVLNHVRCPFTLRQLDENDTLLSSIPPRDLVPPKQRPKTSARTAQRLIAQGMGLKLPNSTTSFGSKELRKQEEDRRNRIVSRQKLRDEAWGDDDPS*
Homology
[Close]
BLAST of Csa1G633400 vs. Swiss-Prot
Match: R3HCL_HUMAN (Coiled-coil domain-containing protein R3HCC1L OS=Homo sapiens GN=R3HCC1L PE=1 SV=2)

HSP 1 Score: 79.7 bits (195), Expect = 4.9e-14
Identity = 59/204 (28.92%), Postives = 95/204 (46.57%), Query Frame = 1 

Query: 50  PRRRGRGTFSYNKHELYSDKLS-DSSTTDDTNEEESSHMIEGRRELKSAQYGTQHVLVLA 109
           PR    G   + K E +  +LS ++ + +   E  S +      ++  +     HV+ + 
Sbjct: 590 PRLLQEGILMHIKPENHCSELSGNTKSRESIQEPRSDYYNHEVPDIDLSDCEFPHVIEIY 649

Query: 110 DFPPSTKTIDLERLLGNFMNSGVVIRWVNDTVALAVFQTPSTALEVLNHVRCPFTLRQLD 169
           DFP    T DL R+  ++   G  I+WV+DT AL VF +P TA + L        +R L 
Sbjct: 650 DFPQEFHTEDLLRVFCSYQKKGFDIKWVDDTHALGVFSSPITARDALGIKHTMVKIRPLS 709

Query: 170 ENDTLLSSIPPRD----LVPPKQRPKTSARTAQRLIAQGMGLKLPNSTTSFGSKELRKQE 229
           +  T  +    R     L P K+RP+TSA  A+RL+   +G++   S T   ++  + QE
Sbjct: 710 Q-ATRAAKAKARAYAEFLQPAKERPETSAALARRLVISALGVRSKQSKTEREAELKKLQE 769

Query: 230 EDRRNRIVSRQKLRDEAWGDDDPS 249
              R R+ ++Q  R++ W   D S
Sbjct: 770 ARERKRLEAKQ--REDIWEGRDQS 790

[Close]
BLAST of Csa1G633400 vs. Swiss-Prot
Match: R3HCL_MOUSE (Coiled-coil domain-containing protein R3HCC1L OS=Mus musculus GN=R3hcc1l PE=1 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 1.4e-13
Identity = 54/151 (35.76%), Postives = 78/151 (51.66%), Query Frame = 1 

Query: 103 HVLVLADFPPSTKTIDLERLLGNFMNSGVVIRWVNDTVALAVFQTPSTALEVLNHVRCPF 162
           HV+ + DFP   +T DL R+  ++   G  I+WV+DT AL VF +P TA + L       
Sbjct: 627 HVIEIYDFPQEFRTEDLLRIFCSYQKKGFDIKWVDDTHALGVFASPITARDALGTKHTMV 686

Query: 163 TLRQLDENDTLLSSIPPRD----LVPPKQRPKTSARTAQRLIAQGMGLKLPNSTTSFGSK 222
            +R L +  T  +    R     L P K+RP+TSA  A+RL+   +G++   S T     
Sbjct: 687 KIRPLSQ-ATRAAKAKARACAEFLQPAKERPETSAALARRLVISALGVRSKQSKTE-REA 746

Query: 223 ELRKQEEDR-RNRIVSRQKLRDEAWGDDDPS 249
           ELRK +E R R R+ ++Q  R++ W   D S
Sbjct: 747 ELRKLQEARERKRLEAKQ--REDIWEGRDQS 773

[Close]
BLAST of Csa1G633400 vs. Swiss-Prot
Match: R3HC1_MOUSE (R3H and coiled-coil domain-containing protein 1 OS=Mus musculus GN=R3hcc1 PE=1 SV=2)

HSP 1 Score: 64.7 bits (156), Expect = 1.6e-09
Identity = 37/108 (34.26%), Postives = 57/108 (52.78%), Query Frame = 1 

Query: 103 HVLVLADFPPSTKTIDLERLLGNFMNSGVVIRWVNDTVALAVFQTPSTALEVLNHVRCPF 162
           H++ + DF P+ KT DL      F   G  I+WV+DT A+ +F  P++ALE L       
Sbjct: 473 HLVEIYDFKPTLKTEDLLATFSEFQEKGFRIQWVDDTHAIGIFPCPASALEALAKDFSVL 532

Query: 163 TLRQLDE---NDTLLSSIPPRDLVPPKQRPKTSARTAQRLIAQGMGLK 208
            +R L +      L +   P+ L   K+RP+T +  A+RL+A+ +GL+
Sbjct: 533 KIRPLTQGTKQSKLKALQRPKFLRLSKERPQTDSAVARRLVARALGLQ 580

[Close]
BLAST of Csa1G633400 vs. Swiss-Prot
Match: R3HC1_HUMAN (R3H and coiled-coil domain-containing protein 1 OS=Homo sapiens GN=R3HCC1 PE=1 SV=2)

HSP 1 Score: 63.9 bits (154), Expect = 2.8e-09
Identity = 49/180 (27.22%), Postives = 82/180 (45.56%), Query Frame = 1 

Query: 31  LESEPDKPEQSVKEMKAQTPRRRGRGTFSYNKHELYSDKLSDSSTTDDTNEEESSHMIEG 90
           L +E ++ E+ V+E         G  + S + +     +++D+ T  +   E+       
Sbjct: 294 LVAEEEEDEEEVEE--------DGPSSCSEDDYSELLQEITDNLTKKEIQIEKIHLDTSS 353

Query: 91  RRELKSAQYGTQHVLVLADFPPSTKTIDLERLLGNFMNSGVVIRWVNDTVALAVFQTPST 150
             E    +    HV+ + DF P+ KT DL      F   G  I+WV+DT AL +F   ++
Sbjct: 354 FVEELPGEKDLAHVVEIYDFEPALKTEDLLATFSEFQEKGFRIQWVDDTHALGIFPCLAS 413

Query: 151 ALEVLNHVRCPFTLRQLDEN---DTLLSSIPPRDLVPPKQRPKTSARTAQRLIAQGMGLK 208
           A E L        +R L +      L +   P+ L   K+RP+T+A  A+RL+A+ +GL+
Sbjct: 414 AAEALTREFSVLKIRPLTQGTKQSKLKALQRPKLLRLVKERPQTNATVARRLVARALGLQ 465

[Close]
BLAST of Csa1G633400 vs. TrEMBL
Match: A0A0A0LZY5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G633400 PE=4 SV=1)

HSP 1 Score: 501.1 bits (1289), Expect = 7.6e-139
Identity = 248/248 (100.00%), Postives = 248/248 (100.00%), Query Frame = 1 

Query: 1   MRAGECYFNTSDYFSDWEAIADRPPNELLSLESEPDKPEQSVKEMKAQTPRRRGRGTFSY 60
           MRAGECYFNTSDYFSDWEAIADRPPNELLSLESEPDKPEQSVKEMKAQTPRRRGRGTFSY
Sbjct: 1   MRAGECYFNTSDYFSDWEAIADRPPNELLSLESEPDKPEQSVKEMKAQTPRRRGRGTFSY 60

Query: 61  NKHELYSDKLSDSSTTDDTNEEESSHMIEGRRELKSAQYGTQHVLVLADFPPSTKTIDLE 120
           NKHELYSDKLSDSSTTDDTNEEESSHMIEGRRELKSAQYGTQHVLVLADFPPSTKTIDLE
Sbjct: 61  NKHELYSDKLSDSSTTDDTNEEESSHMIEGRRELKSAQYGTQHVLVLADFPPSTKTIDLE 120

Query: 121 RLLGNFMNSGVVIRWVNDTVALAVFQTPSTALEVLNHVRCPFTLRQLDENDTLLSSIPPR 180
           RLLGNFMNSGVVIRWVNDTVALAVFQTPSTALEVLNHVRCPFTLRQLDENDTLLSSIPPR
Sbjct: 121 RLLGNFMNSGVVIRWVNDTVALAVFQTPSTALEVLNHVRCPFTLRQLDENDTLLSSIPPR 180

Query: 181 DLVPPKQRPKTSARTAQRLIAQGMGLKLPNSTTSFGSKELRKQEEDRRNRIVSRQKLRDE 240
           DLVPPKQRPKTSARTAQRLIAQGMGLKLPNSTTSFGSKELRKQEEDRRNRIVSRQKLRDE
Sbjct: 181 DLVPPKQRPKTSARTAQRLIAQGMGLKLPNSTTSFGSKELRKQEEDRRNRIVSRQKLRDE 240

Query: 241 AWGDDDPS 249
           AWGDDDPS
Sbjct: 241 AWGDDDPS 248

[Close]
BLAST of Csa1G633400 vs. TrEMBL
Match: W9QVW8_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_017132 PE=4 SV=1)

HSP 1 Score: 297.0 bits (759), Expect = 2.2e-77
Identity = 146/231 (63.20%), Postives = 181/231 (78.35%), Query Frame = 1 

Query: 16  DWEAIADRPPNELLSLESEPDKPEQSVKEMKAQTPRRRGRGTFSYNKHELYSDKLSDSST 75
           DWEAIADR P+ELLS +  P   E S+++ K   P++RGRGTFSY KHELYSD LS  + 
Sbjct: 138 DWEAIADRTPDELLSSQCLPGVSELSLQDSKTNAPKQRGRGTFSYKKHELYSDHLSKKTV 197

Query: 76  TDDTNEEESSHMIEGRRELKSAQYGTQHVLVLADFPPSTKTIDLERLLGNFMNSGVVIRW 135
           +D T +E+  H +E   +++ + YGT+HVL+LADFPPST+TIDLE+L  +F + GVVIRW
Sbjct: 198 SDYTEDEDVGHDLESNTDVRKSIYGTRHVLILADFPPSTRTIDLEKLFDDFRDRGVVIRW 257

Query: 136 VNDTVALAVFQTPSTALEVLNHVRCPFTLRQLDENDTLLSSIPPRDLVPPKQRPKTSART 195
           +NDT ALAVF+TP  ALE  N V CPFT+R LDE D L+SSI  +DL PP+QRPKTSA T
Sbjct: 258 INDTTALAVFRTPPIALEASNRVSCPFTVRILDEADDLISSIQAKDLEPPRQRPKTSATT 317

Query: 196 AQRLIAQGMGLKLPNSTTSFGSKELRKQEEDRRNRIVSRQKLRDEAWGDDD 247
           AQRLIAQGMGLKL  ++ SFGS+ELRKQE DRRNRIV+RQKL+++AWG DD
Sbjct: 318 AQRLIAQGMGLKL--TSASFGSRELRKQEGDRRNRIVTRQKLKEDAWGGDD 366

[Close]
BLAST of Csa1G633400 vs. TrEMBL
Match: M5W335_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010210mg PE=4 SV=1)

HSP 1 Score: 296.2 bits (757), Expect = 3.7e-77
Identity = 146/231 (63.20%), Postives = 185/231 (80.09%), Query Frame = 1 

Query: 16  DWEAIADRPPNELLSLESEPDKPEQSVKEMKAQTPRRRGRGTFSYNKHELYSDKLSDSST 75
           DWEAIADR P+ELLS +  P+  + S+++ K QTP+RRGRGTFSY K ELYSD++ D   
Sbjct: 30  DWEAIADREPDELLSSQVLPEVSKLSLEDTKGQTPKRRGRGTFSYKKDELYSDQIPDKLI 89

Query: 76  TDDTNEEESSHMIEGRRELKSAQYGTQHVLVLADFPPSTKTIDLERLLGNFMNSGVVIRW 135
            D   +E+  H +EG  +++++++GTQHVLVLADFPPST TI+LE+L  +F + GVVIRW
Sbjct: 90  IDMREDEDVCHNLEGDPKIRNSKFGTQHVLVLADFPPSTTTIELEKLFQDFGDRGVVIRW 149

Query: 136 VNDTVALAVFQTPSTALEVLNHVRCPFTLRQLDENDTLLSSIPPRDLVPPKQRPKTSART 195
           VNDTVALAVFQTPS ALE  N +RC   +R LDENDTLLSSI P+DL PP+QRP+TS RT
Sbjct: 150 VNDTVALAVFQTPSIALEARNCIRCAMKVRVLDENDTLLSSISPKDLEPPRQRPQTSVRT 209

Query: 196 AQRLIAQGMGLKLPNSTTSFGSKELRKQEEDRRNRIVSRQKLRDEAWGDDD 247
           AQRLIA GMGLKLP  +T+FGS +L+KQE+DR++RIV RQKL+D+AWG D+
Sbjct: 210 AQRLIAHGMGLKLP--STAFGSVDLKKQEDDRKSRIVMRQKLKDDAWGTDE 258

[Close]
BLAST of Csa1G633400 vs. TrEMBL
Match: D7T1Q0_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_06s0009g00340 PE=4 SV=1)

HSP 1 Score: 292.4 bits (747), Expect = 5.4e-76
Identity = 147/231 (63.64%), Postives = 179/231 (77.49%), Query Frame = 1 

Query: 16  DWEAIADRPPNELLSLESEPDKPEQSVKEMKAQTPRRRGRGTFSYNKHELYSDKLSDSST 75
           DWE IADR PNELLS  S PD    S+++ KAQ  +RRGRGTFSY K ELYSD+ S+ ST
Sbjct: 90  DWETIADRAPNELLSPPSLPDVSTLSMEDNKAQITKRRGRGTFSYQKEELYSDRQSEGST 149

Query: 76  TDDTNEEESSHMIEGRRELKSAQYGTQHVLVLADFPPSTKTIDLERLLGNFMNSGVVIRW 135
            DDT +E   H  E + E++ ++YGTQHVLVLADFPPS +T DLE+L  NF +  VVIRW
Sbjct: 150 LDDTRDEAVCHDSEEKTEIRHSRYGTQHVLVLADFPPSMRTTDLEKLFENFRDREVVIRW 209

Query: 136 VNDTVALAVFQTPSTALEVLNHVRCPFTLRQLDENDTLLSSIPPRDLVPPKQRPKTSART 195
           VNDT+ALAVF+T + A+E  N VRCPFT+R LDE D LL+SI  RDL PP+QRP+TSART
Sbjct: 210 VNDTMALAVFRTATIAIEACNFVRCPFTVRVLDETDILLNSIQTRDLEPPRQRPETSART 269

Query: 196 AQRLIAQGMGLKLPNSTTSFGSKELRKQEEDRRNRIVSRQKLRDEAWGDDD 247
           A RLIAQ MG+KLP  +TSFGS+EL+KQEE R+ RIV+R+ L+D+AWG DD
Sbjct: 270 AGRLIAQAMGMKLP--STSFGSRELKKQEEARKQRIVARKNLKDDAWGSDD 318

[Close]
BLAST of Csa1G633400 vs. TrEMBL
Match: M1A5L1_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400005929 PE=4 SV=1)

HSP 1 Score: 289.7 bits (740), Expect = 3.5e-75
Identity = 148/242 (61.16%), Postives = 181/242 (74.79%), Query Frame = 1 

Query: 5   ECYFNTSDYFSDWEAIADRPPNELLSLESEPDKPEQSVKEMKAQTPRRRGRGTFSYNKHE 64
           + Y + +D   DWEAIADR P+ELLS +  P+  + S+++ K Q P+RRGRGTFSY K  
Sbjct: 115 QIYTSQNDEDDDWEAIADRAPDELLSPQHLPEVSKISLQDSKVQAPKRRGRGTFSYQKQS 174

Query: 65  LYSDKLSDSSTTDDTNEEESSHMIEGRRELKSAQYGTQHVLVLADFPPSTKTIDLERLLG 124
           LYSD+ SD    DD  +E  S   EG  + K+  YGT+HVLVLADFPPSTKT DLE+LL 
Sbjct: 175 LYSDQQSDEPAVDDIEDETVSGTPEGSSDTKNLNYGTRHVLVLADFPPSTKTNDLEKLLE 234

Query: 125 NFMNSGVVIRWVNDTVALAVFQTPSTALEVLNHVRCPFTLRQLDENDTLLSSIPPRDLVP 184
            F +  V IRWVNDTVALAVF+TP+ ALE  N + CPFT+R L E + LLSSIPPRDL P
Sbjct: 235 KFKDD-VAIRWVNDTVALAVFRTPALALEASNSIHCPFTVRVLCEENELLSSIPPRDLEP 294

Query: 185 PKQRPKTSARTAQRLIAQGMGLKLPNSTTSFGSKELRKQEEDRRNRIVSRQKLRDEAWGD 244
           P++RP+TSARTAQRLIAQ MG+KLP   T FGS+E R+QEE R+NRIVSRQ L+++AWGD
Sbjct: 295 PRRRPQTSARTAQRLIAQSMGIKLP--CTDFGSREYRRQEEARKNRIVSRQNLKNDAWGD 353

Query: 245 DD 247
           DD
Sbjct: 355 DD 353

[Close]
BLAST of Csa1G633400 vs. TAIR10
Match: AT5G22120.1 (AT5G22120.1 unknown protein)

HSP 1 Score: 256.1 bits (653), Expect = 2.2e-68
Identity = 134/231 (58.01%), Postives = 166/231 (71.86%), Query Frame = 1 

Query: 16  DWEAIADRPPNELLSLESEPDKPEQSVKEMKAQTPRRRGRGTFSYNKHELYSDK-LSDSS 75
           DWEA+AD  P++LL +E  P+  + SV+E K Q P+RRGRGTF+Y    +YSD+  S+S 
Sbjct: 156 DWEALADVEPSKLLPVEELPEISKLSVEEPKVQGPKRRGRGTFTYKSDAMYSDRDFSESR 215

Query: 76  TTDDTNEEESSHMIEGRRELKSAQYGTQHVLVLADFPPSTKTIDLERLLGNFMNSGVVIR 135
             DD+ + + S   E   E   ++YGT+HVLVLA F PS +T +LE+L  +F +SG +IR
Sbjct: 216 FDDDSEDNDLSRESEKTDESLKSKYGTRHVLVLAGFSPSLRTTELEKLFKDFKDSGFIIR 275

Query: 136 WVNDTVALAVFQTPSTALEVLNHVRCPFTLRQLDENDTLLSSIPPRDLVPPKQRPKTSAR 195
           WVNDT ALAVF+TPS ALE   HV+C FT+R LD+ND+LL SI  +DL PP QRPKTSA+
Sbjct: 276 WVNDTTALAVFKTPSAALEACKHVQCSFTIRVLDDNDSLLGSISGKDLEPPSQRPKTSAK 335

Query: 196 TAQRLIAQGMGLKLPNSTTSFGSKELRKQEEDRRNRIVSRQKLRDEAWGDD 246
           TAQRLIA  MGLKLP S   FGSKE R QE  R+NRIVSRQK R++AWGDD
Sbjct: 336 TAQRLIAHSMGLKLPAS--GFGSKE-RDQEAARKNRIVSRQKQREDAWGDD 383

[Close]
BLAST of Csa1G633400 vs. NCBI nr
Match: gi|700211493|gb|KGN66589.1| (hypothetical protein Csa_1G633400 [Cucumis sativus])

HSP 1 Score: 501.1 bits (1289), Expect = 1.1e-138
Identity = 248/248 (100.00%), Postives = 248/248 (100.00%), Query Frame = 1 

Query: 1   MRAGECYFNTSDYFSDWEAIADRPPNELLSLESEPDKPEQSVKEMKAQTPRRRGRGTFSY 60
           MRAGECYFNTSDYFSDWEAIADRPPNELLSLESEPDKPEQSVKEMKAQTPRRRGRGTFSY
Sbjct: 1   MRAGECYFNTSDYFSDWEAIADRPPNELLSLESEPDKPEQSVKEMKAQTPRRRGRGTFSY 60

Query: 61  NKHELYSDKLSDSSTTDDTNEEESSHMIEGRRELKSAQYGTQHVLVLADFPPSTKTIDLE 120
           NKHELYSDKLSDSSTTDDTNEEESSHMIEGRRELKSAQYGTQHVLVLADFPPSTKTIDLE
Sbjct: 61  NKHELYSDKLSDSSTTDDTNEEESSHMIEGRRELKSAQYGTQHVLVLADFPPSTKTIDLE 120

Query: 121 RLLGNFMNSGVVIRWVNDTVALAVFQTPSTALEVLNHVRCPFTLRQLDENDTLLSSIPPR 180
           RLLGNFMNSGVVIRWVNDTVALAVFQTPSTALEVLNHVRCPFTLRQLDENDTLLSSIPPR
Sbjct: 121 RLLGNFMNSGVVIRWVNDTVALAVFQTPSTALEVLNHVRCPFTLRQLDENDTLLSSIPPR 180

Query: 181 DLVPPKQRPKTSARTAQRLIAQGMGLKLPNSTTSFGSKELRKQEEDRRNRIVSRQKLRDE 240
           DLVPPKQRPKTSARTAQRLIAQGMGLKLPNSTTSFGSKELRKQEEDRRNRIVSRQKLRDE
Sbjct: 181 DLVPPKQRPKTSARTAQRLIAQGMGLKLPNSTTSFGSKELRKQEEDRRNRIVSRQKLRDE 240

Query: 241 AWGDDDPS 249
           AWGDDDPS
Sbjct: 241 AWGDDDPS 248

[Close]
BLAST of Csa1G633400 vs. NCBI nr
Match: gi|449442615|ref|XP_004139076.1| (PREDICTED: coiled-coil domain-containing protein R3HCC1L [Cucumis sativus])

HSP 1 Score: 468.4 bits (1204), Expect = 7.9e-129
Identity = 233/233 (100.00%), Postives = 233/233 (100.00%), Query Frame = 1 

Query: 16  DWEAIADRPPNELLSLESEPDKPEQSVKEMKAQTPRRRGRGTFSYNKHELYSDKLSDSST 75
           DWEAIADRPPNELLSLESEPDKPEQSVKEMKAQTPRRRGRGTFSYNKHELYSDKLSDSST
Sbjct: 145 DWEAIADRPPNELLSLESEPDKPEQSVKEMKAQTPRRRGRGTFSYNKHELYSDKLSDSST 204

Query: 76  TDDTNEEESSHMIEGRRELKSAQYGTQHVLVLADFPPSTKTIDLERLLGNFMNSGVVIRW 135
           TDDTNEEESSHMIEGRRELKSAQYGTQHVLVLADFPPSTKTIDLERLLGNFMNSGVVIRW
Sbjct: 205 TDDTNEEESSHMIEGRRELKSAQYGTQHVLVLADFPPSTKTIDLERLLGNFMNSGVVIRW 264

Query: 136 VNDTVALAVFQTPSTALEVLNHVRCPFTLRQLDENDTLLSSIPPRDLVPPKQRPKTSART 195
           VNDTVALAVFQTPSTALEVLNHVRCPFTLRQLDENDTLLSSIPPRDLVPPKQRPKTSART
Sbjct: 265 VNDTVALAVFQTPSTALEVLNHVRCPFTLRQLDENDTLLSSIPPRDLVPPKQRPKTSART 324

Query: 196 AQRLIAQGMGLKLPNSTTSFGSKELRKQEEDRRNRIVSRQKLRDEAWGDDDPS 249
           AQRLIAQGMGLKLPNSTTSFGSKELRKQEEDRRNRIVSRQKLRDEAWGDDDPS
Sbjct: 325 AQRLIAQGMGLKLPNSTTSFGSKELRKQEEDRRNRIVSRQKLRDEAWGDDDPS 377

[Close]
BLAST of Csa1G633400 vs. NCBI nr
Match: gi|659098774|ref|XP_008450290.1| (PREDICTED: uncharacterized protein LOC103491941 isoform X1 [Cucumis melo])

HSP 1 Score: 449.5 bits (1155), Expect = 3.8e-123
Identity = 224/233 (96.14%), Postives = 229/233 (98.28%), Query Frame = 1 

Query: 16  DWEAIADRPPNELLSLESEPDKPEQSVKEMKAQTPRRRGRGTFSYNKHELYSDKLSDSST 75
           DWEAIADRPPNELLSLESEPDK E SVKEMKAQTPRRRGRGTFSYNKHELYSDKLSDSST
Sbjct: 145 DWEAIADRPPNELLSLESEPDKREPSVKEMKAQTPRRRGRGTFSYNKHELYSDKLSDSST 204

Query: 76  TDDTNEEESSHMIEGRRELKSAQYGTQHVLVLADFPPSTKTIDLERLLGNFMNSGVVIRW 135
           T+DTNEE++S M+EGRRELKSAQYGTQHVLVLADFPPSTKTIDLERLLGNFMNSGVVIRW
Sbjct: 205 TNDTNEEDASRMLEGRRELKSAQYGTQHVLVLADFPPSTKTIDLERLLGNFMNSGVVIRW 264

Query: 136 VNDTVALAVFQTPSTALEVLNHVRCPFTLRQLDENDTLLSSIPPRDLVPPKQRPKTSART 195
           VNDTVALAVFQTPSTALEVLNHVRCPFTLRQLDENDTLLSSIP RDLVPPKQRPKTSART
Sbjct: 265 VNDTVALAVFQTPSTALEVLNHVRCPFTLRQLDENDTLLSSIPQRDLVPPKQRPKTSART 324

Query: 196 AQRLIAQGMGLKLPNSTTSFGSKELRKQEEDRRNRIVSRQKLRDEAWGDDDPS 249
           AQRLIAQGMGLKLP+STTSFGSKELRKQEEDRRNRIVSRQKLRDEAWGDDDPS
Sbjct: 325 AQRLIAQGMGLKLPHSTTSFGSKELRKQEEDRRNRIVSRQKLRDEAWGDDDPS 377

[Close]
BLAST of Csa1G633400 vs. NCBI nr
Match: gi|470110844|ref|XP_004291672.1| (PREDICTED: coiled-coil domain-containing protein R3HCC1L isoform X2 [Fragaria vesca subsp. vesca])

HSP 1 Score: 300.1 bits (767), Expect = 3.7e-78
Identity = 147/233 (63.09%), Postives = 189/233 (81.12%), Query Frame = 1 

Query: 16  DWEAIADRPPNELLSLESEPDKPEQSVKEMKAQTPRRRGRGTFSYNKHELYSDKLSDSST 75
           DWEAIADR P+ELLS +S P   + S+++ K Q P+RRGRGTF+Y KHELYSD+LS    
Sbjct: 128 DWEAIADRTPDELLSSQSLPGVSKLSLEDTKVQAPKRRGRGTFAYKKHELYSDQLSSKIV 187

Query: 76  TDDTNEEESS--HMIEGRRELKSAQYGTQHVLVLADFPPSTKTIDLERLLGNFMNSGVVI 135
            D+ + EE S  H +EG  E ++++YGT+H+LVLA FPPST+T++LE L  +F + GVVI
Sbjct: 188 VDNDSLEEESECHNLEGGEETRNSKYGTRHILVLAGFPPSTRTMELENLFKDFRDHGVVI 247

Query: 136 RWVNDTVALAVFQTPSTALEVLNHVRCPFTLRQLDENDTLLSSIPPRDLVPPKQRPKTSA 195
           RWVNDTVALAVFQTP+ ALE  NH++C  T+R L+E+DTLLSSI P+DL PP+QRPKTSA
Sbjct: 248 RWVNDTVALAVFQTPAIALEARNHIQCSMTVRVLNEDDTLLSSISPKDLEPPRQRPKTSA 307

Query: 196 RTAQRLIAQGMGLKLPNSTTSFGSKELRKQEEDRRNRIVSRQKLRDEAWGDDD 247
           RTAQRLIA GMGLKLP  +T+FGS++L++QE DRR+RIV+RQKL+D+AWG D+
Sbjct: 308 RTAQRLIAHGMGLKLP--STAFGSRDLKEQENDRRSRIVTRQKLKDDAWGGDE 358

[Close]
BLAST of Csa1G633400 vs. NCBI nr
Match: gi|645276087|ref|XP_008243122.1| (PREDICTED: uncharacterized protein LOC103341388 [Prunus mume])

HSP 1 Score: 298.1 bits (762), Expect = 1.4e-77
Identity = 146/231 (63.20%), Postives = 186/231 (80.52%), Query Frame = 1 

Query: 16  DWEAIADRPPNELLSLESEPDKPEQSVKEMKAQTPRRRGRGTFSYNKHELYSDKLSDSST 75
           DWEAIADR P+ELLS +  P+  + S+++ K QTP+RRGRGTFSY K ELYSD++ D   
Sbjct: 30  DWEAIADRKPDELLSSQVLPEVSKLSLEDTKGQTPKRRGRGTFSYKKDELYSDQIPDKLI 89

Query: 76  TDDTNEEESSHMIEGRRELKSAQYGTQHVLVLADFPPSTKTIDLERLLGNFMNSGVVIRW 135
            D   +E+  H +EG  +++++++GTQHVLVLADFPPST TI+LE+L  +F + GVVIRW
Sbjct: 90  IDTQEDEDVCHNLEGDPKIRNSKFGTQHVLVLADFPPSTTTIELEKLFQDFGDRGVVIRW 149

Query: 136 VNDTVALAVFQTPSTALEVLNHVRCPFTLRQLDENDTLLSSIPPRDLVPPKQRPKTSART 195
           VNDTVALAVFQTPS ALE  N +RC   +R LDENDTLLSSI P+DL PP+QRP+TS RT
Sbjct: 150 VNDTVALAVFQTPSIALEARNCIRCAMKVRVLDENDTLLSSISPKDLEPPRQRPQTSVRT 209

Query: 196 AQRLIAQGMGLKLPNSTTSFGSKELRKQEEDRRNRIVSRQKLRDEAWGDDD 247
           AQRLIA GMGLKLP  +T+FGS++L+KQE+DR++RIV RQKL+D+AWG D+
Sbjct: 210 AQRLIAHGMGLKLP--STAFGSEDLKKQEDDRKSRIVMRQKLKDDAWGTDE 258

The following BLAST results are available for this feature:
BLAST of Csa1G633400 vs. Swiss-Prot
Match NameE-valueIdentityDescription
R3HCL_HUMAN4.9e-1428.92Coiled-coil domain-containing protein R3HCC1L OS=Homo sapiens GN=R3HCC1L PE=1 SV... [more]
R3HCL_MOUSE1.4e-1335.76Coiled-coil domain-containing protein R3HCC1L OS=Mus musculus GN=R3hcc1l PE=1 SV... [more]
R3HC1_MOUSE1.6e-0934.26R3H and coiled-coil domain-containing protein 1 OS=Mus musculus GN=R3hcc1 PE=1 S... [more]
R3HC1_HUMAN2.8e-0927.22R3H and coiled-coil domain-containing protein 1 OS=Homo sapiens GN=R3HCC1 PE=1 S... [more]
BLAST of Csa1G633400 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LZY5_CUCSA7.6e-139100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G633400 PE=4 SV=1[more]
W9QVW8_9ROSA2.2e-7763.20Uncharacterized protein OS=Morus notabilis GN=L484_017132 PE=4 SV=1[more]
M5W335_PRUPE3.7e-7763.20Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010210mg PE=4 SV=1[more]
D7T1Q0_VITVI5.4e-7663.64Putative uncharacterized protein OS=Vitis vinifera GN=VIT_06s0009g00340 PE=4 SV=... [more]
M1A5L1_SOLTU3.5e-7561.16Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400005929 PE=4 SV=1[more]
BLAST of Csa1G633400 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G22120.12.2e-6858.01 unknown protein[more]
BLAST of Csa1G633400 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700211493|gb|KGN66589.1|1.1e-138100.00hypothetical protein Csa_1G633400 [Cucumis sativus][more]
gi|449442615|ref|XP_004139076.1|7.9e-129100.00PREDICTED: coiled-coil domain-containing protein R3HCC1L [Cucumis sativus][more]
gi|659098774|ref|XP_008450290.1|3.8e-12396.14PREDICTED: uncharacterized protein LOC103491941 isoform X1 [Cucumis melo][more]
gi|470110844|ref|XP_004291672.1|3.7e-7863.09PREDICTED: coiled-coil domain-containing protein R3HCC1L isoform X2 [Fragaria ve... [more]
gi|645276087|ref|XP_008243122.1|1.4e-7763.20PREDICTED: uncharacterized protein LOC103341388 [Prunus mume][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR012677Nucleotide-bd_a/b_plait_sf
Vocabulary: Molecular Function
TermDefinition
GO:0000166nucleotide binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0000166 nucleotide binding
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU094375cucumber EST collection version 3.0transcribed_cluster
CU120340cucumber EST collection version 3.0transcribed_cluster
CU123387cucumber EST collection version 3.0transcribed_cluster
CU130234cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa1G633400.1Csa1G633400.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU094375CU094375transcribed_cluster
CU120340CU120340transcribed_cluster
CU123387CU123387transcribed_cluster
CU130234CU130234transcribed_cluster


InterPro
Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR012677Nucleotide-binding alpha-beta plait domainGENE3DG3DSA:3.30.70.330coord: 96..175
score: 3.2
NoneNo IPR availablePANTHERPTHR21678GROWTH INHIBITION AND DIFFERENTIATION RELATED PROTEIN 88coord: 16..246
score: 2.4